Wall clock time and date at job start Tue Mar 31 2020 07:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00316 * 2 1 4 4 C 1.50710 * 120.00017 * 180.02562 * 2 1 3 5 5 H 1.09007 * 110.32809 * 346.81614 * 4 2 1 6 6 O 1.44425 * 110.37472 * 224.44563 * 4 2 1 7 7 C 1.44425 * 105.27376 * 200.65619 * 6 4 2 8 8 C 1.54801 * 104.85689 * 40.45998 * 7 6 4 9 9 C 1.54481 * 110.37030 * 109.06305 * 4 2 1 10 10 H 1.09001 * 110.51098 * 261.59117 * 9 4 2 11 11 C 1.50694 * 110.51020 * 24.16786 * 9 4 2 12 12 O 1.21281 * 120.00390 * 82.15843 * 11 9 4 13 13 N 1.34777 * 120.00074 * 262.15203 * 11 9 4 14 14 C 1.46498 * 120.00170 * 180.02562 * 13 11 9 15 15 C 1.53007 * 109.47440 * 179.97438 * 14 13 11 16 16 H 1.08993 * 112.78053 * 303.72480 * 15 14 13 17 17 C 1.53234 * 113.38263 * 173.00899 * 15 14 13 18 18 C 1.53498 * 83.43001 * 219.29185 * 17 15 14 19 19 N 1.47068 * 87.98519 * 25.90454 * 18 17 15 20 20 C 1.36935 * 136.06350 * 152.84237 * 19 18 17 21 21 H 1.08000 * 120.00546 * 179.97438 * 20 19 18 22 22 C 1.38818 * 119.99502 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00038 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99681 * 180.27441 * 22 20 19 25 25 H 1.48498 * 109.47042 * 179.72511 * 24 22 20 26 26 H 1.48502 * 109.47477 * 299.72411 * 24 22 20 27 27 H 1.48500 * 109.47384 * 59.72381 * 24 22 20 28 28 H 1.08003 * 120.00255 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47516 * 275.22810 * 3 2 1 31 31 H 1.09001 * 109.47354 * 35.23097 * 3 2 1 32 32 H 1.09004 * 109.47056 * 155.22623 * 3 2 1 33 33 H 1.08997 * 110.37032 * 159.34275 * 7 6 4 34 34 H 1.08998 * 110.36930 * 281.57000 * 7 6 4 35 35 H 1.09003 * 110.61099 * 217.50710 * 8 7 6 36 36 H 1.09002 * 110.55046 * 94.70225 * 8 7 6 37 37 H 0.97005 * 119.99979 * 0.02562 * 13 11 9 38 38 H 1.08997 * 109.47674 * 59.99944 * 14 13 11 39 39 H 1.09001 * 109.47046 * 299.99549 * 14 13 11 40 40 H 1.09006 * 114.32242 * 105.66300 * 17 15 14 41 41 H 1.08992 * 114.20192 * 332.91896 * 17 15 14 42 42 H 1.08991 * 113.47037 * 271.12204 * 18 17 15 43 43 H 1.09006 * 113.46296 * 140.68021 * 18 17 15 44 44 H 0.97000 * 119.99623 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0636 -1.3052 -0.0006 5 1 1.3910 -2.1309 0.2322 6 8 3.1520 -1.2578 0.9475 7 6 4.0673 -2.2933 0.5281 8 6 4.0905 -2.2006 -1.0170 9 6 2.7420 -1.5338 -1.3695 10 1 2.1384 -2.1971 -1.9889 11 6 2.9701 -0.2201 -2.0716 12 8 3.9376 0.4564 -1.7934 13 7 2.0991 0.2032 -3.0090 14 6 2.3211 1.4801 -3.6920 15 6 1.1959 1.7215 -4.7004 16 1 1.0949 0.9110 -5.4220 17 6 1.2452 3.1106 -5.3455 18 6 -0.2810 3.0397 -5.1975 19 7 -0.0770 2.1113 -4.0753 20 6 -0.7661 1.7660 -2.9435 21 1 -0.3627 1.0233 -2.2710 22 6 -1.9832 2.3705 -2.6604 23 7 -2.4746 3.2760 -3.4796 24 14 -2.9196 1.9051 -1.1125 25 1 -4.1767 2.6921 -1.0391 26 1 -3.2438 0.4563 -1.1468 27 1 -2.0826 2.1969 0.0789 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 2.1642 1.6665 -1.0234 31 1 1.5183 2.0395 0.5928 32 1 3.0533 1.1531 0.4306 33 1 5.0615 -2.1084 0.9346 34 1 3.7045 -3.2712 0.8445 35 1 4.1526 -3.1945 -1.4602 36 1 4.9222 -1.5800 -1.3506 37 1 1.3251 -0.3377 -3.2314 38 1 3.2770 1.4511 -4.2149 39 1 2.3320 2.2870 -2.9593 40 1 1.5944 3.1139 -6.3781 41 1 1.7192 3.8734 -4.7280 42 1 -0.7793 2.5839 -6.0529 43 1 -0.7327 3.9864 -4.9010 44 1 -3.3252 3.6981 -3.2820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038806615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:26 Heat of formation + Delta-G solvation = -21.198209 kcal Electronic energy + Delta-G solvation = -25700.170602 eV Core-core repulsion = 22233.358029 eV Total energy + Delta-G solvation = -3466.812573 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76514 -40.10631 -39.09270 -36.14412 -35.35306 -34.16086 -33.23607 -30.12317 -29.88307 -28.80349 -28.24451 -25.37840 -24.83829 -23.66262 -22.68253 -21.37147 -20.86871 -19.88442 -18.61430 -18.00812 -17.44174 -17.14193 -16.80667 -16.74559 -16.30146 -16.01229 -15.64259 -15.27671 -14.89058 -14.79510 -14.42031 -14.16143 -13.77432 -13.57550 -13.33028 -13.18797 -12.90804 -12.82280 -12.72877 -12.62233 -12.42411 -12.35901 -12.28309 -12.05537 -11.84942 -11.71127 -11.60550 -11.12317 -10.81168 -10.77616 -10.55907 -10.04307 -9.88375 -8.84314 -7.81724 -5.12036 1.10236 1.43400 1.45537 1.51110 1.69706 2.29255 2.50237 3.02928 3.39269 3.42533 3.49052 3.69331 3.82924 3.94731 4.00471 4.09277 4.18720 4.26544 4.32292 4.35895 4.41590 4.57465 4.64978 4.67894 4.74902 4.78890 4.85530 4.90336 4.92599 4.94574 5.05149 5.07182 5.16016 5.19303 5.39666 5.54969 5.60409 5.66160 5.73238 5.77024 5.94091 6.01162 6.66451 7.00289 7.35470 7.71558 8.69759 9.36680 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.006554 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.195999 B = 4271.458343 C = 5587.322790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.131 4.131 3 C -0.108 4.108 4 C 0.131 3.869 5 H 0.111 0.889 6 O -0.387 6.387 7 C 0.042 3.958 8 C -0.134 4.134 9 C -0.139 4.139 10 H 0.132 0.868 11 C 0.525 3.475 12 O -0.575 6.575 13 N -0.710 5.710 14 C 0.132 3.868 15 C 0.135 3.865 16 H 0.070 0.930 17 C -0.137 4.137 18 C 0.142 3.858 19 N -0.626 5.626 20 C -0.195 4.195 21 H 0.105 0.895 22 C -0.072 4.072 23 N -0.959 5.959 24 Si 0.946 3.054 25 H -0.311 1.311 26 H -0.265 1.265 27 H -0.273 1.273 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.406 0.594 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.022 0.978 43 H 0.033 0.967 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -13.677 1.886 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.131 4.131 3 C -0.165 4.165 4 C 0.073 3.927 5 H 0.129 0.871 6 O -0.307 6.307 7 C -0.034 4.034 8 C -0.171 4.171 9 C -0.161 4.161 10 H 0.150 0.850 11 C 0.313 3.687 12 O -0.456 6.456 13 N -0.360 5.360 14 C 0.007 3.993 15 C 0.029 3.971 16 H 0.087 0.913 17 C -0.176 4.176 18 C 0.016 3.984 19 N -0.352 5.352 20 C -0.324 4.324 21 H 0.122 0.878 22 C -0.264 4.264 23 N -0.609 5.609 24 Si 0.776 3.224 25 H -0.238 1.238 26 H -0.191 1.191 27 H -0.200 1.200 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.052 0.948 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.800 -13.047 2.500 17.768 hybrid contribution -1.570 0.263 0.402 1.642 sum 10.230 -12.785 2.901 16.629 Atomic orbital electron populations 1.23958 0.95132 1.02797 0.99668 1.21515 0.94857 0.95193 1.01535 1.20825 0.99575 0.94514 1.01599 1.21954 0.89128 0.95137 0.86447 0.87135 1.89182 1.33791 1.56990 1.50713 1.23683 0.94573 0.91770 0.93413 1.23003 0.94934 1.02305 0.96905 1.22862 1.00537 0.94965 0.97702 0.85005 1.20507 0.81810 0.87853 0.78532 1.90651 1.31669 1.58352 1.64885 1.45968 1.27492 1.22602 1.39921 1.21547 0.98311 0.85014 0.94401 1.22474 0.85315 0.96630 0.92668 0.91300 1.23432 0.96692 0.96356 1.01127 1.22031 0.93496 0.94024 0.88818 1.45987 1.21035 1.47042 1.21129 1.19469 0.99132 1.17341 0.96417 0.87770 1.25420 0.99406 1.00477 1.01108 1.70002 1.20259 1.31633 1.39039 0.85702 0.77639 0.78222 0.80817 1.23826 1.19063 1.19966 0.85830 0.89708 0.92149 0.93656 0.92198 0.88464 0.89382 0.86565 0.91140 0.75944 0.90684 0.94287 0.88433 0.90620 0.96013 0.94823 0.95023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.86 12.27 67.78 0.83 -5.03 16 2 C -0.13 -4.21 4.46 -16.49 -0.07 -4.29 16 3 C -0.11 -4.07 8.08 71.23 0.58 -3.50 16 4 C 0.13 3.33 3.44 30.35 0.10 3.43 16 5 H 0.11 2.18 7.89 -2.38 -0.02 2.16 16 6 O -0.39 -10.75 10.55 -148.98 -1.57 -12.32 16 7 C 0.04 0.78 7.64 72.60 0.55 1.33 16 8 C -0.13 -2.49 6.62 31.72 0.21 -2.28 16 9 C -0.14 -3.15 3.41 -10.53 -0.04 -3.19 16 10 H 0.13 2.14 8.13 -2.39 -0.02 2.12 16 11 C 0.53 16.08 3.88 87.66 0.34 16.42 16 12 O -0.58 -21.58 13.98 -3.03 -0.04 -21.62 16 13 N -0.71 -21.79 4.97 -463.06 -2.30 -24.09 16 14 C 0.13 4.45 5.29 86.38 0.46 4.91 16 15 C 0.14 4.79 4.10 41.70 0.17 4.96 16 16 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 17 C -0.14 -4.67 8.01 30.84 0.25 -4.42 16 18 C 0.14 6.41 7.40 83.18 0.62 7.03 16 19 N -0.63 -29.22 3.65 -714.40 -2.61 -31.84 16 20 C -0.20 -9.97 10.55 84.04 0.89 -9.08 16 21 H 0.10 4.86 5.69 -2.91 -0.02 4.85 16 22 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 23 N -0.96 -57.49 11.51 21.65 0.25 -57.24 16 24 Si 0.95 44.55 27.74 68.60 1.90 46.45 16 25 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 27 H -0.27 -12.40 6.25 99.48 0.62 -11.78 16 28 H 0.12 3.29 7.91 -2.91 -0.02 3.26 16 29 H 0.08 3.30 4.96 -2.91 -0.01 3.29 16 30 H 0.06 2.50 4.57 -2.39 -0.01 2.49 16 31 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.06 2.31 7.04 -2.38 -0.02 2.29 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.65 6.99 -2.39 -0.02 1.64 16 37 H 0.41 11.76 8.36 -92.70 -0.78 10.98 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.04 1.58 7.00 -2.39 -0.02 1.56 16 40 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.03 1.76 7.12 -2.38 -0.02 1.74 16 44 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -69.89 340.71 1.12 -68.78 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.15 Total: 29.11 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.35 Total: 2.78 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.66 Total: -113.17 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.61 Total: -33.94 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Total: -69.89 1.12 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038806615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.577 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds