Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 C 1.50698 * 115.55117 * 295.02848 * 3 2 1 5 5 O 1.21285 * 120.00097 * 113.65843 * 4 3 2 6 6 N 1.34778 * 120.00350 * 293.66006 * 4 3 2 7 7 C 1.47114 * 121.05034 * 354.85344 * 6 4 3 8 8 C 1.53232 * 108.73038 * 232.23662 * 7 6 4 9 9 O 1.43104 * 109.34053 * 305.87644 * 8 7 6 10 10 C 1.42492 * 113.97402 * 59.96538 * 9 8 7 11 11 C 1.53458 * 113.76235 * 73.17866 * 10 9 8 12 12 N 1.47676 * 86.09783 * 91.22868 * 11 10 9 13 13 C 1.36933 * 134.45610 * 204.31558 * 12 11 10 14 14 H 1.08000 * 120.00265 * 6.67154 * 13 12 11 15 15 C 1.38815 * 120.00141 * 186.67237 * 13 12 11 16 16 N 1.31616 * 119.99812 * 6.49098 * 15 13 12 17 17 Si 1.86798 * 120.00120 * 186.49531 * 15 13 12 18 18 H 1.48502 * 109.46760 * 94.98185 * 17 15 13 19 19 H 1.48497 * 109.47386 * 214.98231 * 17 15 13 20 20 H 1.48496 * 109.47251 * 334.98652 * 17 15 13 21 21 C 1.48035 * 90.94165 * 24.28737 * 12 11 10 22 22 C 1.47339 * 121.05095 * 174.87231 * 6 4 3 23 23 C 1.53000 * 117.50134 * 80.70453 * 3 2 1 24 24 C 1.53004 * 117.49567 * 149.36283 * 3 2 1 25 25 H 1.09009 * 109.46990 * 56.09264 * 1 2 3 26 26 H 1.08997 * 109.47106 * 176.09297 * 1 2 3 27 27 H 1.09004 * 109.47061 * 296.09508 * 1 2 3 28 28 H 1.09005 * 109.47026 * 240.00212 * 2 1 3 29 29 H 1.09000 * 109.47194 * 119.99924 * 2 1 3 30 30 H 1.09008 * 109.59674 * 112.46544 * 7 6 4 31 31 H 1.09002 * 109.72451 * 352.08551 * 7 6 4 32 32 H 1.09004 * 109.49229 * 185.91472 * 8 7 6 33 33 H 1.09001 * 109.49099 * 65.83261 * 8 7 6 34 34 H 1.08998 * 113.79621 * 205.55265 * 11 10 9 35 35 H 1.09005 * 113.79022 * 336.90885 * 11 10 9 36 36 H 0.97004 * 120.00361 * 180.02562 * 16 15 13 37 37 H 1.09001 * 113.78913 * 221.44104 * 21 12 11 38 38 H 1.09005 * 113.89869 * 89.98351 * 21 12 11 39 39 H 1.08996 * 109.75050 * 11.95641 * 22 6 4 40 40 H 1.08998 * 109.75031 * 251.23019 * 22 6 4 41 41 H 1.08994 * 117.49938 * 215.00576 * 23 3 2 42 42 H 1.09003 * 117.49355 * 0.02562 * 23 3 2 43 43 H 1.08999 * 117.50069 * 359.97438 * 24 3 2 44 44 H 1.09000 * 117.49595 * 144.99598 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7144 2.2470 -1.2319 5 8 0.9607 3.1943 -1.1559 6 7 2.2606 1.9140 -2.4182 7 6 3.2628 0.8417 -2.5179 8 6 4.4906 1.3829 -3.2578 9 8 4.0818 1.9368 -4.5124 10 6 3.1511 3.0094 -4.3960 11 6 3.7737 4.3157 -3.8852 12 7 3.9961 4.6476 -5.3069 13 6 4.8727 5.4589 -5.9765 14 1 5.6760 5.9439 -5.4417 15 6 4.7289 5.6582 -7.3427 16 7 3.6795 5.1729 -7.9716 17 14 6.0248 6.6149 -8.2886 18 1 6.9997 5.6684 -8.8876 19 1 5.3717 7.4008 -9.3660 20 1 6.7333 7.5359 -7.3639 21 6 2.8916 3.7502 -5.7144 22 6 1.8731 2.6128 -3.6562 23 6 2.0689 2.1817 1.3393 24 6 3.3765 1.7192 0.6916 25 1 -0.3633 0.5733 -0.8530 26 1 -0.3633 -1.0252 -0.0700 27 1 -0.3633 0.4520 0.9229 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8443 0.0004 -3.0706 31 1 3.5525 0.5150 -1.5191 32 1 5.1975 0.5715 -3.4314 33 1 4.9658 2.1574 -2.6559 34 1 3.0641 4.9751 -3.3854 35 1 4.6934 4.1720 -3.3180 36 1 3.5791 5.3118 -8.9264 37 1 3.1114 3.1576 -6.6024 38 1 1.9187 4.2398 -5.7596 39 1 1.2977 3.5053 -3.4107 40 1 1.2761 1.9495 -4.2820 41 1 1.8521 3.2498 1.3294 42 1 1.7249 1.6401 2.2205 43 1 3.8921 0.8738 1.1470 44 1 4.0201 2.4832 0.2556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053412318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = -11.036490 kcal Electronic energy + Delta-G solvation = -25153.429858 eV Core-core repulsion = 21687.057930 eV Total energy + Delta-G solvation = -3466.371928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94964 -40.58033 -37.93215 -37.75824 -35.76321 -34.29311 -32.79669 -31.57477 -29.46424 -28.16708 -26.94174 -25.41632 -24.60465 -24.07325 -23.33461 -22.50270 -20.42572 -19.68842 -18.83568 -17.81552 -17.63548 -17.08608 -17.03438 -16.56115 -16.09486 -15.78809 -15.59341 -15.39006 -15.01154 -14.84799 -14.66485 -14.33402 -14.08923 -13.86200 -13.52507 -13.32922 -13.05806 -12.87197 -12.79670 -12.61466 -12.48787 -12.38977 -12.09867 -12.07360 -11.92700 -11.75144 -11.50043 -11.33088 -11.01749 -10.94519 -10.80338 -10.64846 -9.57118 -8.99208 -7.96128 -5.28899 1.43275 1.46325 1.50294 1.55019 1.78300 2.43741 2.65164 2.73101 3.20067 3.28197 3.37383 3.52870 3.66715 3.78065 3.86914 3.94558 4.05007 4.13110 4.27799 4.37974 4.45892 4.49951 4.56691 4.60048 4.65070 4.67185 4.69533 4.75649 4.84708 4.92169 4.98348 5.04878 5.08805 5.09006 5.13528 5.20622 5.22972 5.32220 5.39228 5.40568 5.84000 6.30857 6.36390 6.85137 7.08442 7.53914 8.48357 9.22613 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031635 B = 0.003826 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.878776 B = 7315.847160 C = 7342.147673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.165 4.165 4 C 0.547 3.453 5 O -0.586 6.586 6 N -0.606 5.606 7 C 0.078 3.922 8 C 0.036 3.964 9 O -0.364 6.364 10 C 0.087 3.913 11 C 0.104 3.896 12 N -0.630 5.630 13 C -0.241 4.241 14 H 0.081 0.919 15 C -0.062 4.062 16 N -0.952 5.952 17 Si 0.983 3.017 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.184 3.816 22 C 0.107 3.893 23 C -0.149 4.149 24 C -0.143 4.143 25 H 0.024 0.976 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.251 0.749 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.142 0.858 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -16.144 19.381 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.168 4.168 4 C 0.337 3.663 5 O -0.466 6.466 6 N -0.338 5.338 7 C -0.044 4.044 8 C -0.040 4.040 9 O -0.282 6.282 10 C 0.045 3.955 11 C -0.022 4.022 12 N -0.356 5.356 13 C -0.369 4.369 14 H 0.099 0.901 15 C -0.256 4.256 16 N -0.601 5.601 17 Si 0.811 3.189 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.193 1.193 21 C 0.058 3.942 22 C -0.017 4.017 23 C -0.186 4.186 24 C -0.180 4.180 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.146 0.854 43 H 0.160 0.840 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.607 -15.548 18.983 24.590 hybrid contribution 0.135 1.370 -0.943 1.669 sum -1.472 -14.179 18.039 22.992 Atomic orbital electron populations 1.21729 0.96023 1.02025 1.01053 1.21167 0.95619 0.89832 1.04693 1.21485 1.05852 0.98273 0.91197 1.20322 0.78763 0.83090 0.84127 1.90669 1.38945 1.31030 1.85958 1.48205 1.42293 1.36976 1.06358 1.22692 0.88176 0.89375 1.04167 1.23284 0.96631 0.99018 0.85093 1.87981 1.61716 1.48442 1.30069 1.23062 0.88830 0.86425 0.97225 1.23098 0.97665 0.93767 0.87628 1.46267 1.36049 1.51603 1.01707 1.19382 1.04911 1.21298 0.91317 0.90122 1.25678 1.00094 1.02244 0.97548 1.69998 1.29805 1.51489 1.08764 0.85003 0.77986 0.77890 0.78067 1.21090 1.21771 1.19252 1.22030 0.90542 0.88183 0.93452 1.21948 0.95879 0.98523 0.85337 1.23059 1.00854 1.00231 0.94464 1.23289 0.89197 1.04361 1.01180 0.95713 0.90689 0.92532 0.90063 0.87705 0.88862 0.85316 0.84679 0.93434 0.94624 0.93172 0.93981 0.93944 0.94275 0.89969 0.89479 0.90604 0.85364 0.84046 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.83 71.98 0.71 -1.63 16 2 C -0.08 -0.93 5.48 30.60 0.17 -0.76 16 3 C -0.17 -2.98 0.76 -52.93 -0.04 -3.02 16 4 C 0.55 15.51 6.27 87.66 0.55 16.06 16 5 O -0.59 -22.24 16.21 -3.04 -0.05 -22.28 16 6 N -0.61 -16.47 3.03 -817.84 -2.48 -18.95 16 7 C 0.08 1.49 5.41 86.34 0.47 1.95 16 8 C 0.04 0.89 6.88 72.06 0.50 1.38 16 9 O -0.36 -13.60 10.52 -148.98 -1.57 -15.16 16 10 C 0.09 3.47 1.21 -10.50 -0.01 3.45 16 11 C 0.10 4.68 8.07 86.30 0.70 5.37 16 12 N -0.63 -34.75 3.70 -724.95 -2.69 -37.44 16 13 C -0.24 -14.32 10.69 84.03 0.90 -13.42 16 14 H 0.08 4.61 7.84 -2.91 -0.02 4.58 16 15 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 16 N -0.95 -59.38 11.75 21.65 0.25 -59.12 16 17 Si 0.98 47.18 29.56 68.60 2.03 49.21 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C 0.18 9.31 6.73 86.23 0.58 9.89 16 22 C 0.11 3.62 5.80 86.19 0.50 4.12 16 23 C -0.15 -2.49 9.78 30.62 0.30 -2.19 16 24 C -0.14 -1.92 9.01 30.62 0.28 -1.65 16 25 H 0.02 0.52 7.59 -2.38 -0.02 0.51 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.08 0.86 6.45 -2.38 -0.02 0.85 16 29 H 0.10 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.13 1.60 5.01 -2.39 -0.01 1.59 16 32 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.05 1.22 7.19 -2.39 -0.02 1.21 16 34 H 0.04 1.65 7.94 -2.39 -0.02 1.63 16 35 H 0.05 2.16 7.27 -2.38 -0.02 2.14 16 36 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 37 H 0.04 2.38 7.68 -2.39 -0.02 2.36 16 38 H 0.04 2.03 8.09 -2.38 -0.02 2.01 16 39 H 0.08 3.12 6.89 -2.39 -0.02 3.10 16 40 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.08 1.70 8.01 -2.39 -0.02 1.68 16 42 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.59 348.98 2.54 -76.06 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.98 Total: 11.34 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.05 Total: 16.35 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -4.91 Total: -115.51 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.62 Total: -37.45 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -78.59 2.54 -76.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053412318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.020 kcal (2) G-P(sol) polarization free energy of solvation -78.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds