Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.47100 * 120.00138 * 2 1 4 4 O 1.21614 * 120.00772 * 220.18457 * 3 2 1 5 5 N 1.34776 * 119.99890 * 40.18908 * 3 2 1 6 6 C 1.46504 * 119.99852 * 3.92436 * 5 3 2 7 7 C 1.46504 * 120.00353 * 183.93379 * 5 3 2 8 8 H 1.09003 * 110.88385 * 3.87214 * 7 5 3 9 9 C 1.54897 * 111.04085 * 127.78067 * 7 5 3 10 10 N 1.47426 * 104.83352 * 155.09612 * 9 7 5 11 11 C 1.36936 * 125.65024 * 155.82384 * 10 9 7 12 12 H 1.07997 * 120.00136 * 354.82811 * 11 10 9 13 13 C 1.38813 * 120.00351 * 174.82976 * 11 10 9 14 14 N 1.31625 * 119.99743 * 5.27359 * 13 11 10 15 15 Si 1.86796 * 120.00110 * 185.27687 * 13 11 10 16 16 H 1.48504 * 109.47355 * 95.00032 * 15 13 11 17 17 H 1.48505 * 109.46838 * 214.99276 * 15 13 11 18 18 H 1.48499 * 109.47393 * 334.99573 * 15 13 11 19 19 C 1.47025 * 108.70251 * 335.87398 * 10 9 7 20 20 C 1.54323 * 107.26791 * 1.05603 * 19 10 9 21 21 H 1.09001 * 110.71511 * 263.82965 * 20 19 10 22 22 O 1.42896 * 110.71518 * 140.56156 * 20 19 10 23 23 C 1.32989 * 120.00273 * 180.02562 * 2 1 3 24 24 C 1.51407 * 136.32122 * 179.63073 * 23 2 1 25 25 C 1.53375 * 87.52036 * 206.05479 * 24 23 2 26 26 C 1.51412 * 136.31474 * 359.97438 * 23 2 1 27 27 H 1.09005 * 109.47613 * 86.80031 * 1 2 3 28 28 H 1.09001 * 109.47483 * 206.80377 * 1 2 3 29 29 H 1.09003 * 109.47158 * 326.80210 * 1 2 3 30 30 H 1.08996 * 109.47133 * 263.95856 * 6 5 3 31 31 H 1.09000 * 109.47020 * 23.96696 * 6 5 3 32 32 H 1.09009 * 109.46870 * 143.96314 * 6 5 3 33 33 H 1.09004 * 110.36913 * 273.93395 * 9 7 5 34 34 H 1.09004 * 110.37151 * 36.15020 * 9 7 5 35 35 H 0.96996 * 119.99961 * 180.02562 * 14 13 11 36 36 H 1.09003 * 109.88082 * 241.63971 * 19 10 9 37 37 H 1.09001 * 109.87920 * 120.47464 * 19 10 9 38 38 H 0.96700 * 114.00830 * 66.47652 * 22 20 19 39 39 H 1.09001 * 113.55638 * 320.63343 * 24 23 2 40 40 H 1.08997 * 113.56545 * 91.36679 * 24 23 2 41 41 H 1.09000 * 113.96767 * 220.29027 * 25 24 23 42 42 H 1.09001 * 113.71033 * 88.80586 * 25 24 23 43 43 H 1.08990 * 113.56232 * 268.62838 * 26 23 2 44 44 H 1.09001 * 113.55773 * 39.29095 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2424 1.2739 0.0000 4 8 3.2433 1.3983 -0.6795 5 7 1.8072 2.3033 0.7532 6 6 0.6524 2.1272 1.6373 7 6 2.4888 3.5985 0.6878 8 1 3.2794 3.5841 -0.0624 9 6 1.4823 4.7432 0.4118 10 7 2.1245 5.9510 0.9617 11 6 1.8714 7.2384 0.5693 12 1 1.2097 7.4292 -0.2625 13 6 2.4655 8.2981 1.2408 14 7 3.3513 8.0647 2.1859 15 14 2.0077 10.0555 0.8031 16 1 0.9430 10.5331 1.7215 17 1 3.2034 10.9262 0.9362 18 1 1.5131 10.1043 -0.5963 19 6 3.0824 5.5444 2.0003 20 6 3.0479 4.0035 2.0773 21 1 2.3807 3.6720 2.8730 22 8 4.3629 3.4773 2.2661 23 6 2.1719 -1.1517 -0.0005 24 6 3.6250 -1.5771 -0.0074 25 6 3.1708 -2.8815 -0.6743 26 6 1.8138 -2.6228 -0.0007 27 1 -0.3634 0.0574 -1.0261 28 1 -0.3634 -0.9172 0.4634 29 1 -0.3633 0.8600 0.5627 30 1 -0.2483 2.4763 1.1324 31 1 0.5433 1.0717 1.8867 32 1 0.8030 2.7026 2.5508 33 1 1.3193 4.8549 -0.6602 34 1 0.5379 4.5489 0.9202 35 1 3.7662 8.8052 2.6554 36 1 2.7910 5.9702 2.9605 37 1 4.0843 5.8799 1.7322 38 1 4.7578 3.7020 3.1197 39 1 4.2565 -0.9599 -0.6465 40 1 4.0421 -1.7197 0.9894 41 1 3.6834 -3.7696 -0.3048 42 1 3.1394 -2.8295 -1.7627 43 1 1.7343 -3.0520 0.9980 44 1 0.9591 -2.8631 -0.6332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047378960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = -20.791068 kcal Electronic energy + Delta-G solvation = -24572.672385 eV Core-core repulsion = 21105.877467 eV Total energy + Delta-G solvation = -3466.794918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48367 -39.90785 -38.95348 -36.78497 -36.47610 -34.43227 -33.36768 -30.33737 -29.04941 -28.41676 -27.13487 -26.41254 -26.29816 -24.01799 -22.33534 -21.98569 -20.64123 -19.05214 -18.93471 -18.37560 -17.63780 -17.15592 -16.73866 -16.38624 -16.28101 -15.78124 -15.70488 -15.14146 -14.75458 -14.54262 -14.33780 -14.16414 -13.86817 -13.68093 -13.36704 -13.31977 -13.18929 -13.04305 -12.87527 -12.77088 -12.75432 -12.66840 -12.07755 -12.04832 -11.90300 -11.86796 -11.61105 -11.36017 -10.99990 -10.77573 -10.64519 -9.81962 -9.63662 -8.97672 -7.90257 -5.28190 0.48996 1.45829 1.47709 1.56859 1.81491 2.05246 2.47279 3.09864 3.29376 3.32908 3.55321 3.57947 3.80117 3.82655 3.92864 4.03463 4.05127 4.24321 4.27521 4.38596 4.44578 4.47658 4.61648 4.73576 4.75433 4.77269 4.80528 4.84250 4.90027 5.01657 5.03846 5.06448 5.12330 5.35177 5.37906 5.38395 5.38462 5.50408 5.62395 5.77318 6.10550 6.41221 6.81262 7.01553 7.13332 7.66756 8.30237 9.19890 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.003524 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.019198 B = 7942.843101 C = 8273.489346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.169 4.169 3 C 0.550 3.450 4 O -0.591 6.591 5 N -0.595 5.595 6 C 0.062 3.938 7 C 0.145 3.855 8 H 0.071 0.929 9 C 0.136 3.864 10 N -0.621 5.621 11 C -0.248 4.248 12 H 0.086 0.914 13 C -0.062 4.062 14 N -0.949 5.949 15 Si 0.983 3.017 16 H -0.281 1.281 17 H -0.296 1.296 18 H -0.269 1.269 19 C 0.165 3.835 20 C 0.083 3.917 21 H 0.087 0.913 22 O -0.573 6.573 23 C -0.093 4.093 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.083 4.083 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.249 0.751 36 H 0.029 0.971 37 H 0.012 0.988 38 H 0.391 0.609 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 -22.563 1.209 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.341 3.659 4 O -0.472 6.472 5 N -0.325 5.325 6 C -0.079 4.079 7 C 0.039 3.961 8 H 0.090 0.910 9 C 0.010 3.990 10 N -0.349 5.349 11 C -0.377 4.377 12 H 0.104 0.896 13 C -0.255 4.255 14 N -0.597 5.597 15 Si 0.811 3.189 16 H -0.208 1.208 17 H -0.223 1.223 18 H -0.193 1.193 19 C 0.039 3.961 20 C 0.023 3.977 21 H 0.104 0.896 22 O -0.380 6.380 23 C -0.095 4.095 24 C -0.165 4.165 25 C -0.166 4.166 26 C -0.120 4.120 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.031 0.969 38 H 0.241 0.759 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.139 0.861 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.844 -22.538 0.320 23.866 hybrid contribution 0.723 1.964 0.272 2.110 sum -7.120 -20.574 0.592 21.780 Atomic orbital electron populations 1.21255 0.87322 1.05645 1.03565 1.20420 0.97715 0.89219 1.09880 1.19164 0.83518 0.84766 0.78410 1.90749 1.28063 1.83721 1.44689 1.47657 1.32200 1.09640 1.43052 1.22475 0.87065 1.04520 0.93838 1.21885 0.94738 0.82848 0.96650 0.91050 1.21848 0.94678 0.84915 0.97542 1.44514 1.45923 1.01601 1.42824 1.19480 1.23995 0.81794 1.12389 0.89623 1.25709 0.98995 1.02177 0.98650 1.70162 1.30935 1.30742 1.27897 0.84998 0.76832 0.79001 0.78093 1.20802 1.22255 1.19327 1.21579 0.92738 0.89685 0.92088 1.23340 0.84305 0.93101 0.96968 0.89558 1.86487 1.31096 1.77278 1.43100 1.23606 0.98053 0.95342 0.92473 1.22373 0.94200 0.98059 1.01869 1.22637 0.97015 0.96808 1.00127 1.22279 0.98492 0.88188 1.03036 0.91430 0.88678 0.88622 0.89899 0.87271 0.90919 0.94050 0.92650 0.94176 0.95275 0.96947 0.75915 0.93364 0.88098 0.88309 0.90180 0.86061 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 9.18 71.23 0.65 -1.25 16 2 C -0.17 -4.14 5.06 -18.71 -0.09 -4.24 16 3 C 0.55 19.06 7.26 86.57 0.63 19.69 16 4 O -0.59 -26.43 15.48 -4.08 -0.06 -26.50 16 5 N -0.59 -19.13 2.91 -819.09 -2.38 -21.51 16 6 C 0.06 1.31 7.48 127.77 0.96 2.27 16 7 C 0.14 5.87 3.17 46.38 0.15 6.02 16 8 H 0.07 3.53 7.03 -2.39 -0.02 3.51 16 9 C 0.14 5.77 6.79 86.85 0.59 6.36 16 10 N -0.62 -32.58 3.39 -691.99 -2.35 -34.93 16 11 C -0.25 -14.04 10.27 84.03 0.86 -13.18 16 12 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 13 C -0.06 -3.54 5.48 84.86 0.47 -3.07 16 14 N -0.95 -57.02 10.35 21.65 0.22 -56.79 16 15 Si 0.98 45.76 29.56 68.60 2.03 47.78 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C 0.17 8.33 5.15 86.73 0.45 8.78 16 20 C 0.08 3.33 3.91 31.78 0.12 3.45 16 21 H 0.09 2.94 6.35 -2.39 -0.02 2.92 16 22 O -0.57 -22.56 13.39 -148.98 -1.99 -24.55 16 23 C -0.09 -2.03 6.55 -17.17 -0.11 -2.14 16 24 C -0.13 -2.91 7.56 30.06 0.23 -2.68 16 25 C -0.13 -1.90 8.17 30.95 0.25 -1.65 16 26 C -0.08 -1.04 7.66 30.17 0.23 -0.81 16 27 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.09 0.96 7.83 -2.39 -0.02 0.94 16 29 H 0.10 1.33 3.81 -2.39 -0.01 1.32 16 30 H 0.08 1.46 6.99 -2.39 -0.02 1.45 16 31 H 0.11 1.73 5.53 -2.39 -0.01 1.71 16 32 H 0.07 1.55 6.38 -2.38 -0.02 1.53 16 33 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 2.06 6.86 -2.38 -0.02 2.04 16 35 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.03 1.57 7.37 -2.39 -0.02 1.55 16 37 H 0.01 0.72 7.45 -2.39 -0.02 0.70 16 38 H 0.39 11.74 9.12 -74.06 -0.68 11.07 16 39 H 0.05 1.45 7.61 -2.39 -0.02 1.43 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -79.04 345.55 1.18 -77.86 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.34 Total: 21.10 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 5.38 Total: 17.54 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -4.51 Total: -113.24 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -2.06 Total: -51.05 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -79.04 1.18 -77.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047378960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.070 kcal (2) G-P(sol) polarization free energy of solvation -79.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds