Wall clock time and date at job start Tue Mar 31 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00390 * 2 1 4 4 C 1.50705 * 119.99523 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.41358 * 127.78738 * 4 2 1 6 6 O 1.44425 * 110.37158 * 5.48341 * 4 2 1 7 7 C 1.44425 * 105.27208 * 200.65582 * 6 4 2 8 8 C 1.54473 * 104.80566 * 40.50802 * 7 6 4 9 9 C 1.54478 * 110.37310 * 250.09882 * 4 2 1 10 10 H 1.08998 * 110.51335 * 261.59478 * 9 4 2 11 11 C 1.50697 * 110.51197 * 24.16876 * 9 4 2 12 12 O 1.21287 * 120.00125 * 55.07552 * 11 9 4 13 13 N 1.34776 * 120.00281 * 235.08311 * 11 9 4 14 14 C 1.46503 * 119.99804 * 5.37019 * 13 11 9 15 15 C 1.46492 * 120.00465 * 185.37523 * 13 11 9 16 16 C 1.53499 * 114.20849 * 239.99963 * 15 13 11 17 17 N 1.47070 * 87.98738 * 220.34364 * 16 15 13 18 18 C 1.36936 * 136.05647 * 207.08767 * 17 16 15 19 19 H 1.07992 * 120.00007 * 350.38093 * 18 17 16 20 20 C 1.38816 * 119.99594 * 170.38975 * 18 17 16 21 21 N 1.31616 * 119.99635 * 156.44602 * 20 18 17 22 22 Si 1.86792 * 120.00245 * 336.44651 * 20 18 17 23 23 H 1.48496 * 109.47240 * 90.00113 * 22 20 18 24 24 H 1.48501 * 109.47336 * 329.99983 * 22 20 18 25 25 H 1.48503 * 109.47055 * 210.00060 * 22 20 18 26 26 C 1.47071 * 87.88285 * 27.33980 * 17 16 15 27 27 H 1.08007 * 120.00481 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00005 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47198 * 275.08482 * 3 2 1 30 30 H 1.09001 * 109.47082 * 35.08421 * 3 2 1 31 31 H 1.08994 * 109.47274 * 155.07712 * 3 2 1 32 32 H 1.08998 * 110.37563 * 159.34310 * 7 6 4 33 33 H 1.09009 * 110.37144 * 281.67705 * 7 6 4 34 34 H 1.09001 * 110.51290 * 217.37826 * 8 7 6 35 35 H 1.09009 * 110.51067 * 94.66874 * 8 7 6 36 36 H 1.08997 * 109.47040 * 275.32773 * 14 13 11 37 37 H 1.09003 * 109.46983 * 35.32216 * 14 13 11 38 38 H 1.09001 * 109.47357 * 155.32290 * 14 13 11 39 39 H 1.09000 * 113.27981 * 13.06217 * 15 13 11 40 40 H 1.09000 * 113.47176 * 105.56066 * 16 15 13 41 41 H 1.09006 * 113.46171 * 335.12150 * 16 15 13 42 42 H 0.97007 * 120.00404 * 5.10383 * 21 20 18 43 43 H 1.08992 * 113.46806 * 87.44251 * 26 17 16 44 44 H 1.09000 * 113.46599 * 217.87946 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 2.7956 -1.3219 -0.8068 6 8 1.1475 -2.4144 -0.1283 7 6 1.8678 -3.5625 0.3707 8 6 2.6276 -3.0431 1.6114 9 6 2.7592 -1.5239 1.3623 10 1 3.8082 -1.2334 1.3063 11 6 2.0551 -0.7483 2.4457 12 8 0.8667 -0.9059 2.6297 13 7 2.7459 0.1207 3.2100 14 6 4.1532 0.3993 2.9129 15 6 2.0897 0.7865 4.3378 16 6 2.0691 2.3182 4.2391 17 7 2.3583 2.3632 5.6804 18 6 2.1225 3.2388 6.7064 19 1 1.7393 4.2264 6.4963 20 6 2.3761 2.8570 8.0167 21 7 2.6042 3.7709 8.9360 22 14 2.3939 1.0464 8.4752 23 1 3.7686 0.5085 8.3146 24 1 1.4643 0.3019 7.5881 25 1 1.9627 0.8891 9.8876 26 6 3.0180 1.0570 5.5333 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 2.1664 1.6652 -1.0236 30 1 1.5170 2.0402 0.5907 31 1 3.0523 1.1536 0.4330 32 1 1.1727 -4.3526 0.6547 33 1 2.5701 -3.9255 -0.3798 34 1 3.6122 -3.5059 1.6778 35 1 2.0532 -3.2331 2.5182 36 1 4.7805 -0.3586 3.3821 37 1 4.3072 0.3812 1.8340 38 1 4.4189 1.3824 3.3014 39 1 1.1295 0.3427 4.6008 40 1 1.0909 2.7234 3.9798 41 1 2.8711 2.7242 3.6225 42 1 2.5222 4.7120 8.7153 43 1 4.0700 1.1306 5.2581 44 1 2.8483 0.3877 6.3767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044039099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:07 Heat of formation + Delta-G solvation = 20.392261 kcal Electronic energy + Delta-G solvation = -25248.848946 eV Core-core repulsion = 21783.839871 eV Total energy + Delta-G solvation = -3465.009075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88472 -39.23009 -37.60364 -35.05300 -34.66964 -32.58268 -32.07409 -29.00959 -27.98102 -27.17109 -26.79209 -25.29081 -24.35222 -22.91446 -21.68924 -19.83174 -18.96028 -18.34161 -17.72120 -17.32209 -16.42302 -16.08423 -15.87260 -15.48680 -15.31544 -14.96215 -14.00331 -13.91812 -13.64569 -13.40757 -13.24275 -13.12839 -13.00554 -12.65866 -12.27425 -12.06725 -11.84655 -11.81355 -11.78089 -11.46438 -11.41160 -11.33901 -11.25810 -10.94168 -10.74841 -10.40788 -10.02305 -9.61761 -9.44629 -9.26057 -8.92345 -8.62115 -8.26485 -7.22916 -6.39402 -3.25460 2.28772 2.72402 3.08741 3.37915 3.49565 3.64293 3.64375 4.24078 4.43312 4.55639 4.57983 4.77189 4.81656 4.86709 4.99825 5.03530 5.09565 5.12198 5.18474 5.32555 5.37157 5.44329 5.47194 5.51018 5.53367 5.60180 5.67424 5.77170 5.82710 5.87614 5.96289 6.08157 6.14905 6.24128 6.37150 6.49968 6.50614 6.70132 6.95795 7.00892 7.10537 7.59919 8.21605 8.38103 8.92179 9.47110 10.33885 11.10965 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.004407 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.029849 B = 6351.850180 C = 6809.042063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.157 4.157 3 C -0.110 4.110 4 C 0.136 3.864 5 H 0.081 0.919 6 O -0.358 6.358 7 C 0.049 3.951 8 C -0.138 4.138 9 C -0.142 4.142 10 H 0.103 0.897 11 C 0.527 3.473 12 O -0.523 6.523 13 N -0.602 5.602 14 C 0.073 3.927 15 C 0.103 3.897 16 C 0.111 3.889 17 N -0.616 5.616 18 C -0.314 4.314 19 H 0.081 0.919 20 C -0.016 4.016 21 N -0.919 5.919 22 Si 1.062 2.938 23 H -0.293 1.293 24 H -0.286 1.286 25 H -0.294 1.294 26 C 0.096 3.904 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.263 0.737 43 H 0.046 0.954 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -12.805 -20.523 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.078 3.922 5 H 0.098 0.902 6 O -0.277 6.277 7 C -0.028 4.028 8 C -0.176 4.176 9 C -0.164 4.164 10 H 0.121 0.879 11 C 0.314 3.686 12 O -0.398 6.398 13 N -0.335 5.335 14 C -0.071 4.071 15 C -0.001 4.001 16 C -0.017 4.017 17 N -0.344 5.344 18 C -0.440 4.440 19 H 0.098 0.902 20 C -0.217 4.217 21 N -0.560 5.560 22 Si 0.894 3.106 23 H -0.221 1.221 24 H -0.213 1.213 25 H -0.221 1.221 26 C -0.031 4.031 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.409 -13.718 -19.021 23.698 hybrid contribution 0.207 1.156 -1.095 1.606 sum 3.617 -12.562 -20.116 23.991 Atomic orbital electron populations 1.23626 0.95316 1.01960 0.96317 1.21311 0.95887 0.93454 1.05025 1.20751 0.99959 0.94248 1.01762 1.21563 0.90337 0.86555 0.93789 0.90174 1.89155 1.37351 1.16729 1.84419 1.23369 0.95690 0.89857 0.93917 1.22893 1.01795 0.92376 1.00564 1.22865 1.01409 0.96670 0.95484 0.87880 1.20061 0.87259 0.79371 0.81898 1.90707 1.14596 1.65454 1.69011 1.47918 1.11648 1.43400 1.30547 1.21871 0.81868 1.02751 1.00570 1.23544 0.97896 0.93321 0.85337 1.22780 0.98684 0.92670 0.87522 1.45558 1.63874 1.21329 1.03680 1.19942 1.45378 0.93773 0.84860 0.90175 1.25725 0.98330 1.06469 0.91154 1.70933 1.46221 1.01731 1.37094 0.83766 0.76425 0.75406 0.75010 1.22056 1.21293 1.22086 1.23090 0.95731 0.89144 0.95103 0.87420 0.88839 0.91686 0.91344 0.92248 0.88819 0.92157 0.89784 0.89773 0.92535 0.91575 0.89928 0.86064 0.93454 0.94226 0.92636 0.93645 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 12.69 29.02 0.37 -1.46 16 2 C -0.16 -1.92 3.68 -101.07 -0.37 -2.30 16 3 C -0.11 -1.16 9.68 36.00 0.35 -0.81 16 4 C 0.14 1.50 3.45 -27.11 -0.09 1.41 16 5 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 6 O -0.36 -4.47 9.82 -35.23 -0.35 -4.81 16 7 C 0.05 0.44 7.63 37.93 0.29 0.73 16 8 C -0.14 -1.31 6.67 -25.17 -0.17 -1.48 16 9 C -0.14 -1.53 2.84 -90.21 -0.26 -1.79 16 10 H 0.10 0.83 5.73 -51.93 -0.30 0.54 16 11 C 0.53 7.77 4.83 -10.99 -0.05 7.72 16 12 O -0.52 -9.71 14.79 5.55 0.08 -9.63 16 13 N -0.60 -8.82 3.11 -173.55 -0.54 -9.36 16 14 C 0.07 0.79 8.52 59.85 0.51 1.30 16 15 C 0.10 1.93 4.56 -67.68 -0.31 1.62 16 16 C 0.11 2.23 8.23 -8.50 -0.07 2.16 16 17 N -0.62 -15.28 3.56 -184.60 -0.66 -15.94 16 18 C -0.31 -9.08 10.95 -15.06 -0.16 -9.24 16 19 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 21 N -0.92 -28.82 13.70 55.49 0.76 -28.06 16 22 Si 1.06 26.95 25.30 -169.99 -4.30 22.64 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.96 6.64 56.52 0.38 -6.58 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 26 C 0.10 2.02 6.62 -8.37 -0.06 1.96 16 27 H 0.11 1.57 6.90 -52.48 -0.36 1.21 16 28 H 0.09 1.18 8.05 -52.48 -0.42 0.75 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 31 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.97 7.65 -51.92 -0.40 0.57 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.53 5.13 -51.93 -0.27 0.27 16 38 H 0.08 0.97 5.96 -51.93 -0.31 0.66 16 39 H 0.12 2.53 7.33 -51.93 -0.38 2.15 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.73 7.05 -51.93 -0.37 0.37 16 42 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 43 H 0.05 0.88 6.42 -51.93 -0.33 0.55 16 44 H 0.05 1.08 3.79 -51.93 -0.20 0.88 16 LS Contribution 339.42 15.07 5.11 5.11 Total: -1.00 -34.50 339.42 -6.66 -41.16 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.65 Total: -0.37 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -0.12 Total: -0.75 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.44 Total: -53.35 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.26 Total: -14.45 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -4.30 Total: 22.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.50 -6.66 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044039099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.551 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds