Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.47100 * 120.00138 * 2 1 4 4 O 1.21614 * 120.00772 * 220.18457 * 3 2 1 5 5 N 1.34776 * 119.99890 * 40.18908 * 3 2 1 6 6 C 1.46504 * 119.99852 * 3.92436 * 5 3 2 7 7 C 1.46504 * 120.00353 * 183.93379 * 5 3 2 8 8 H 1.09003 * 110.88385 * 3.87214 * 7 5 3 9 9 C 1.54897 * 111.04085 * 127.78067 * 7 5 3 10 10 N 1.47426 * 104.83352 * 155.09612 * 9 7 5 11 11 C 1.36936 * 125.65024 * 155.82384 * 10 9 7 12 12 H 1.07997 * 120.00136 * 354.82811 * 11 10 9 13 13 C 1.38813 * 120.00351 * 174.82976 * 11 10 9 14 14 N 1.31625 * 119.99743 * 5.27359 * 13 11 10 15 15 Si 1.86796 * 120.00110 * 185.27687 * 13 11 10 16 16 H 1.48504 * 109.47355 * 95.00032 * 15 13 11 17 17 H 1.48505 * 109.46838 * 214.99276 * 15 13 11 18 18 H 1.48499 * 109.47393 * 334.99573 * 15 13 11 19 19 C 1.47025 * 108.70251 * 335.87398 * 10 9 7 20 20 C 1.54323 * 107.26791 * 1.05603 * 19 10 9 21 21 H 1.09001 * 110.71511 * 263.82965 * 20 19 10 22 22 O 1.42896 * 110.71518 * 140.56156 * 20 19 10 23 23 C 1.32989 * 120.00273 * 180.02562 * 2 1 3 24 24 C 1.51407 * 136.32122 * 179.63073 * 23 2 1 25 25 C 1.53375 * 87.52036 * 206.05479 * 24 23 2 26 26 C 1.51412 * 136.31474 * 359.97438 * 23 2 1 27 27 H 1.09005 * 109.47613 * 86.80031 * 1 2 3 28 28 H 1.09001 * 109.47483 * 206.80377 * 1 2 3 29 29 H 1.09003 * 109.47158 * 326.80210 * 1 2 3 30 30 H 1.08996 * 109.47133 * 263.95856 * 6 5 3 31 31 H 1.09000 * 109.47020 * 23.96696 * 6 5 3 32 32 H 1.09009 * 109.46870 * 143.96314 * 6 5 3 33 33 H 1.09004 * 110.36913 * 273.93395 * 9 7 5 34 34 H 1.09004 * 110.37151 * 36.15020 * 9 7 5 35 35 H 0.96996 * 119.99961 * 180.02562 * 14 13 11 36 36 H 1.09003 * 109.88082 * 241.63971 * 19 10 9 37 37 H 1.09001 * 109.87920 * 120.47464 * 19 10 9 38 38 H 0.96700 * 114.00830 * 66.47652 * 22 20 19 39 39 H 1.09001 * 113.55638 * 320.63343 * 24 23 2 40 40 H 1.08997 * 113.56545 * 91.36679 * 24 23 2 41 41 H 1.09000 * 113.96767 * 220.29027 * 25 24 23 42 42 H 1.09001 * 113.71033 * 88.80586 * 25 24 23 43 43 H 1.08990 * 113.56232 * 268.62838 * 26 23 2 44 44 H 1.09001 * 113.55773 * 39.29095 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2739 0.0000 4 8 3.2433 1.3983 -0.6795 5 7 1.8072 2.3033 0.7532 6 6 0.6524 2.1272 1.6373 7 6 2.4888 3.5985 0.6878 8 1 3.2794 3.5841 -0.0624 9 6 1.4823 4.7432 0.4118 10 7 2.1245 5.9510 0.9617 11 6 1.8714 7.2384 0.5693 12 1 1.2097 7.4292 -0.2625 13 6 2.4655 8.2981 1.2408 14 7 3.3513 8.0647 2.1859 15 14 2.0077 10.0555 0.8031 16 1 0.9430 10.5331 1.7215 17 1 3.2034 10.9262 0.9362 18 1 1.5131 10.1043 -0.5963 19 6 3.0824 5.5444 2.0003 20 6 3.0479 4.0035 2.0773 21 1 2.3807 3.6720 2.8730 22 8 4.3629 3.4773 2.2661 23 6 2.1719 -1.1517 -0.0005 24 6 3.6250 -1.5771 -0.0074 25 6 3.1708 -2.8815 -0.6743 26 6 1.8138 -2.6228 -0.0007 27 1 -0.3634 0.0574 -1.0261 28 1 -0.3634 -0.9172 0.4634 29 1 -0.3633 0.8600 0.5627 30 1 -0.2483 2.4763 1.1324 31 1 0.5433 1.0717 1.8867 32 1 0.8030 2.7026 2.5508 33 1 1.3193 4.8549 -0.6602 34 1 0.5379 4.5489 0.9202 35 1 3.7662 8.8052 2.6554 36 1 2.7910 5.9702 2.9605 37 1 4.0843 5.8799 1.7322 38 1 4.7578 3.7020 3.1197 39 1 4.2565 -0.9599 -0.6465 40 1 4.0421 -1.7197 0.9894 41 1 3.6834 -3.7696 -0.3048 42 1 3.1394 -2.8295 -1.7627 43 1 1.7343 -3.0520 0.9980 44 1 0.9591 -2.8631 -0.6332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047378960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = 3.846141 kcal Electronic energy + Delta-G solvation = -24571.604035 eV Core-core repulsion = 21105.877467 eV Total energy + Delta-G solvation = -3465.726569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.20122 -38.73310 -37.56812 -35.26168 -34.84679 -33.16264 -31.65124 -28.54257 -27.54653 -27.12689 -26.19760 -25.55256 -24.51863 -22.85057 -20.85504 -20.39866 -19.21482 -17.80824 -17.08164 -16.92706 -16.24273 -15.94998 -15.55049 -15.20910 -14.75231 -14.29213 -14.11924 -13.99104 -13.43485 -13.16555 -12.79603 -12.63350 -12.57510 -12.57221 -12.20713 -12.10546 -12.07069 -11.88560 -11.39965 -11.24748 -11.20387 -11.05738 -10.86571 -10.80588 -10.52732 -10.14399 -9.94515 -9.80493 -9.49540 -9.22569 -8.85879 -8.69542 -8.28165 -6.91434 -5.77269 -3.12068 1.48661 3.07874 3.30033 3.38280 3.43767 3.45849 4.21697 4.35828 4.45259 4.57460 4.70001 4.85722 4.94782 5.11729 5.22341 5.27309 5.38493 5.38919 5.46628 5.46701 5.52145 5.58144 5.61639 5.64895 5.70031 5.78349 5.79585 5.90581 5.97740 6.04722 6.09386 6.14771 6.21514 6.50077 6.62506 6.65419 6.94288 7.37460 7.46858 7.65934 7.73881 8.16694 8.22685 8.43584 9.13779 9.74091 10.37819 11.34316 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.003524 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.019198 B = 7942.843101 C = 8273.489346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.151 4.151 3 C 0.560 3.440 4 O -0.535 6.535 5 N -0.597 5.597 6 C 0.071 3.929 7 C 0.134 3.866 8 H 0.114 0.886 9 C 0.133 3.867 10 N -0.599 5.599 11 C -0.231 4.231 12 H 0.081 0.919 13 C -0.006 4.006 14 N -0.921 5.921 15 Si 0.915 3.085 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.153 3.847 20 C 0.065 3.935 21 H 0.055 0.945 22 O -0.560 6.560 23 C -0.090 4.090 24 C -0.110 4.110 25 C -0.138 4.138 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.372 0.628 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -20.216 0.569 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C 0.349 3.651 4 O -0.413 6.413 5 N -0.329 5.329 6 C -0.072 4.072 7 C 0.030 3.970 8 H 0.132 0.868 9 C 0.005 3.995 10 N -0.327 5.327 11 C -0.359 4.359 12 H 0.099 0.901 13 C -0.202 4.202 14 N -0.568 5.568 15 Si 0.745 3.255 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.205 1.205 19 C 0.027 3.973 20 C 0.004 3.996 21 H 0.073 0.927 22 O -0.364 6.364 23 C -0.092 4.092 24 C -0.147 4.147 25 C -0.175 4.175 26 C -0.139 4.139 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.219 0.781 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.166 -20.158 -0.337 20.812 hybrid contribution -0.197 1.284 0.495 1.390 sum -5.363 -18.874 0.158 19.622 Atomic orbital electron populations 1.21230 0.90277 1.03898 1.03084 1.20403 0.96018 0.91344 1.07642 1.18291 0.83961 0.83382 0.79481 1.90779 1.25393 1.82665 1.42427 1.47618 1.31426 1.11364 1.42510 1.22100 0.88286 1.02296 0.94523 1.22379 0.95712 0.81035 0.97868 0.86841 1.21749 0.93722 0.86151 0.97843 1.44241 1.45278 1.00841 1.42311 1.19085 1.24133 0.80474 1.12206 0.90135 1.24837 0.98878 0.98145 0.98383 1.69952 1.29968 1.30021 1.26854 0.86058 0.77442 0.84206 0.77811 1.21564 1.21683 1.20532 1.21841 0.95327 0.86571 0.93539 1.23552 0.83455 0.96516 0.96034 0.92704 1.86515 1.31005 1.77607 1.41265 1.23077 0.97799 0.93511 0.94768 1.22200 0.94356 0.96464 1.01702 1.22647 0.96609 0.97826 1.00405 1.22236 0.98382 0.91809 1.01465 0.91425 0.91489 0.89255 0.91933 0.90208 0.91093 0.93448 0.95593 0.93645 0.93153 0.92537 0.78133 0.89568 0.88899 0.90640 0.89771 0.88568 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.18 36.00 0.33 -0.90 16 2 C -0.15 -1.98 5.06 -102.85 -0.52 -2.50 16 3 C 0.56 9.66 7.26 -12.67 -0.09 9.57 16 4 O -0.54 -11.35 15.48 5.26 0.08 -11.27 16 5 N -0.60 -9.83 2.91 -172.87 -0.50 -10.33 16 6 C 0.07 0.86 7.48 59.85 0.45 1.31 16 7 C 0.13 2.68 3.17 -65.79 -0.21 2.47 16 8 H 0.11 2.64 7.03 -51.93 -0.37 2.27 16 9 C 0.13 2.80 6.79 -2.53 -0.02 2.78 16 10 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 11 C -0.23 -6.43 10.27 -15.06 -0.15 -6.59 16 12 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 13 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 14 N -0.92 -26.81 10.35 55.49 0.57 -26.24 16 15 Si 0.91 22.01 29.56 -169.99 -5.02 16.98 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.15 3.72 5.15 -3.06 -0.02 3.70 16 20 C 0.06 1.29 3.91 -24.90 -0.10 1.19 16 21 H 0.06 0.98 6.35 -51.93 -0.33 0.65 16 22 O -0.56 -10.83 13.39 -35.23 -0.47 -11.30 16 23 C -0.09 -1.07 6.55 -100.48 -0.66 -1.73 16 24 C -0.11 -1.28 7.56 -27.56 -0.21 -1.49 16 25 C -0.14 -1.19 8.17 -26.19 -0.21 -1.40 16 26 C -0.10 -0.85 7.66 -27.39 -0.21 -1.06 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.51 7.83 -51.93 -0.41 0.10 16 29 H 0.09 0.80 3.81 -51.93 -0.20 0.60 16 30 H 0.06 0.67 6.99 -51.93 -0.36 0.31 16 31 H 0.08 0.79 5.53 -51.93 -0.29 0.50 16 32 H 0.07 0.87 6.38 -51.92 -0.33 0.54 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.51 6.86 -51.93 -0.36 0.16 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 36 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 37 H 0.06 1.56 7.45 -51.93 -0.39 1.17 16 38 H 0.37 5.55 9.12 45.56 0.42 5.97 16 39 H 0.09 1.21 7.61 -51.93 -0.40 0.82 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -34.11 345.55 -8.32 -42.43 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.89 Total: 5.40 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.71 Total: 5.08 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.51 Total: -52.52 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.39 Total: -22.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.11 -8.32 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047378960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.274 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds