Wall clock time and date at job start Tue Mar 31 2020 07:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99536 * 2 1 4 4 C 1.50698 * 120.00485 * 180.02562 * 2 1 3 5 5 H 1.08999 * 110.32970 * 129.67565 * 4 2 1 6 6 O 1.44429 * 110.46266 * 7.36925 * 4 2 1 7 7 C 1.44428 * 105.27036 * 200.61090 * 6 4 2 8 8 C 1.54477 * 104.80448 * 40.51142 * 7 6 4 9 9 C 1.54475 * 110.37414 * 251.93387 * 4 2 1 10 10 H 1.09005 * 110.51070 * 261.70237 * 9 4 2 11 11 C 1.50705 * 110.51192 * 24.27092 * 9 4 2 12 12 O 1.21279 * 119.99722 * 81.41304 * 11 9 4 13 13 N 1.34773 * 120.00194 * 261.41828 * 11 9 4 14 14 C 1.46494 * 120.00049 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.47302 * 179.97438 * 14 13 11 16 16 H 1.09005 * 112.77721 * 56.27407 * 15 14 13 17 17 C 1.53749 * 113.55494 * 187.13293 * 15 14 13 18 18 C 1.53497 * 83.25752 * 140.98975 * 17 15 14 19 19 N 1.47059 * 113.46894 * 285.49665 * 15 14 13 20 20 C 1.36938 * 136.05906 * 38.13135 * 19 15 14 21 21 H 1.08001 * 120.00091 * 4.44092 * 20 19 15 22 22 C 1.38815 * 120.00539 * 184.44146 * 20 19 15 23 23 N 1.31621 * 119.99263 * 5.37044 * 22 20 19 24 24 Si 1.86794 * 120.00479 * 185.37517 * 22 20 19 25 25 H 1.48501 * 109.46986 * 265.01023 * 24 22 20 26 26 H 1.48502 * 109.46895 * 25.00303 * 24 22 20 27 27 H 1.48493 * 109.47287 * 145.00572 * 24 22 20 28 28 H 1.08001 * 119.99317 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00220 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47094 * 275.44445 * 3 2 1 31 31 H 1.08998 * 109.47004 * 35.44675 * 3 2 1 32 32 H 1.08998 * 109.46689 * 155.44443 * 3 2 1 33 33 H 1.09000 * 110.37088 * 159.34553 * 7 6 4 34 34 H 1.08992 * 110.37204 * 281.56357 * 7 6 4 35 35 H 1.09003 * 110.50744 * 217.37674 * 8 7 6 36 36 H 1.08999 * 110.51334 * 94.66869 * 8 7 6 37 37 H 0.97008 * 119.99825 * 359.97438 * 13 11 9 38 38 H 1.08997 * 109.47314 * 59.99731 * 14 13 11 39 39 H 1.08995 * 109.47198 * 299.99408 * 14 13 11 40 40 H 1.09004 * 114.39410 * 27.42390 * 17 15 14 41 41 H 1.09005 * 114.26889 * 254.53993 * 17 15 14 42 42 H 1.09005 * 113.46364 * 218.98313 * 18 17 15 43 43 H 1.08992 * 113.46803 * 88.54713 * 18 17 15 44 44 H 0.97007 * 119.99748 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 2.8181 -1.3063 -0.7873 6 8 1.1540 -2.4133 -0.1746 7 6 1.8625 -3.5688 0.3240 8 6 2.5861 -3.0703 1.5945 9 6 2.7214 -1.5468 1.3760 10 1 3.7711 -1.2537 1.3545 11 6 1.9857 -0.7915 2.4528 12 8 0.9705 -1.2518 2.9307 13 7 2.4559 0.3955 2.8846 14 6 1.7404 1.1299 3.9309 15 6 2.4795 2.4348 4.2345 16 1 2.6159 3.0580 3.3507 17 6 1.9076 3.1987 5.4400 18 6 3.3876 3.4809 5.7335 19 7 3.7133 2.2420 5.0112 20 6 4.7240 1.3186 5.0434 21 1 4.7461 0.5167 4.3203 22 6 5.7202 1.4130 6.0055 23 7 5.6376 2.3252 6.9507 24 14 7.1777 0.2458 5.9586 25 1 6.9152 -0.9101 6.8532 26 1 7.3790 -0.2392 4.5695 27 1 8.3976 0.9585 6.4157 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 2.1606 1.6686 -1.0231 31 1 1.5200 2.0384 0.5960 32 1 3.0546 1.1525 0.4271 33 1 1.1613 -4.3649 0.5744 34 1 2.5847 -3.9185 -0.4136 35 1 3.5694 -3.5327 1.6802 36 1 1.9871 -3.2772 2.4813 37 1 3.2681 0.7635 2.5026 38 1 1.6924 0.5214 4.8340 39 1 0.7298 1.3552 3.5905 40 1 1.4172 2.5677 6.1814 41 1 1.3278 4.0832 5.1759 42 1 3.6346 3.4425 6.7945 43 1 3.7632 4.3798 5.2450 44 1 6.3339 2.3916 7.6229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038806614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:23 Heat of formation + Delta-G solvation = -25.256397 kcal Electronic energy + Delta-G solvation = -25051.318466 eV Core-core repulsion = 21584.329916 eV Total energy + Delta-G solvation = -3466.988550 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69454 -40.11553 -39.12321 -36.11723 -35.31009 -34.21370 -33.30072 -30.15182 -29.85771 -28.84676 -28.01985 -25.37403 -24.99776 -23.70322 -22.70158 -21.38927 -20.87845 -19.66501 -18.67969 -18.05559 -17.54484 -17.12099 -16.86085 -16.65728 -16.23370 -15.92567 -15.68910 -15.34638 -14.83347 -14.74525 -14.47667 -14.08021 -13.96155 -13.62140 -13.40618 -13.05497 -12.94464 -12.89565 -12.71282 -12.62728 -12.55786 -12.29383 -12.26274 -12.14446 -11.84753 -11.77393 -11.61754 -11.19097 -10.87551 -10.83778 -10.59249 -9.97417 -9.88205 -8.85252 -7.84096 -5.17294 1.26400 1.45377 1.46741 1.54661 1.68610 2.26280 2.49378 2.85060 3.35821 3.39378 3.46062 3.71592 3.81638 3.96658 4.02425 4.16491 4.18287 4.24146 4.29770 4.36085 4.38183 4.57576 4.65615 4.65831 4.72000 4.79976 4.84897 4.88303 4.91447 5.03398 5.06255 5.10857 5.11540 5.17039 5.35559 5.52249 5.60934 5.62585 5.71733 5.76814 6.01323 6.06369 6.64780 6.95069 7.33866 7.66892 8.66772 9.32192 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.005126 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.494126 B = 5461.115479 C = 6492.733430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.147 4.147 3 C -0.109 4.109 4 C 0.129 3.871 5 H 0.112 0.888 6 O -0.386 6.386 7 C 0.049 3.951 8 C -0.143 4.143 9 C -0.139 4.139 10 H 0.125 0.875 11 C 0.525 3.475 12 O -0.582 6.582 13 N -0.705 5.705 14 C 0.135 3.865 15 C 0.137 3.863 16 H 0.074 0.926 17 C -0.137 4.137 18 C 0.135 3.865 19 N -0.627 5.627 20 C -0.204 4.204 21 H 0.089 0.911 22 C -0.073 4.073 23 N -0.953 5.953 24 Si 0.966 3.034 25 H -0.296 1.296 26 H -0.260 1.260 27 H -0.299 1.299 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.406 0.594 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.026 0.974 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 -4.691 -16.402 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.166 4.166 4 C 0.071 3.929 5 H 0.130 0.870 6 O -0.305 6.305 7 C -0.028 4.028 8 C -0.181 4.181 9 C -0.161 4.161 10 H 0.143 0.857 11 C 0.312 3.688 12 O -0.463 6.463 13 N -0.355 5.355 14 C 0.010 3.990 15 C 0.031 3.969 16 H 0.091 0.909 17 C -0.176 4.176 18 C 0.009 3.991 19 N -0.353 5.353 20 C -0.333 4.333 21 H 0.107 0.893 22 C -0.265 4.265 23 N -0.603 5.603 24 Si 0.796 3.204 25 H -0.224 1.224 26 H -0.184 1.184 27 H -0.226 1.226 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.242 0.758 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.628 -5.157 -16.039 18.104 hybrid contribution 1.418 -0.295 0.699 1.608 sum -5.210 -5.452 -15.340 17.093 Atomic orbital electron populations 1.23675 0.95947 1.01736 0.99513 1.21751 0.95823 0.94924 1.02253 1.20812 0.99838 0.92785 1.03136 1.21813 0.91077 0.85985 0.94015 0.87035 1.89112 1.39988 1.17520 1.83925 1.23544 0.96476 0.88818 0.93920 1.22967 1.03029 0.92059 1.00008 1.22827 1.01889 0.97072 0.94300 0.85694 1.20564 0.84633 0.80985 0.82611 1.90634 1.26982 1.68907 1.59734 1.45943 1.29102 1.20942 1.39532 1.21474 0.95367 0.92613 0.89539 1.22591 0.85720 0.93276 0.95294 0.90872 1.23518 0.96348 1.00326 0.97412 1.22139 0.91243 0.88288 0.97432 1.45909 1.23668 1.23883 1.41837 1.19208 0.99727 1.03635 1.10698 0.89347 1.25547 1.02160 1.01061 0.97770 1.70025 1.35021 1.38218 1.17008 0.85230 0.79185 0.77820 0.78201 1.22417 1.18413 1.22574 0.89368 0.87591 0.89644 0.91591 0.91466 0.88542 0.89202 0.87413 0.91896 0.75792 0.94769 0.91098 0.90884 0.88385 0.94123 0.95668 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 13.68 67.78 0.93 -3.49 16 2 C -0.15 -3.42 3.78 -16.49 -0.06 -3.48 16 3 C -0.11 -2.04 9.09 71.24 0.65 -1.39 16 4 C 0.13 2.86 3.51 30.35 0.11 2.96 16 5 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 6 O -0.39 -9.87 9.84 -148.98 -1.47 -11.34 16 7 C 0.05 0.95 7.63 72.48 0.55 1.50 16 8 C -0.14 -3.19 6.59 31.61 0.21 -2.99 16 9 C -0.14 -3.35 3.34 -10.53 -0.04 -3.39 16 10 H 0.13 2.41 8.13 -2.38 -0.02 2.39 16 11 C 0.52 16.96 5.16 87.66 0.45 17.41 16 12 O -0.58 -23.56 15.89 -3.03 -0.05 -23.61 16 13 N -0.71 -22.15 4.49 -463.07 -2.08 -24.23 16 14 C 0.14 4.70 5.53 86.38 0.48 5.18 16 15 C 0.14 4.88 4.11 41.87 0.17 5.05 16 16 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 17 C -0.14 -4.73 8.04 31.01 0.25 -4.48 16 18 C 0.13 6.05 7.58 83.17 0.63 6.68 16 19 N -0.63 -29.44 3.64 -713.52 -2.60 -32.04 16 20 C -0.20 -10.60 10.54 84.03 0.89 -9.71 16 21 H 0.09 4.28 7.48 -2.91 -0.02 4.26 16 22 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 23 N -0.95 -56.70 11.42 21.65 0.25 -56.45 16 24 Si 0.97 44.45 29.56 68.60 2.03 46.47 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 H 0.09 2.59 6.92 -2.91 -0.02 2.57 16 29 H 0.11 2.40 8.05 -2.91 -0.02 2.37 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.07 1.18 6.99 -2.39 -0.02 1.17 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.80 7.01 -2.39 -0.02 1.78 16 37 H 0.41 11.74 7.32 -92.70 -0.68 11.06 16 38 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 2.62 8.13 -2.38 -0.02 2.60 16 41 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 42 H 0.04 2.13 6.85 -2.38 -0.02 2.12 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.24 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -70.92 354.96 2.07 -68.85 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.30 Total: 26.02 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.68 Total: 6.32 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -4.43 Total: -112.72 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.51 Total: -34.95 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.92 2.07 -68.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038806614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.592 kcal (2) G-P(sol) polarization free energy of solvation -70.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds