Wall clock time and date at job start Tue Mar 31 2020 07:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99905 * 2 1 4 4 H 1.08995 * 109.48238 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47654 * 239.99809 * 3 2 1 6 6 C 1.42903 * 114.09430 * 178.84817 * 5 3 2 7 7 C 1.53093 * 109.41570 * 61.15783 * 6 5 3 8 8 C 1.53179 * 109.16232 * 302.39025 * 7 6 5 9 9 C 1.53103 * 109.49235 * 119.95775 * 3 2 1 10 10 H 1.09003 * 109.45213 * 57.65022 * 9 3 2 11 11 C 1.50693 * 109.60120 * 297.45470 * 9 3 2 12 12 O 1.21284 * 119.99777 * 0.27540 * 11 9 3 13 13 N 1.34774 * 120.00397 * 180.27583 * 11 9 3 14 14 C 1.46502 * 120.00531 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47100 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.96283 * 304.66464 * 15 14 13 17 17 C 1.53952 * 113.76505 * 172.99033 * 15 14 13 18 18 C 1.53944 * 86.28625 * 222.08841 * 17 15 14 19 19 N 1.47571 * 113.77031 * 76.34705 * 15 14 13 20 20 C 1.36939 * 134.49382 * 318.93122 * 19 15 14 21 21 H 1.08003 * 119.99878 * 7.02443 * 20 19 15 22 22 C 1.38809 * 120.00118 * 187.02499 * 20 19 15 23 23 N 1.31621 * 119.99926 * 7.60192 * 22 20 19 24 24 Si 1.86799 * 119.99986 * 187.59563 * 22 20 19 25 25 H 1.48502 * 109.46996 * 94.80982 * 24 22 20 26 26 H 1.48498 * 109.47240 * 214.80587 * 24 22 20 27 27 H 1.48495 * 109.47521 * 334.80816 * 24 22 20 28 28 H 1.08003 * 119.99868 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99770 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00188 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47949 * 301.17411 * 6 5 3 32 32 H 1.09001 * 109.49037 * 181.14563 * 6 5 3 33 33 H 1.09008 * 109.51946 * 182.48632 * 7 6 5 34 34 H 1.08996 * 109.57758 * 62.32863 * 7 6 5 35 35 H 1.08996 * 109.54225 * 176.85223 * 8 7 6 36 36 H 1.09007 * 109.54216 * 297.02296 * 8 7 6 37 37 H 0.97003 * 119.99730 * 359.97438 * 13 11 9 38 38 H 1.09003 * 109.46582 * 300.00329 * 14 13 11 39 39 H 1.09000 * 109.46897 * 59.99958 * 14 13 11 40 40 H 1.08997 * 113.74163 * 336.43754 * 17 15 14 41 41 H 1.08994 * 113.73998 * 107.63759 * 17 15 14 42 42 H 1.09004 * 113.76772 * 137.90690 * 18 17 15 43 43 H 1.08993 * 113.77193 * 269.19660 * 18 17 15 44 44 H 0.97001 * 119.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3554 2.1337 0.0005 5 8 2.8852 1.3810 -1.1668 6 6 3.6274 2.5969 -1.2796 7 6 4.5715 2.7298 -0.0818 8 6 3.7519 2.6875 1.2116 9 6 2.9431 1.3872 1.2504 10 1 3.6233 0.5358 1.2723 11 6 2.0743 1.3712 2.4816 12 8 0.8688 1.2959 2.3721 13 7 2.6368 1.4405 3.7044 14 6 1.7923 1.4243 4.9013 15 6 2.6737 1.5141 6.1487 16 1 3.4339 0.7340 6.1893 17 6 1.8808 1.6767 7.4583 18 6 2.9490 2.7100 7.8595 19 7 3.1969 2.8688 6.4110 20 6 3.7060 3.8694 5.6270 21 1 3.6794 3.7789 4.5510 22 6 4.2564 5.0000 6.2150 23 7 4.4259 5.0470 7.5194 24 14 4.7565 6.4546 5.1550 25 1 3.6487 7.4427 5.1161 26 1 5.9684 7.0921 5.7294 27 1 5.0499 5.9853 3.7770 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 2.9397 3.4424 -1.2960 32 1 4.2092 2.5836 -2.2012 33 1 5.1066 3.6776 -0.1431 34 1 5.2864 1.9070 -0.0871 35 1 4.4228 2.7254 2.0698 36 1 3.0733 3.5400 1.2413 37 1 3.6011 1.5003 3.7920 38 1 1.1106 2.2745 4.8764 39 1 1.2176 0.4985 4.9280 40 1 0.8874 2.1034 7.3197 41 1 1.8761 0.7830 8.0822 42 1 2.5409 3.6010 8.3368 43 1 3.7904 2.2830 8.4050 44 1 4.8102 5.8372 7.9303 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038259749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:28 Heat of formation + Delta-G solvation = -15.039474 kcal Electronic energy + Delta-G solvation = -24699.624490 eV Core-core repulsion = 21233.078980 eV Total energy + Delta-G solvation = -3466.545511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35296 -38.64086 -37.76867 -34.46453 -33.79444 -33.57368 -32.21570 -30.38160 -28.04723 -27.59351 -25.05667 -24.28581 -23.40483 -22.11212 -20.90810 -19.93451 -19.87366 -19.09589 -17.44546 -16.59333 -16.38360 -15.92024 -15.45049 -15.28842 -14.82690 -14.54211 -14.30337 -13.99811 -13.92770 -13.57803 -13.40148 -12.97729 -12.70745 -12.51205 -11.93261 -11.75261 -11.61505 -11.42900 -11.18576 -11.11857 -11.05867 -10.97871 -10.80181 -10.56195 -10.45557 -10.08418 -9.79207 -9.71998 -9.64265 -9.43209 -8.99514 -8.80494 -8.54795 -6.93479 -5.82565 -3.13206 2.31921 2.94891 3.33275 3.37718 3.41147 3.47108 3.92778 4.39047 4.61398 4.68988 4.75418 4.86350 5.03615 5.08179 5.16228 5.22266 5.34521 5.38140 5.39608 5.57915 5.62381 5.70297 5.71224 5.77105 5.83709 5.88911 5.93338 6.02051 6.08348 6.18683 6.28549 6.37425 6.58431 6.67328 6.71226 6.84875 6.90221 7.15214 7.18223 7.37297 7.50731 7.90218 7.92785 8.57072 8.99185 9.66592 10.56627 11.35562 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.005160 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.087782 B = 5425.399251 C = 6945.360174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.143 3.857 4 H 0.068 0.932 5 O -0.376 6.376 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.117 4.117 9 C -0.134 4.134 10 H 0.102 0.898 11 C 0.518 3.482 12 O -0.543 6.543 13 N -0.712 5.712 14 C 0.125 3.875 15 C 0.124 3.876 16 H 0.048 0.952 17 C -0.156 4.156 18 C 0.165 3.835 19 N -0.601 5.601 20 C -0.220 4.220 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -8.534 -12.406 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.168 4.168 3 C 0.086 3.914 4 H 0.086 0.914 5 O -0.295 6.295 6 C -0.018 4.018 7 C -0.192 4.192 8 C -0.155 4.155 9 C -0.156 4.156 10 H 0.120 0.880 11 C 0.303 3.697 12 O -0.421 6.421 13 N -0.362 5.362 14 C 0.000 4.000 15 C 0.017 3.983 16 H 0.066 0.934 17 C -0.195 4.195 18 C 0.040 3.960 19 N -0.328 5.328 20 C -0.348 4.348 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.918 -8.412 -12.650 15.470 hybrid contribution 1.086 1.137 -0.082 1.574 sum -1.832 -7.275 -12.732 14.778 Atomic orbital electron populations 1.23715 0.95585 1.01690 0.97047 1.22350 0.95593 0.96417 1.02483 1.20834 0.90298 0.96979 0.83332 0.91390 1.87958 1.60285 1.38877 1.42395 1.22606 0.93719 0.87170 0.98343 1.22195 0.98793 1.03251 0.94921 1.21623 0.98947 0.96083 0.98862 1.21920 0.98488 1.00880 0.94269 0.88031 1.20212 0.88653 0.76370 0.84464 1.90673 1.14624 1.49992 1.86829 1.45973 1.11126 1.73585 1.05556 1.21718 0.93686 1.01010 0.83539 1.22492 0.93687 0.89908 0.92214 0.93449 1.23754 0.99610 0.99645 0.96534 1.22096 0.92206 0.94797 0.86871 1.46190 1.73814 1.09460 1.03296 1.18948 1.31967 0.94682 0.89181 0.90338 1.24783 1.00741 0.98839 0.95916 1.69842 1.49338 1.28774 1.08478 0.86217 0.77810 0.83150 0.79262 1.21644 1.21765 1.20621 0.88468 0.88424 0.87425 0.93116 0.88767 0.90337 0.90767 0.90072 0.91020 0.76329 0.91193 0.92297 0.90566 0.92693 0.92188 0.94999 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 13.12 29.01 0.38 -1.44 16 2 C -0.15 -1.98 8.05 -36.02 -0.29 -2.27 16 3 C 0.14 1.95 2.17 -27.83 -0.06 1.89 16 4 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 5 O -0.38 -4.90 10.39 -35.23 -0.37 -5.27 16 6 C 0.06 0.62 6.84 37.21 0.25 0.87 16 7 C -0.15 -1.63 6.14 -26.59 -0.16 -1.79 16 8 C -0.12 -1.51 5.18 -26.55 -0.14 -1.65 16 9 C -0.13 -1.80 2.22 -91.63 -0.20 -2.00 16 10 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 11 C 0.52 8.42 6.90 -10.99 -0.08 8.34 16 12 O -0.54 -10.15 14.03 5.55 0.08 -10.07 16 13 N -0.71 -11.75 5.23 -60.29 -0.32 -12.06 16 14 C 0.13 2.21 5.54 -4.04 -0.02 2.19 16 15 C 0.12 2.35 4.33 -66.87 -0.29 2.06 16 16 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.16 -2.79 7.86 -25.79 -0.20 -3.00 16 18 C 0.17 3.73 7.32 -2.85 -0.02 3.71 16 19 N -0.60 -14.33 3.57 -169.72 -0.61 -14.93 16 20 C -0.22 -5.76 10.49 -15.06 -0.16 -5.91 16 21 H 0.08 1.96 7.61 -52.48 -0.40 1.56 16 22 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 23 N -0.92 -26.60 11.78 55.49 0.65 -25.94 16 24 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.10 1.28 7.83 -52.48 -0.41 0.87 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.40 6.41 7.96 -40.82 -0.32 6.09 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.49 7.71 -51.93 -0.40 1.09 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -30.78 356.09 -8.68 -39.46 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.38 Total: 6.17 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.08 Total: 0.73 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.27 Total: -52.94 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.29 Total: -15.34 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.78 -8.68 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038259749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.421 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds