Wall clock time and date at job start Tue Mar 31 2020 07:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99536 * 2 1 4 4 C 1.50698 * 120.00485 * 180.02562 * 2 1 3 5 5 H 1.08999 * 110.32970 * 129.67565 * 4 2 1 6 6 O 1.44429 * 110.46266 * 7.36925 * 4 2 1 7 7 C 1.44428 * 105.27036 * 200.61090 * 6 4 2 8 8 C 1.54477 * 104.80448 * 40.51142 * 7 6 4 9 9 C 1.54475 * 110.37414 * 251.93387 * 4 2 1 10 10 H 1.09005 * 110.51070 * 261.70237 * 9 4 2 11 11 C 1.50705 * 110.51192 * 24.27092 * 9 4 2 12 12 O 1.21279 * 119.99722 * 81.41304 * 11 9 4 13 13 N 1.34773 * 120.00194 * 261.41828 * 11 9 4 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.47302 * 179.97438 * 14 13 11 16 16 H 1.09005 * 112.77721 * 56.27407 * 15 14 13 17 17 C 1.53749 * 113.55494 * 187.13293 * 15 14 13 18 18 C 1.53497 * 83.25752 * 140.98975 * 17 15 14 19 19 N 1.47059 * 113.46894 * 285.49665 * 15 14 13 20 20 C 1.36938 * 136.05906 * 38.13135 * 19 15 14 21 21 H 1.08001 * 120.00091 * 4.44092 * 20 19 15 22 22 C 1.38815 * 120.00539 * 184.44146 * 20 19 15 23 23 N 1.31621 * 119.99263 * 5.37044 * 22 20 19 24 24 Si 1.86794 * 120.00479 * 185.37517 * 22 20 19 25 25 H 1.48501 * 109.46986 * 265.01023 * 24 22 20 26 26 H 1.48502 * 109.46895 * 25.00303 * 24 22 20 27 27 H 1.48493 * 109.47287 * 145.00572 * 24 22 20 28 28 H 1.08001 * 119.99317 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00220 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47094 * 275.44445 * 3 2 1 31 31 H 1.08998 * 109.47004 * 35.44675 * 3 2 1 32 32 H 1.08998 * 109.46689 * 155.44443 * 3 2 1 33 33 H 1.09000 * 110.37088 * 159.34553 * 7 6 4 34 34 H 1.08992 * 110.37204 * 281.56357 * 7 6 4 35 35 H 1.09003 * 110.50744 * 217.37674 * 8 7 6 36 36 H 1.08999 * 110.51334 * 94.66869 * 8 7 6 37 37 H 0.97008 * 119.99825 * 359.97438 * 13 11 9 38 38 H 1.08997 * 109.47314 * 59.99731 * 14 13 11 39 39 H 1.08995 * 109.47198 * 299.99408 * 14 13 11 40 40 H 1.09004 * 114.39410 * 27.42390 * 17 15 14 41 41 H 1.09005 * 114.26889 * 254.53993 * 17 15 14 42 42 H 1.09005 * 113.46364 * 218.98313 * 18 17 15 43 43 H 1.08992 * 113.46803 * 88.54713 * 18 17 15 44 44 H 0.97007 * 119.99748 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 2.8181 -1.3063 -0.7873 6 8 1.1540 -2.4133 -0.1746 7 6 1.8625 -3.5688 0.3240 8 6 2.5861 -3.0703 1.5945 9 6 2.7214 -1.5468 1.3760 10 1 3.7711 -1.2537 1.3545 11 6 1.9857 -0.7915 2.4528 12 8 0.9705 -1.2518 2.9307 13 7 2.4559 0.3955 2.8846 14 6 1.7404 1.1299 3.9309 15 6 2.4795 2.4348 4.2345 16 1 2.6159 3.0580 3.3507 17 6 1.9076 3.1987 5.4400 18 6 3.3876 3.4809 5.7335 19 7 3.7133 2.2420 5.0112 20 6 4.7240 1.3186 5.0434 21 1 4.7461 0.5167 4.3203 22 6 5.7202 1.4130 6.0055 23 7 5.6376 2.3252 6.9507 24 14 7.1777 0.2458 5.9586 25 1 6.9152 -0.9101 6.8532 26 1 7.3790 -0.2392 4.5695 27 1 8.3976 0.9585 6.4157 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 2.1606 1.6686 -1.0231 31 1 1.5200 2.0384 0.5960 32 1 3.0546 1.1525 0.4271 33 1 1.1613 -4.3649 0.5744 34 1 2.5847 -3.9185 -0.4136 35 1 3.5694 -3.5327 1.6802 36 1 1.9871 -3.2772 2.4813 37 1 3.2681 0.7635 2.5026 38 1 1.6924 0.5214 4.8340 39 1 0.7298 1.3552 3.5905 40 1 1.4172 2.5677 6.1814 41 1 1.3278 4.0832 5.1759 42 1 3.6346 3.4425 6.7945 43 1 3.7632 4.3798 5.2450 44 1 6.3339 2.3916 7.6229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038806614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:23 Heat of formation + Delta-G solvation = -4.260269 kcal Electronic energy + Delta-G solvation = -25050.408006 eV Core-core repulsion = 21584.329916 eV Total energy + Delta-G solvation = -3466.078089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57316 -38.63583 -37.73633 -35.12996 -33.89480 -32.34440 -32.16618 -29.04158 -28.05362 -27.50743 -27.06359 -23.89447 -23.49296 -22.46942 -21.40898 -20.08878 -19.27575 -18.54633 -17.25116 -16.64470 -16.41848 -15.85534 -15.52616 -15.17105 -15.09996 -14.48448 -14.16480 -13.84365 -13.65390 -13.36029 -13.12118 -13.07498 -12.86098 -12.26230 -12.00066 -11.84986 -11.66652 -11.57619 -11.31033 -11.17397 -11.10207 -10.96734 -10.86601 -10.81327 -10.59313 -10.01551 -9.95175 -9.85375 -9.52981 -9.17051 -8.96303 -8.86055 -8.48131 -6.91291 -5.79726 -3.13595 2.24208 2.96816 3.34152 3.37841 3.41326 3.55862 3.74720 4.37280 4.39400 4.72551 4.83253 4.94885 5.03028 5.12994 5.18908 5.21984 5.35649 5.37811 5.45452 5.51155 5.55986 5.62163 5.65928 5.73442 5.78460 5.90015 5.98098 6.02533 6.09218 6.13489 6.33034 6.39914 6.54285 6.59386 6.66870 6.71766 6.94538 6.99138 7.19909 7.37971 7.56374 7.95760 7.96797 8.65223 8.98518 9.66832 10.60164 11.36169 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.005126 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.494126 B = 5461.115479 C = 6492.733430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.148 4.148 3 C -0.111 4.111 4 C 0.131 3.869 5 H 0.083 0.917 6 O -0.362 6.362 7 C 0.050 3.950 8 C -0.142 4.142 9 C -0.140 4.140 10 H 0.102 0.898 11 C 0.527 3.473 12 O -0.543 6.543 13 N -0.710 5.710 14 C 0.124 3.876 15 C 0.128 3.872 16 H 0.048 0.952 17 C -0.160 4.160 18 C 0.143 3.857 19 N -0.600 5.600 20 C -0.213 4.213 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.915 5.915 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.282 1.282 27 H -0.290 1.290 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.022 0.978 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 -4.439 -13.915 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C -0.167 4.167 4 C 0.073 3.927 5 H 0.101 0.899 6 O -0.280 6.280 7 C -0.027 4.027 8 C -0.180 4.180 9 C -0.161 4.161 10 H 0.120 0.880 11 C 0.313 3.687 12 O -0.420 6.420 13 N -0.360 5.360 14 C 0.000 4.000 15 C 0.021 3.979 16 H 0.065 0.935 17 C -0.199 4.199 18 C 0.018 3.982 19 N -0.326 5.326 20 C -0.340 4.340 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.562 5.562 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.216 1.216 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.071 -4.903 -13.503 16.012 hybrid contribution 1.647 -0.379 -0.060 1.691 sum -5.424 -5.281 -13.563 15.532 Atomic orbital electron populations 1.23684 0.95366 1.02096 0.97829 1.21450 0.95851 0.93824 1.03667 1.20785 1.00097 0.93952 1.01910 1.21612 0.90751 0.86398 0.93943 0.89943 1.89124 1.38735 1.16453 1.83733 1.23370 0.95952 0.89496 0.93899 1.22935 1.02001 0.92461 1.00561 1.22729 1.01181 0.96997 0.95238 0.88015 1.19917 0.85069 0.81282 0.82460 1.90648 1.25059 1.68072 1.58251 1.45984 1.29042 1.20858 1.40072 1.21740 0.94517 0.93473 0.90313 1.22464 0.88083 0.92724 0.94663 0.93526 1.23686 0.98807 0.99129 0.98242 1.22127 0.88064 0.88378 0.99660 1.45604 1.22768 1.23810 1.40434 1.18809 0.99974 1.03555 1.11705 0.90374 1.24769 0.99254 0.99033 0.97340 1.69829 1.34452 1.35974 1.15957 0.86177 0.82457 0.80065 0.77494 1.21620 1.20723 1.21635 0.87434 0.88604 0.91572 0.91142 0.91988 0.88870 0.92250 0.89975 0.88892 0.76553 0.91290 0.92515 0.90218 0.92501 0.90314 0.96016 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 13.68 29.01 0.40 -1.63 16 2 C -0.15 -1.87 3.78 -101.06 -0.38 -2.25 16 3 C -0.11 -1.20 9.09 36.01 0.33 -0.88 16 4 C 0.13 1.63 3.51 -27.11 -0.10 1.53 16 5 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 6 O -0.36 -4.93 9.84 -35.23 -0.35 -5.27 16 7 C 0.05 0.54 7.63 37.93 0.29 0.83 16 8 C -0.14 -1.73 6.59 -25.17 -0.17 -1.89 16 9 C -0.14 -1.85 3.34 -90.21 -0.30 -2.16 16 10 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 11 C 0.53 8.86 5.16 -10.98 -0.06 8.80 16 12 O -0.54 -10.97 15.89 5.56 0.09 -10.88 16 13 N -0.71 -11.79 4.49 -60.30 -0.27 -12.06 16 14 C 0.12 2.24 5.53 -4.04 -0.02 2.22 16 15 C 0.13 2.42 4.11 -72.27 -0.30 2.12 16 16 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.16 -2.90 8.04 -26.09 -0.21 -3.11 16 18 C 0.14 3.24 7.58 -8.52 -0.06 3.17 16 19 N -0.60 -14.32 3.64 -176.88 -0.64 -14.97 16 20 C -0.21 -5.60 10.54 -15.06 -0.16 -5.75 16 21 H 0.08 1.96 7.48 -52.49 -0.39 1.56 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.55 11.42 55.49 0.63 -25.92 16 24 Si 0.91 21.59 29.56 -169.99 -5.02 16.57 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.11 1.56 6.92 -52.49 -0.36 1.20 16 29 H 0.10 1.13 8.05 -52.49 -0.42 0.71 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 32 H 0.06 0.66 6.99 -51.93 -0.36 0.29 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 37 H 0.40 6.32 7.32 -40.82 -0.30 6.02 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.47 8.13 -51.93 -0.42 1.05 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 2.01 6.85 -51.93 -0.36 1.65 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -31.87 354.96 -8.24 -40.11 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.19 Total: 6.36 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.83 Total: 0.71 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.28 Total: -52.94 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.26 Total: -16.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.87 -8.24 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038806614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.845 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds