Wall clock time and date at job start Tue Mar 31 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00390 * 2 1 4 4 C 1.50705 * 119.99523 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.41358 * 127.78738 * 4 2 1 6 6 O 1.44425 * 110.37158 * 5.48341 * 4 2 1 7 7 C 1.44425 * 105.27208 * 200.65582 * 6 4 2 8 8 C 1.54473 * 104.80566 * 40.50802 * 7 6 4 9 9 C 1.54478 * 110.37310 * 250.09882 * 4 2 1 10 10 H 1.08998 * 110.51335 * 261.59478 * 9 4 2 11 11 C 1.50697 * 110.51197 * 24.16876 * 9 4 2 12 12 O 1.21287 * 120.00125 * 55.07552 * 11 9 4 13 13 N 1.34776 * 120.00281 * 235.08311 * 11 9 4 14 14 C 1.46503 * 119.99804 * 5.37019 * 13 11 9 15 15 C 1.46492 * 120.00465 * 185.37523 * 13 11 9 16 16 C 1.53499 * 114.20849 * 239.99963 * 15 13 11 17 17 N 1.47070 * 87.98738 * 220.34364 * 16 15 13 18 18 C 1.36936 * 136.05647 * 207.08767 * 17 16 15 19 19 H 1.07992 * 120.00007 * 350.38093 * 18 17 16 20 20 C 1.38816 * 119.99594 * 170.38975 * 18 17 16 21 21 N 1.31616 * 119.99635 * 156.44602 * 20 18 17 22 22 Si 1.86792 * 120.00245 * 336.44651 * 20 18 17 23 23 H 1.48496 * 109.47240 * 90.00113 * 22 20 18 24 24 H 1.48501 * 109.47336 * 329.99983 * 22 20 18 25 25 H 1.48503 * 109.47055 * 210.00060 * 22 20 18 26 26 C 1.47071 * 87.88285 * 27.33980 * 17 16 15 27 27 H 1.08007 * 120.00481 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00005 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47198 * 275.08482 * 3 2 1 30 30 H 1.09001 * 109.47082 * 35.08421 * 3 2 1 31 31 H 1.08994 * 109.47274 * 155.07712 * 3 2 1 32 32 H 1.08998 * 110.37563 * 159.34310 * 7 6 4 33 33 H 1.09009 * 110.37144 * 281.67705 * 7 6 4 34 34 H 1.09001 * 110.51290 * 217.37826 * 8 7 6 35 35 H 1.09009 * 110.51067 * 94.66874 * 8 7 6 36 36 H 1.08997 * 109.47040 * 275.32773 * 14 13 11 37 37 H 1.09003 * 109.46983 * 35.32216 * 14 13 11 38 38 H 1.09001 * 109.47357 * 155.32290 * 14 13 11 39 39 H 1.09000 * 113.27981 * 13.06217 * 15 13 11 40 40 H 1.09000 * 113.47176 * 105.56066 * 16 15 13 41 41 H 1.09006 * 113.46171 * 335.12150 * 16 15 13 42 42 H 0.97007 * 120.00404 * 5.10383 * 21 20 18 43 43 H 1.08992 * 113.46806 * 87.44251 * 26 17 16 44 44 H 1.09000 * 113.46599 * 217.87946 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 2.7956 -1.3219 -0.8068 6 8 1.1475 -2.4144 -0.1283 7 6 1.8678 -3.5625 0.3707 8 6 2.6276 -3.0431 1.6114 9 6 2.7592 -1.5239 1.3623 10 1 3.8082 -1.2334 1.3063 11 6 2.0551 -0.7483 2.4457 12 8 0.8667 -0.9059 2.6297 13 7 2.7459 0.1207 3.2100 14 6 4.1532 0.3993 2.9129 15 6 2.0897 0.7865 4.3378 16 6 2.0691 2.3182 4.2391 17 7 2.3583 2.3632 5.6804 18 6 2.1225 3.2388 6.7064 19 1 1.7393 4.2264 6.4963 20 6 2.3761 2.8570 8.0167 21 7 2.6042 3.7709 8.9360 22 14 2.3939 1.0464 8.4752 23 1 3.7686 0.5085 8.3146 24 1 1.4643 0.3019 7.5881 25 1 1.9627 0.8891 9.8876 26 6 3.0180 1.0570 5.5333 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 2.1664 1.6652 -1.0236 30 1 1.5170 2.0402 0.5907 31 1 3.0523 1.1536 0.4330 32 1 1.1727 -4.3526 0.6547 33 1 2.5701 -3.9255 -0.3798 34 1 3.6122 -3.5059 1.6778 35 1 2.0532 -3.2331 2.5182 36 1 4.7805 -0.3586 3.3821 37 1 4.3072 0.3812 1.8340 38 1 4.4189 1.3824 3.3014 39 1 1.1295 0.3427 4.6008 40 1 1.0909 2.7234 3.9798 41 1 2.8711 2.7242 3.6225 42 1 2.5222 4.7120 8.7153 43 1 4.0700 1.1306 5.2581 44 1 2.8483 0.3877 6.3767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044039099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:07 Heat of formation + Delta-G solvation = -4.497816 kcal Electronic energy + Delta-G solvation = -25249.928261 eV Core-core repulsion = 21783.839871 eV Total energy + Delta-G solvation = -3466.088390 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92722 -40.54903 -38.88803 -36.02373 -35.92205 -34.47749 -33.18085 -30.14326 -29.42116 -28.10853 -27.85097 -26.96848 -25.58194 -24.09045 -22.89538 -21.24475 -20.23757 -19.64230 -19.30572 -18.52877 -17.54914 -17.27361 -16.92272 -16.83163 -16.38065 -16.15376 -15.66731 -15.27901 -14.97128 -14.68404 -14.31523 -14.01103 -13.95171 -13.76896 -13.53541 -13.41449 -13.34786 -13.07936 -12.96503 -12.68984 -12.60398 -12.53440 -12.25569 -12.16134 -12.10107 -11.81507 -11.62378 -11.20599 -10.78253 -10.75504 -10.60971 -9.88984 -9.52214 -9.28579 -8.71008 -5.49560 1.31757 1.34011 1.48244 1.62460 1.65565 1.91936 2.45960 2.86580 2.90458 3.24989 3.38950 3.53580 3.61808 3.81627 4.02039 4.08696 4.17801 4.20453 4.22889 4.28993 4.32476 4.40186 4.50680 4.55659 4.61315 4.62607 4.68667 4.75581 4.82958 4.84455 4.89779 4.97026 5.04675 5.05726 5.11294 5.15770 5.18215 5.60172 5.64954 5.78975 5.91850 6.12949 6.47843 6.64673 7.25487 7.28161 8.23477 8.81124 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.004407 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.029849 B = 6351.850180 C = 6809.042063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.149 4.149 3 C -0.110 4.110 4 C 0.130 3.870 5 H 0.117 0.883 6 O -0.390 6.390 7 C 0.043 3.957 8 C -0.136 4.136 9 C -0.135 4.135 10 H 0.143 0.857 11 C 0.523 3.477 12 O -0.569 6.569 13 N -0.599 5.599 14 C 0.061 3.939 15 C 0.126 3.874 16 C 0.115 3.885 17 N -0.650 5.650 18 C -0.304 4.304 19 H 0.048 0.952 20 C -0.070 4.070 21 N -0.953 5.953 22 Si 1.102 2.898 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.298 1.298 26 C 0.096 3.904 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 -15.128 -22.933 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.166 4.166 4 C 0.072 3.928 5 H 0.134 0.866 6 O -0.310 6.310 7 C -0.033 4.033 8 C -0.174 4.174 9 C -0.156 4.156 10 H 0.161 0.839 11 C 0.312 3.688 12 O -0.447 6.447 13 N -0.332 5.332 14 C -0.080 4.080 15 C 0.020 3.980 16 C -0.012 4.012 17 N -0.379 5.379 18 C -0.431 4.431 19 H 0.066 0.934 20 C -0.264 4.264 21 N -0.597 5.597 22 Si 0.929 3.071 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.225 1.225 26 C -0.030 4.030 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.586 -16.060 -21.500 27.632 hybrid contribution -0.808 1.917 -0.475 2.134 sum 5.778 -14.143 -21.975 26.764 Atomic orbital electron populations 1.23530 0.96340 1.00987 0.99539 1.21720 0.95650 0.95251 1.02292 1.20789 1.00162 0.92739 1.02941 1.21836 0.90529 0.85405 0.95011 0.86605 1.89147 1.38969 1.18064 1.84779 1.23593 0.96126 0.88926 0.94629 1.22943 1.03394 0.91645 0.99382 1.22959 1.02723 0.96720 0.93227 0.83913 1.20866 0.86842 0.78894 0.82211 1.90704 1.17013 1.66720 1.70302 1.47895 1.13213 1.42952 1.29136 1.22228 0.79328 1.03147 1.03327 1.22755 0.96573 0.92384 0.86259 1.22927 0.98882 0.94074 0.85322 1.45609 1.65276 1.22208 1.04765 1.19804 1.43605 0.93263 0.86438 0.93404 1.26904 0.98647 1.09490 0.91375 1.71030 1.49371 1.01317 1.37956 0.83235 0.77989 0.71346 0.74553 1.19221 1.20319 1.22541 1.23273 0.97361 0.86718 0.95614 0.89373 0.89131 0.89603 0.93239 0.90345 0.89046 0.88950 0.86002 0.92555 0.90197 0.87909 0.90628 0.88842 0.94729 0.91376 0.94042 0.90603 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 12.69 67.78 0.86 -3.75 16 2 C -0.15 -3.38 3.68 -16.49 -0.06 -3.44 16 3 C -0.11 -1.98 9.68 71.23 0.69 -1.29 16 4 C 0.13 2.41 3.45 30.35 0.10 2.52 16 5 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 6 O -0.39 -9.00 9.82 -148.98 -1.46 -10.46 16 7 C 0.04 0.66 7.63 72.48 0.55 1.21 16 8 C -0.14 -2.05 6.67 31.61 0.21 -1.83 16 9 C -0.14 -2.30 2.84 -10.53 -0.03 -2.33 16 10 H 0.14 1.29 5.73 -2.39 -0.01 1.27 16 11 C 0.52 14.13 4.83 87.66 0.42 14.55 16 12 O -0.57 -21.10 14.79 -3.05 -0.05 -21.15 16 13 N -0.60 -15.66 3.11 -821.39 -2.56 -18.22 16 14 C 0.06 0.99 8.52 127.77 1.09 2.08 16 15 C 0.13 4.54 4.56 45.55 0.21 4.74 16 16 C 0.11 4.50 8.23 83.18 0.68 5.18 16 17 N -0.65 -31.95 3.56 -737.94 -2.63 -34.58 16 18 C -0.30 -17.97 10.95 84.03 0.92 -17.05 16 19 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 20 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 21 N -0.95 -61.37 13.70 21.65 0.30 -61.08 16 22 Si 1.10 54.39 25.30 68.60 1.74 56.13 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -13.06 6.64 99.48 0.66 -12.40 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 26 C 0.10 3.83 6.62 83.27 0.55 4.38 16 27 H 0.09 2.73 6.90 -2.91 -0.02 2.71 16 28 H 0.09 2.41 8.05 -2.91 -0.02 2.39 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.08 1.09 6.55 -2.39 -0.02 1.08 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.18 7.65 -2.38 -0.02 1.16 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.94 5.13 -2.39 -0.01 0.93 16 38 H 0.07 1.40 5.96 -2.39 -0.01 1.38 16 39 H 0.09 3.93 7.33 -2.39 -0.02 3.92 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 2.33 7.05 -2.38 -0.02 2.31 16 42 H 0.25 16.14 8.73 -92.70 -0.81 15.33 16 43 H 0.08 2.62 6.42 -2.39 -0.02 2.60 16 44 H 0.04 1.62 3.79 -2.39 -0.01 1.61 16 Total: -1.00 -79.89 339.42 2.92 -76.97 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.91 Total: 11.16 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.67 Total: 1.23 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -4.89 Total: -113.88 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.51 Total: -31.61 kcal Atomic # 14 Polarization: 54.39 SS G_CDS: 1.74 Total: 56.13 kcal Total: -79.89 2.92 -76.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044039099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.474 kcal (2) G-P(sol) polarization free energy of solvation -79.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds