Wall clock time and date at job start Tue Mar 31 2020 07:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00316 * 2 1 4 4 C 1.50710 * 120.00017 * 180.02562 * 2 1 3 5 5 H 1.09007 * 110.32809 * 346.81614 * 4 2 1 6 6 O 1.44425 * 110.37472 * 224.44563 * 4 2 1 7 7 C 1.44425 * 105.27376 * 200.65619 * 6 4 2 8 8 C 1.54801 * 104.85689 * 40.45998 * 7 6 4 9 9 C 1.54481 * 110.37030 * 109.06305 * 4 2 1 10 10 H 1.09001 * 110.51098 * 261.59117 * 9 4 2 11 11 C 1.50694 * 110.51020 * 24.16786 * 9 4 2 12 12 O 1.21281 * 120.00390 * 82.15843 * 11 9 4 13 13 N 1.34777 * 120.00074 * 262.15203 * 11 9 4 14 14 C 1.46498 * 120.00170 * 180.02562 * 13 11 9 15 15 C 1.53007 * 109.47440 * 179.97438 * 14 13 11 16 16 H 1.08993 * 112.78053 * 303.72480 * 15 14 13 17 17 C 1.53234 * 113.38263 * 173.00899 * 15 14 13 18 18 C 1.53498 * 83.43001 * 219.29185 * 17 15 14 19 19 N 1.47068 * 87.98519 * 25.90454 * 18 17 15 20 20 C 1.36935 * 136.06350 * 152.84237 * 19 18 17 21 21 H 1.08000 * 120.00546 * 179.97438 * 20 19 18 22 22 C 1.38818 * 119.99502 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00038 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99681 * 180.27441 * 22 20 19 25 25 H 1.48498 * 109.47042 * 179.72511 * 24 22 20 26 26 H 1.48502 * 109.47477 * 299.72411 * 24 22 20 27 27 H 1.48500 * 109.47384 * 59.72381 * 24 22 20 28 28 H 1.08003 * 120.00255 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47516 * 275.22810 * 3 2 1 31 31 H 1.09001 * 109.47354 * 35.23097 * 3 2 1 32 32 H 1.09004 * 109.47056 * 155.22623 * 3 2 1 33 33 H 1.08997 * 110.37032 * 159.34275 * 7 6 4 34 34 H 1.08998 * 110.36930 * 281.57000 * 7 6 4 35 35 H 1.09003 * 110.61099 * 217.50710 * 8 7 6 36 36 H 1.09002 * 110.55046 * 94.70225 * 8 7 6 37 37 H 0.97005 * 119.99979 * 0.02562 * 13 11 9 38 38 H 1.08997 * 109.47674 * 59.99944 * 14 13 11 39 39 H 1.09001 * 109.47046 * 299.99549 * 14 13 11 40 40 H 1.09006 * 114.32242 * 105.66300 * 17 15 14 41 41 H 1.08992 * 114.20192 * 332.91896 * 17 15 14 42 42 H 1.08991 * 113.47037 * 271.12204 * 18 17 15 43 43 H 1.09006 * 113.46296 * 140.68021 * 18 17 15 44 44 H 0.97000 * 119.99623 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0636 -1.3052 -0.0006 5 1 1.3910 -2.1309 0.2322 6 8 3.1520 -1.2578 0.9475 7 6 4.0673 -2.2933 0.5281 8 6 4.0905 -2.2006 -1.0170 9 6 2.7420 -1.5338 -1.3695 10 1 2.1384 -2.1971 -1.9889 11 6 2.9701 -0.2201 -2.0716 12 8 3.9376 0.4564 -1.7934 13 7 2.0991 0.2032 -3.0090 14 6 2.3211 1.4801 -3.6920 15 6 1.1959 1.7215 -4.7004 16 1 1.0949 0.9110 -5.4220 17 6 1.2452 3.1106 -5.3455 18 6 -0.2810 3.0397 -5.1975 19 7 -0.0770 2.1113 -4.0753 20 6 -0.7661 1.7660 -2.9435 21 1 -0.3627 1.0233 -2.2710 22 6 -1.9832 2.3705 -2.6604 23 7 -2.4746 3.2760 -3.4796 24 14 -2.9196 1.9051 -1.1125 25 1 -4.1767 2.6921 -1.0391 26 1 -3.2438 0.4563 -1.1468 27 1 -2.0826 2.1969 0.0789 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 2.1642 1.6665 -1.0234 31 1 1.5183 2.0395 0.5928 32 1 3.0533 1.1531 0.4306 33 1 5.0615 -2.1084 0.9346 34 1 3.7045 -3.2712 0.8445 35 1 4.1526 -3.1945 -1.4602 36 1 4.9222 -1.5800 -1.3506 37 1 1.3251 -0.3377 -3.2314 38 1 3.2770 1.4511 -4.2149 39 1 2.3320 2.2870 -2.9593 40 1 1.5944 3.1139 -6.3781 41 1 1.7192 3.8734 -4.7280 42 1 -0.7793 2.5839 -6.0529 43 1 -0.7327 3.9864 -4.9010 44 1 -3.3252 3.6981 -3.2820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038806615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:27 Heat of formation + Delta-G solvation = 0.133450 kcal Electronic energy + Delta-G solvation = -25699.245592 eV Core-core repulsion = 22233.358029 eV Total energy + Delta-G solvation = -3465.887563 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60029 -38.62495 -37.74164 -34.85454 -33.93760 -32.27637 -32.13994 -28.99012 -28.05036 -27.37796 -26.81860 -23.73311 -23.40949 -22.46609 -21.43670 -20.06395 -19.25129 -18.56946 -17.10273 -16.63732 -16.23110 -15.77484 -15.53392 -15.27196 -14.99695 -14.62961 -13.96478 -13.79441 -13.63499 -13.29122 -13.07951 -12.68982 -12.32062 -12.19098 -11.89341 -11.80638 -11.53959 -11.45490 -11.16784 -11.11849 -11.04846 -11.03468 -10.83022 -10.61721 -10.39690 -9.99074 -9.85665 -9.83696 -9.45886 -9.19205 -8.81533 -8.67035 -8.49701 -6.91165 -5.77544 -3.09527 2.41942 2.94123 3.33364 3.36913 3.41627 3.54941 4.02334 4.39837 4.43127 4.75767 4.84781 5.00518 5.10075 5.18838 5.29853 5.32432 5.32573 5.39779 5.55975 5.63038 5.65565 5.70645 5.76791 5.89159 6.01747 6.10109 6.15429 6.24241 6.28825 6.38623 6.39660 6.57613 6.59125 6.73818 6.79071 6.92334 7.00312 7.17791 7.22977 7.38275 7.58065 7.94212 7.97062 8.61890 9.03131 9.69929 10.62469 11.40078 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.006554 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.195999 B = 4271.458343 C = 5587.322790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.130 4.130 3 C -0.116 4.116 4 C 0.131 3.869 5 H 0.080 0.920 6 O -0.357 6.357 7 C 0.047 3.953 8 C -0.140 4.140 9 C -0.140 4.140 10 H 0.099 0.901 11 C 0.528 3.472 12 O -0.543 6.543 13 N -0.712 5.712 14 C 0.122 3.878 15 C 0.128 3.872 16 H 0.047 0.953 17 C -0.162 4.162 18 C 0.151 3.849 19 N -0.600 5.600 20 C -0.212 4.212 21 H 0.090 0.910 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.898 3.102 25 H -0.293 1.293 26 H -0.283 1.283 27 H -0.279 1.279 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.974 -10.381 2.005 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 C -0.172 4.172 4 C 0.073 3.927 5 H 0.098 0.902 6 O -0.275 6.275 7 C -0.030 4.030 8 C -0.178 4.178 9 C -0.162 4.162 10 H 0.117 0.883 11 C 0.314 3.686 12 O -0.421 6.421 13 N -0.361 5.361 14 C -0.003 4.003 15 C 0.020 3.980 16 H 0.064 0.936 17 C -0.201 4.201 18 C 0.025 3.975 19 N -0.325 5.325 20 C -0.340 4.340 21 H 0.107 0.893 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.729 3.271 25 H -0.219 1.219 26 H -0.210 1.210 27 H -0.206 1.206 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.235 0.765 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.389 -9.708 2.623 14.459 hybrid contribution -1.271 -0.797 0.387 1.549 sum 9.118 -10.504 3.011 14.232 Atomic orbital electron populations 1.23971 0.95004 1.02826 0.99053 1.21410 0.94780 0.94669 1.02123 1.20959 0.99806 0.93248 1.03191 1.21843 0.88835 0.96160 0.85872 0.90193 1.89210 1.32916 1.55232 1.50175 1.23422 0.94745 0.91387 0.93470 1.22989 0.97038 1.01062 0.96699 1.22749 0.98828 0.96396 0.98267 0.88264 1.19890 0.82662 0.86948 0.79091 1.90662 1.30273 1.57034 1.64083 1.45990 1.27229 1.23183 1.39747 1.21805 0.98027 0.85116 0.95322 1.22346 0.87396 0.95611 0.92636 0.93586 1.23610 1.00635 0.97000 0.98847 1.22028 0.90451 0.95833 0.89147 1.45658 1.19387 1.46332 1.21164 1.19020 0.99966 1.18983 0.95983 0.89271 1.24738 0.97762 0.99436 0.98445 1.69806 1.20238 1.29522 1.37119 0.86502 0.79501 0.77888 0.83208 1.21929 1.20967 1.20605 0.88695 0.86793 0.90204 0.92652 0.91338 0.88971 0.92419 0.90237 0.88963 0.76455 0.92464 0.91128 0.92444 0.90282 0.95818 0.91007 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 12.27 29.01 0.36 -2.62 16 2 C -0.13 -2.19 4.46 -101.06 -0.45 -2.64 16 3 C -0.12 -2.15 8.08 36.00 0.29 -1.86 16 4 C 0.13 1.88 3.44 -27.10 -0.09 1.78 16 5 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 6 O -0.36 -5.39 10.55 -35.23 -0.37 -5.77 16 7 C 0.05 0.52 7.64 38.11 0.29 0.81 16 8 C -0.14 -1.57 6.62 -24.99 -0.17 -1.73 16 9 C -0.14 -1.85 3.41 -90.21 -0.31 -2.16 16 10 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 11 C 0.53 8.59 3.88 -10.99 -0.04 8.55 16 12 O -0.54 -10.36 13.98 5.56 0.08 -10.28 16 13 N -0.71 -11.63 4.97 -60.29 -0.30 -11.93 16 14 C 0.12 2.14 5.29 -4.04 -0.02 2.12 16 15 C 0.13 2.38 4.10 -72.53 -0.30 2.09 16 16 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.16 -2.89 8.01 -26.35 -0.21 -3.10 16 18 C 0.15 3.38 7.40 -8.51 -0.06 3.32 16 19 N -0.60 -14.06 3.65 -177.16 -0.65 -14.71 16 20 C -0.21 -5.41 10.55 -15.06 -0.16 -5.57 16 21 H 0.09 2.12 5.69 -52.49 -0.30 1.82 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.55 11.51 55.49 0.64 -25.91 16 24 Si 0.90 21.33 27.74 -169.99 -4.72 16.61 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.42 6.25 56.52 0.35 -6.07 16 28 H 0.09 1.43 7.91 -52.48 -0.42 1.01 16 29 H 0.11 2.26 4.96 -52.49 -0.26 2.00 16 30 H 0.08 1.62 4.57 -51.93 -0.24 1.38 16 31 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.07 1.30 7.04 -51.93 -0.37 0.93 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.19 6.99 -51.93 -0.36 0.83 16 37 H 0.40 6.37 8.36 -40.82 -0.34 6.03 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.42 7.00 -51.93 -0.36 1.06 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.42 8.11 -51.93 -0.42 0.99 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -30.65 340.71 -7.98 -38.64 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.83 Total: 9.52 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.97 Total: -1.30 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.31 Total: -52.55 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.29 Total: -16.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.72 Total: 16.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.65 -7.98 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038806615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.769 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds