Wall clock time and date at job start Tue Mar 31 2020 07:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99905 * 2 1 4 4 H 1.08995 * 109.48238 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47654 * 239.99809 * 3 2 1 6 6 C 1.42903 * 114.09430 * 178.84817 * 5 3 2 7 7 C 1.53093 * 109.41570 * 61.15783 * 6 5 3 8 8 C 1.53179 * 109.16232 * 302.39025 * 7 6 5 9 9 C 1.53103 * 109.49235 * 119.95775 * 3 2 1 10 10 H 1.09003 * 109.45213 * 57.65022 * 9 3 2 11 11 C 1.50693 * 109.60120 * 297.45470 * 9 3 2 12 12 O 1.21284 * 119.99777 * 0.27540 * 11 9 3 13 13 N 1.34774 * 120.00397 * 180.27583 * 11 9 3 14 14 C 1.46502 * 120.00531 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47100 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.96283 * 304.66464 * 15 14 13 17 17 C 1.53952 * 113.76505 * 172.99033 * 15 14 13 18 18 C 1.53944 * 86.28625 * 222.08841 * 17 15 14 19 19 N 1.47571 * 113.77031 * 76.34705 * 15 14 13 20 20 C 1.36939 * 134.49382 * 318.93122 * 19 15 14 21 21 H 1.08003 * 119.99878 * 7.02443 * 20 19 15 22 22 C 1.38809 * 120.00118 * 187.02499 * 20 19 15 23 23 N 1.31621 * 119.99926 * 7.60192 * 22 20 19 24 24 Si 1.86799 * 119.99986 * 187.59563 * 22 20 19 25 25 H 1.48502 * 109.46996 * 94.80982 * 24 22 20 26 26 H 1.48498 * 109.47240 * 214.80587 * 24 22 20 27 27 H 1.48495 * 109.47521 * 334.80816 * 24 22 20 28 28 H 1.08003 * 119.99868 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99770 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00188 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47949 * 301.17411 * 6 5 3 32 32 H 1.09001 * 109.49037 * 181.14563 * 6 5 3 33 33 H 1.09008 * 109.51946 * 182.48632 * 7 6 5 34 34 H 1.08996 * 109.57758 * 62.32863 * 7 6 5 35 35 H 1.08996 * 109.54225 * 176.85223 * 8 7 6 36 36 H 1.09007 * 109.54216 * 297.02296 * 8 7 6 37 37 H 0.97003 * 119.99730 * 359.97438 * 13 11 9 38 38 H 1.09003 * 109.46582 * 300.00329 * 14 13 11 39 39 H 1.09000 * 109.46897 * 59.99958 * 14 13 11 40 40 H 1.08997 * 113.74163 * 336.43754 * 17 15 14 41 41 H 1.08994 * 113.73998 * 107.63759 * 17 15 14 42 42 H 1.09004 * 113.76772 * 137.90690 * 18 17 15 43 43 H 1.08993 * 113.77193 * 269.19660 * 18 17 15 44 44 H 0.97001 * 119.99881 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3554 2.1337 0.0005 5 8 2.8852 1.3810 -1.1668 6 6 3.6274 2.5969 -1.2796 7 6 4.5715 2.7298 -0.0818 8 6 3.7519 2.6875 1.2116 9 6 2.9431 1.3872 1.2504 10 1 3.6233 0.5358 1.2723 11 6 2.0743 1.3712 2.4816 12 8 0.8688 1.2959 2.3721 13 7 2.6368 1.4405 3.7044 14 6 1.7923 1.4243 4.9013 15 6 2.6737 1.5141 6.1487 16 1 3.4339 0.7340 6.1893 17 6 1.8808 1.6767 7.4583 18 6 2.9490 2.7100 7.8595 19 7 3.1969 2.8688 6.4110 20 6 3.7060 3.8694 5.6270 21 1 3.6794 3.7789 4.5510 22 6 4.2564 5.0000 6.2150 23 7 4.4259 5.0470 7.5194 24 14 4.7565 6.4546 5.1550 25 1 3.6487 7.4427 5.1161 26 1 5.9684 7.0921 5.7294 27 1 5.0499 5.9853 3.7770 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 2.9397 3.4424 -1.2960 32 1 4.2092 2.5836 -2.2012 33 1 5.1066 3.6776 -0.1431 34 1 5.2864 1.9070 -0.0871 35 1 4.4228 2.7254 2.0698 36 1 3.0733 3.5400 1.2413 37 1 3.6011 1.5003 3.7920 38 1 1.1106 2.2745 4.8764 39 1 1.2176 0.4985 4.9280 40 1 0.8874 2.1034 7.3197 41 1 1.8761 0.7830 8.0822 42 1 2.5409 3.6010 8.3368 43 1 3.7904 2.2830 8.4050 44 1 4.8102 5.8372 7.9303 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038259749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:27 Heat of formation + Delta-G solvation = -34.775006 kcal Electronic energy + Delta-G solvation = -24700.480287 eV Core-core repulsion = 21233.078980 eV Total energy + Delta-G solvation = -3467.401308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51245 -39.99955 -39.21715 -35.70214 -34.87615 -34.71771 -34.15714 -31.39109 -29.89255 -29.09523 -26.02774 -25.42143 -25.28798 -23.58594 -22.01885 -21.18314 -20.91356 -20.69230 -18.88399 -18.13368 -17.50107 -17.11707 -17.00854 -16.62645 -16.14088 -15.79418 -15.65517 -15.52340 -14.99813 -14.89462 -14.80581 -14.39432 -13.90967 -13.60107 -13.43913 -13.24830 -12.99361 -12.80927 -12.68569 -12.62952 -12.56114 -12.25486 -12.10652 -11.90007 -11.87862 -11.51315 -11.41891 -11.30270 -10.81838 -10.76025 -10.67911 -10.10301 -9.93871 -8.88474 -7.88366 -5.18025 1.32985 1.42559 1.45187 1.52224 1.66822 2.20686 2.47793 2.94838 3.34116 3.38515 3.56979 3.66686 3.73614 3.94433 3.99544 4.06589 4.10008 4.20814 4.23861 4.35844 4.37887 4.51412 4.65006 4.66516 4.73096 4.77251 4.83337 4.88036 4.96660 4.98907 5.05346 5.07233 5.12464 5.24141 5.32209 5.50149 5.58787 5.68166 5.74318 5.88234 5.95860 6.20045 6.59058 6.95121 7.26961 7.65944 8.61851 9.30271 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.005160 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.087782 B = 5425.399251 C = 6945.360174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.163 4.163 3 C 0.146 3.854 4 H 0.049 0.951 5 O -0.384 6.384 6 C 0.052 3.948 7 C -0.148 4.148 8 C -0.118 4.118 9 C -0.125 4.125 10 H 0.119 0.881 11 C 0.516 3.484 12 O -0.569 6.569 13 N -0.712 5.712 14 C 0.135 3.865 15 C 0.131 3.869 16 H 0.066 0.934 17 C -0.130 4.130 18 C 0.157 3.843 19 N -0.627 5.627 20 C -0.210 4.210 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.955 5.955 24 Si 0.961 3.039 25 H -0.297 1.297 26 H -0.299 1.299 27 H -0.260 1.260 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.406 0.594 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.026 0.974 43 H 0.023 0.977 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -10.111 -14.058 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.181 4.181 3 C 0.088 3.912 4 H 0.067 0.933 5 O -0.303 6.303 6 C -0.024 4.024 7 C -0.185 4.185 8 C -0.156 4.156 9 C -0.146 4.146 10 H 0.137 0.863 11 C 0.303 3.697 12 O -0.448 6.448 13 N -0.362 5.362 14 C 0.010 3.990 15 C 0.025 3.975 16 H 0.084 0.916 17 C -0.169 4.169 18 C 0.031 3.969 19 N -0.354 5.354 20 C -0.339 4.339 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.605 5.605 24 Si 0.791 3.209 25 H -0.225 1.225 26 H -0.226 1.226 27 H -0.184 1.184 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.241 0.759 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.585 -10.023 -14.337 17.683 hybrid contribution 0.928 1.575 0.417 1.875 sum -1.658 -8.447 -13.920 16.367 Atomic orbital electron populations 1.23854 0.95682 1.02138 0.96595 1.22523 0.95901 0.96728 1.02925 1.20727 0.90139 0.96653 0.83659 0.93262 1.87954 1.60364 1.40029 1.41963 1.22829 0.93758 0.86327 0.99495 1.22179 0.98558 1.04419 0.93359 1.21629 0.98717 0.95073 1.00176 1.21879 0.98212 1.01835 0.92687 0.86298 1.20685 0.88621 0.75390 0.84999 1.90662 1.15901 1.51065 1.87187 1.45962 1.11186 1.73610 1.05453 1.21498 0.93153 1.00781 0.83541 1.22647 0.93848 0.87707 0.93299 0.91617 1.23552 0.98052 0.99388 0.95912 1.22068 0.93531 0.94986 0.86279 1.46544 1.73558 1.11358 1.03923 1.19325 1.29593 0.95072 0.89926 0.89506 1.25507 1.02293 1.01469 0.96925 1.70010 1.51434 1.28982 1.10026 0.85304 0.76655 0.80106 0.78874 1.22534 1.22559 1.18417 0.86547 0.89533 0.86153 0.93221 0.86268 0.89066 0.89704 0.90566 0.92696 0.75902 0.93946 0.90300 0.90169 0.88800 0.95538 0.95938 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 13.12 67.78 0.89 -2.64 16 2 C -0.16 -4.05 8.05 25.64 0.21 -3.85 16 3 C 0.15 3.79 2.17 29.88 0.06 3.86 16 4 H 0.05 1.44 7.68 -2.39 -0.02 1.43 16 5 O -0.38 -9.26 10.39 -148.98 -1.55 -10.81 16 6 C 0.05 0.98 6.84 72.01 0.49 1.47 16 7 C -0.15 -2.74 6.14 30.69 0.19 -2.55 16 8 C -0.12 -2.86 5.18 30.71 0.16 -2.70 16 9 C -0.12 -3.14 2.22 -11.45 -0.03 -3.17 16 10 H 0.12 2.60 8.14 -2.39 -0.02 2.59 16 11 C 0.52 16.12 6.90 87.66 0.60 16.72 16 12 O -0.57 -20.76 14.03 -3.04 -0.04 -20.81 16 13 N -0.71 -22.30 5.23 -463.06 -2.42 -24.73 16 14 C 0.14 4.53 5.54 86.38 0.48 5.01 16 15 C 0.13 4.67 4.33 45.10 0.20 4.86 16 16 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.13 -4.37 7.86 31.25 0.25 -4.13 16 18 C 0.16 7.09 7.32 86.44 0.63 7.72 16 19 N -0.63 -29.62 3.57 -690.88 -2.47 -32.09 16 20 C -0.21 -10.97 10.49 84.03 0.88 -10.09 16 21 H 0.09 4.26 7.61 -2.91 -0.02 4.24 16 22 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 23 N -0.95 -56.87 11.78 21.65 0.26 -56.61 16 24 Si 0.96 44.75 29.56 68.60 2.03 46.78 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 28 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.09 2.26 7.83 -2.91 -0.02 2.24 16 30 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 36 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.41 12.18 7.96 -92.71 -0.74 11.44 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 41 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.03 1.35 7.71 -2.38 -0.02 1.33 16 43 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -66.95 356.09 1.51 -65.44 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.23 Total: 25.66 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.48 Total: 7.16 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -4.64 Total: -113.43 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.59 Total: -31.61 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.95 1.51 -65.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038259749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.668 kcal (2) G-P(sol) polarization free energy of solvation -66.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds