Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 C 1.50698 * 115.55117 * 295.02848 * 3 2 1 5 5 O 1.21285 * 120.00097 * 113.65843 * 4 3 2 6 6 N 1.34778 * 120.00350 * 293.66006 * 4 3 2 7 7 C 1.47114 * 121.05034 * 354.85344 * 6 4 3 8 8 C 1.53232 * 108.73038 * 232.23662 * 7 6 4 9 9 O 1.43104 * 109.34053 * 305.87644 * 8 7 6 10 10 C 1.42492 * 113.97402 * 59.96538 * 9 8 7 11 11 C 1.53458 * 113.76235 * 73.17866 * 10 9 8 12 12 N 1.47676 * 86.09783 * 91.22868 * 11 10 9 13 13 C 1.36933 * 134.45610 * 204.31558 * 12 11 10 14 14 H 1.08000 * 120.00265 * 6.67154 * 13 12 11 15 15 C 1.38815 * 120.00141 * 186.67237 * 13 12 11 16 16 N 1.31616 * 119.99812 * 6.49098 * 15 13 12 17 17 Si 1.86798 * 120.00120 * 186.49531 * 15 13 12 18 18 H 1.48502 * 109.46760 * 94.98185 * 17 15 13 19 19 H 1.48497 * 109.47386 * 214.98231 * 17 15 13 20 20 H 1.48496 * 109.47251 * 334.98652 * 17 15 13 21 21 C 1.48035 * 90.94165 * 24.28737 * 12 11 10 22 22 C 1.47339 * 121.05095 * 174.87231 * 6 4 3 23 23 C 1.53000 * 117.50134 * 80.70453 * 3 2 1 24 24 C 1.53004 * 117.49567 * 149.36283 * 3 2 1 25 25 H 1.09009 * 109.46990 * 56.09264 * 1 2 3 26 26 H 1.08997 * 109.47106 * 176.09297 * 1 2 3 27 27 H 1.09004 * 109.47061 * 296.09508 * 1 2 3 28 28 H 1.09005 * 109.47026 * 240.00212 * 2 1 3 29 29 H 1.09000 * 109.47194 * 119.99924 * 2 1 3 30 30 H 1.09008 * 109.59674 * 112.46544 * 7 6 4 31 31 H 1.09002 * 109.72451 * 352.08551 * 7 6 4 32 32 H 1.09004 * 109.49229 * 185.91472 * 8 7 6 33 33 H 1.09001 * 109.49099 * 65.83261 * 8 7 6 34 34 H 1.08998 * 113.79621 * 205.55265 * 11 10 9 35 35 H 1.09005 * 113.79022 * 336.90885 * 11 10 9 36 36 H 0.97004 * 120.00361 * 180.02562 * 16 15 13 37 37 H 1.09001 * 113.78913 * 221.44104 * 21 12 11 38 38 H 1.09005 * 113.89869 * 89.98351 * 21 12 11 39 39 H 1.08996 * 109.75050 * 11.95641 * 22 6 4 40 40 H 1.08998 * 109.75031 * 251.23019 * 22 6 4 41 41 H 1.08994 * 117.49938 * 215.00576 * 23 3 2 42 42 H 1.09003 * 117.49355 * 0.02562 * 23 3 2 43 43 H 1.08999 * 117.50069 * 359.97438 * 24 3 2 44 44 H 1.09000 * 117.49595 * 144.99598 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7144 2.2470 -1.2319 5 8 0.9607 3.1943 -1.1559 6 7 2.2606 1.9140 -2.4182 7 6 3.2628 0.8417 -2.5179 8 6 4.4906 1.3829 -3.2578 9 8 4.0818 1.9368 -4.5124 10 6 3.1511 3.0094 -4.3960 11 6 3.7737 4.3157 -3.8852 12 7 3.9961 4.6476 -5.3069 13 6 4.8727 5.4589 -5.9765 14 1 5.6760 5.9439 -5.4417 15 6 4.7289 5.6582 -7.3427 16 7 3.6795 5.1729 -7.9716 17 14 6.0248 6.6149 -8.2886 18 1 6.9997 5.6684 -8.8876 19 1 5.3717 7.4008 -9.3660 20 1 6.7333 7.5359 -7.3639 21 6 2.8916 3.7502 -5.7144 22 6 1.8731 2.6128 -3.6562 23 6 2.0689 2.1817 1.3393 24 6 3.3765 1.7192 0.6916 25 1 -0.3633 0.5733 -0.8530 26 1 -0.3633 -1.0252 -0.0700 27 1 -0.3633 0.4520 0.9229 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8443 0.0004 -3.0706 31 1 3.5525 0.5150 -1.5191 32 1 5.1975 0.5715 -3.4314 33 1 4.9658 2.1574 -2.6559 34 1 3.0641 4.9751 -3.3854 35 1 4.6934 4.1720 -3.3180 36 1 3.5791 5.3118 -8.9264 37 1 3.1114 3.1576 -6.6024 38 1 1.9187 4.2398 -5.7596 39 1 1.2977 3.5053 -3.4107 40 1 1.2761 1.9495 -4.2820 41 1 1.8521 3.2498 1.3294 42 1 1.7249 1.6401 2.2205 43 1 3.8921 0.8738 1.1470 44 1 4.0201 2.4832 0.2556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053412318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = 12.167613 kcal Electronic energy + Delta-G solvation = -25152.423653 eV Core-core repulsion = 21687.057930 eV Total energy + Delta-G solvation = -3465.365723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73749 -39.21407 -36.94054 -36.21548 -34.45028 -32.23509 -32.13352 -30.06562 -28.03467 -26.46412 -25.09782 -24.45011 -23.41329 -22.76545 -22.53607 -21.13660 -18.88941 -18.64426 -16.84166 -16.75812 -16.27480 -15.87249 -15.64493 -15.06815 -14.70417 -14.48017 -14.29106 -14.18247 -13.92825 -13.46574 -13.33416 -13.14412 -12.72468 -12.52083 -12.26778 -11.92447 -11.86869 -11.70965 -11.42727 -11.36970 -11.15427 -10.84515 -10.79558 -10.73640 -10.61333 -10.30547 -10.12502 -9.94745 -9.66034 -9.51293 -9.26236 -8.76983 -8.27434 -6.86065 -5.75405 -3.05399 2.58537 2.88284 3.42427 3.46781 3.48550 3.49085 4.05910 4.26448 4.40635 4.47346 4.57047 4.68510 4.86526 5.02473 5.08558 5.10614 5.17778 5.19697 5.21009 5.34479 5.38329 5.41505 5.54280 5.63831 5.66145 5.71116 5.76713 5.77319 5.83084 5.88283 5.91682 6.03725 6.07518 6.32612 6.39801 6.53084 6.61565 6.97609 7.15083 7.42892 7.50519 7.80877 7.99029 8.20870 9.06019 9.72985 10.60763 11.43604 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031635 B = 0.003826 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.878776 B = 7315.847160 C = 7342.147673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.157 4.157 4 C 0.553 3.447 5 O -0.537 6.537 6 N -0.605 5.605 7 C 0.074 3.926 8 C 0.045 3.955 9 O -0.337 6.337 10 C 0.052 3.948 11 C 0.102 3.898 12 N -0.601 5.601 13 C -0.221 4.221 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.189 3.811 22 C 0.098 3.902 23 C -0.143 4.143 24 C -0.163 4.163 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.254 0.746 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -13.697 17.234 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.160 4.160 4 C 0.341 3.659 5 O -0.413 6.413 6 N -0.339 5.339 7 C -0.050 4.050 8 C -0.033 4.033 9 O -0.254 6.254 10 C 0.011 3.989 11 C -0.024 4.024 12 N -0.327 5.327 13 C -0.348 4.348 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.568 5.568 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C 0.063 3.937 22 C -0.025 4.025 23 C -0.180 4.180 24 C -0.200 4.200 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.107 -13.067 16.793 21.503 hybrid contribution 0.594 0.610 -0.334 0.915 sum -2.513 -12.457 16.458 20.794 Atomic orbital electron populations 1.21719 0.94976 1.01531 1.02521 1.21100 0.96588 0.91489 1.02707 1.21470 1.03784 0.97503 0.93210 1.19477 0.79843 0.83512 0.83099 1.90695 1.36768 1.28666 1.85177 1.48116 1.41724 1.36684 1.07350 1.22483 0.90030 0.90225 1.02216 1.22886 0.94967 0.98356 0.87098 1.88036 1.61789 1.49064 1.26542 1.23742 0.87651 0.86856 1.00692 1.23027 0.97312 0.92516 0.89583 1.45899 1.35759 1.51547 0.99523 1.18987 1.04228 1.21064 0.90550 0.90276 1.24783 0.97890 1.00885 0.96692 1.69813 1.27981 1.50127 1.08841 0.86095 0.80695 0.79234 0.79695 1.21554 1.21705 1.20642 1.22139 0.91558 0.87868 0.92148 1.22306 0.97778 0.98448 0.83952 1.22989 0.99719 1.01404 0.93905 1.23157 0.90172 1.03834 1.02866 0.92578 0.92462 0.92408 0.90974 0.90927 0.90709 0.88819 0.88100 0.92878 0.94207 0.93925 0.93590 0.90857 0.93288 0.88008 0.90835 0.87868 0.88022 0.87778 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.83 37.16 0.37 -0.97 16 2 C -0.08 -0.67 5.48 -26.73 -0.15 -0.81 16 3 C -0.16 -1.63 0.76 -155.66 -0.12 -1.75 16 4 C 0.55 8.05 6.27 -10.99 -0.07 7.98 16 5 O -0.54 -9.88 16.21 5.55 0.09 -9.79 16 6 N -0.61 -8.61 3.03 -172.43 -0.52 -9.13 16 7 C 0.07 0.83 5.41 -3.59 -0.02 0.81 16 8 C 0.04 0.61 6.88 37.28 0.26 0.86 16 9 O -0.34 -6.41 10.52 -35.23 -0.37 -6.78 16 10 C 0.05 1.03 1.21 -90.29 -0.11 0.92 16 11 C 0.10 2.24 8.07 -3.17 -0.03 2.21 16 12 N -0.60 -16.03 3.70 -179.10 -0.66 -16.70 16 13 C -0.22 -6.40 10.69 -15.06 -0.16 -6.56 16 14 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 15 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 16 N -0.92 -27.78 11.75 55.49 0.65 -27.13 16 17 Si 0.91 22.61 29.56 -169.99 -5.02 17.58 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.19 4.55 6.73 -2.98 -0.02 4.53 16 22 C 0.10 1.64 5.80 -3.63 -0.02 1.61 16 23 C -0.14 -1.36 9.78 -26.69 -0.26 -1.62 16 24 C -0.16 -1.41 9.01 -26.69 -0.24 -1.65 16 25 H 0.06 0.62 7.59 -51.92 -0.39 0.23 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.56 6.45 -51.93 -0.34 0.23 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.09 0.82 5.01 -51.93 -0.26 0.56 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.75 7.19 -51.93 -0.37 0.37 16 34 H 0.04 0.88 7.94 -51.93 -0.41 0.47 16 35 H 0.04 0.91 7.27 -51.93 -0.38 0.53 16 36 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 1.94 7.68 -51.93 -0.40 1.55 16 38 H 0.05 1.18 8.09 -51.93 -0.42 0.76 16 39 H 0.10 1.84 6.89 -51.93 -0.36 1.48 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.16 8.01 -51.93 -0.42 0.74 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -34.16 348.98 -8.34 -42.50 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.09 Total: -1.13 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.67 Total: 5.31 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.53 Total: -52.96 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.28 Total: -16.57 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.16 -8.34 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053412318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.665 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds