Wall clock time and date at job start Tue Mar 31 2020 07:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47207 * 2 1 4 4 H 1.08999 * 115.56172 * 29.30887 * 3 2 1 5 5 C 1.53001 * 117.49489 * 243.62205 * 3 2 1 6 6 C 1.52993 * 117.49837 * 174.99724 * 3 2 1 7 7 H 1.08999 * 117.50004 * 359.97438 * 6 3 2 8 8 C 1.50700 * 117.49879 * 214.97710 * 6 3 2 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 6 3 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 6 3 11 11 C 1.46494 * 119.99635 * 180.02562 * 10 8 6 12 12 H 1.08998 * 110.73947 * 36.96033 * 11 10 8 13 13 C 1.54473 * 110.82673 * 273.54533 * 11 10 8 14 14 O 1.43524 * 107.57585 * 220.41442 * 13 11 10 15 15 C 1.42549 * 109.63802 * 359.36726 * 14 13 11 16 16 C 1.52954 * 116.15729 * 253.32719 * 15 14 13 17 17 N 1.47764 * 85.80189 * 218.94980 * 16 15 14 18 18 C 1.36939 * 134.40954 * 203.94517 * 17 16 15 19 19 H 1.08000 * 120.00685 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99650 * 359.96308 * 18 17 16 21 21 N 1.31618 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47113 * 90.00450 * 22 20 18 24 24 H 1.48501 * 109.47421 * 210.00260 * 22 20 18 25 25 H 1.48499 * 109.47478 * 330.00456 * 22 20 18 26 26 C 1.47771 * 91.18923 * 23.91835 * 17 16 15 27 27 C 1.54000 * 106.48721 * 23.03482 * 15 14 13 28 28 H 1.09007 * 109.46943 * 60.00254 * 1 2 3 29 29 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47047 * 300.00439 * 1 2 3 31 31 H 1.09002 * 109.47481 * 240.00114 * 2 1 3 32 32 H 1.08998 * 109.47116 * 119.99722 * 2 1 3 33 33 H 1.09000 * 117.49307 * 145.02436 * 5 3 2 34 34 H 1.08993 * 117.50144 * 359.97438 * 5 3 2 35 35 H 0.96995 * 120.00015 * 359.72695 * 10 8 6 36 36 H 1.08997 * 109.82804 * 339.92636 * 13 11 10 37 37 H 1.08997 * 109.83082 * 100.90963 * 13 11 10 38 38 H 1.09001 * 113.82066 * 333.16762 * 16 15 14 39 39 H 1.08998 * 113.81487 * 104.72761 * 16 15 14 40 40 H 0.97001 * 120.00342 * 180.02562 * 21 20 18 41 41 H 1.08999 * 113.82524 * 221.86047 * 26 17 16 42 42 H 1.09006 * 113.81799 * 90.29919 * 26 17 16 43 43 H 1.08995 * 111.15618 * 206.95666 * 27 15 14 44 44 H 1.09003 * 111.15257 * 82.72057 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1718 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7720 0.1966 8 6 4.0228 2.8620 0.8914 9 8 3.2158 3.6165 1.3918 10 7 5.3424 3.1005 1.0268 11 6 5.8018 4.2708 1.7788 12 1 5.1570 4.4549 2.6381 13 6 5.8717 5.5163 0.8678 14 8 7.0628 6.2390 1.2123 15 6 7.7421 5.5667 2.2700 16 6 7.6636 6.2258 3.6480 17 7 9.0750 5.8168 3.8039 18 6 9.8896 5.5749 4.8777 19 1 10.9162 5.2786 4.7209 20 6 9.3958 5.7109 6.1679 21 7 8.1446 6.0717 6.3591 22 14 10.5072 5.3816 7.6328 23 1 11.1906 6.6394 8.0282 24 1 9.6928 4.8824 8.7698 25 1 11.5218 4.3615 7.2651 26 6 9.2561 5.7724 2.3380 27 6 7.2826 4.0977 2.2203 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7213 2.9427 -1.5343 34 1 3.0099 1.1857 -2.0155 35 1 5.9879 2.4950 0.6300 36 1 5.9151 5.2083 -0.1769 37 1 4.9968 6.1450 1.0333 38 1 7.5197 7.3056 3.6120 39 1 6.9820 5.7264 4.3366 40 1 7.7997 6.1671 7.2607 41 1 9.8328 4.9148 1.9914 42 1 9.5920 6.7156 1.9072 43 1 7.3480 3.6316 3.2034 44 1 7.8501 3.5328 1.4808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053932750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:48 Heat of formation + Delta-G solvation = -5.638899 kcal Electronic energy + Delta-G solvation = -23703.429420 eV Core-core repulsion = 20237.291549 eV Total energy + Delta-G solvation = -3466.137871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43882 -39.52103 -37.34856 -36.17279 -34.48176 -32.36970 -32.08983 -30.28311 -28.13448 -25.81992 -24.98845 -24.81979 -23.97179 -22.04116 -21.37196 -20.70101 -20.21202 -18.72707 -17.52970 -16.79702 -16.45792 -15.51062 -15.24823 -15.14712 -14.97117 -14.70328 -14.54940 -14.27501 -13.73694 -13.52105 -12.92270 -12.84550 -12.72009 -12.56810 -12.41476 -11.96642 -11.69802 -11.59258 -11.40878 -11.32906 -11.10673 -10.92816 -10.84268 -10.73061 -10.55112 -10.33450 -10.28897 -10.01467 -9.84959 -9.57054 -9.07582 -8.81854 -8.74145 -6.92375 -5.78725 -3.12136 2.39521 2.98043 3.38269 3.42676 3.45199 3.56987 4.20961 4.32864 4.47001 4.48543 4.51029 4.68105 4.86883 4.92593 5.02816 5.12942 5.14383 5.22312 5.23909 5.35043 5.35856 5.41276 5.48654 5.54269 5.61514 5.68461 5.78838 5.84165 5.93215 5.99016 6.08766 6.14536 6.30719 6.36599 6.47671 6.58851 6.69841 7.03089 7.21258 7.43810 7.50057 7.70413 7.94501 8.17097 9.01708 9.67723 10.55511 11.38286 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.003027 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.407214 B = 9246.727244 C = 9937.177655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.119 0.881 5 C -0.149 4.149 6 C -0.191 4.191 7 H 0.123 0.877 8 C 0.541 3.459 9 O -0.537 6.537 10 N -0.714 5.714 11 C 0.112 3.888 12 H 0.106 0.894 13 C 0.047 3.953 14 O -0.369 6.369 15 C 0.056 3.944 16 C 0.157 3.843 17 N -0.605 5.605 18 C -0.223 4.223 19 H 0.082 0.918 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.129 3.871 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.255 0.745 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 -12.087 -15.987 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.137 0.863 5 C -0.186 4.186 6 C -0.212 4.212 7 H 0.141 0.859 8 C 0.328 3.672 9 O -0.414 6.414 10 N -0.365 5.365 11 C 0.007 3.993 12 H 0.124 0.876 13 C -0.032 4.032 14 O -0.287 6.287 15 C 0.015 3.985 16 C 0.031 3.969 17 N -0.334 5.334 18 C -0.350 4.350 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.003 3.997 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.117 0.883 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.142 -11.368 -15.371 22.128 hybrid contribution 0.982 -0.441 0.770 1.324 sum -10.159 -11.810 -14.602 21.351 Atomic orbital electron populations 1.21742 0.95152 1.01627 1.02217 1.21160 0.96326 0.93618 1.02146 1.22490 0.91379 0.98763 1.00997 0.86345 1.23107 1.02045 1.03199 0.90254 1.22304 0.97869 0.98945 1.02116 0.85885 1.19701 0.82270 0.85506 0.79735 1.90715 1.53856 1.48688 1.48117 1.45879 1.06994 1.28001 1.55636 1.22648 0.96766 0.85035 0.94855 0.87641 1.23441 0.88991 0.92752 0.97992 1.88308 1.36302 1.49776 1.54289 1.24185 0.94350 0.90621 0.89313 1.22553 0.87893 0.96882 0.89536 1.45729 1.09332 1.79170 0.99133 1.18966 0.93047 1.39632 0.83345 0.90061 1.24809 0.96637 1.01734 0.97208 1.69822 1.13461 1.52731 1.20541 0.86106 0.79356 0.77858 0.82339 1.21554 1.21609 1.20596 1.22555 0.91539 0.98796 0.86785 1.22958 0.92399 0.97049 1.03472 0.92530 0.92640 0.92410 0.91689 0.91353 0.88245 0.87822 0.76353 0.91833 0.91191 0.94668 0.90595 0.93523 0.93288 0.93865 0.88255 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.87 37.16 0.37 -0.60 16 2 C -0.10 -0.65 6.22 -26.73 -0.17 -0.82 16 3 C -0.12 -1.04 5.25 -90.62 -0.48 -1.51 16 4 H 0.12 1.28 7.60 -51.93 -0.39 0.89 16 5 C -0.15 -1.15 9.88 -26.73 -0.26 -1.41 16 6 C -0.19 -1.75 5.91 -91.77 -0.54 -2.29 16 7 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 8 C 0.54 6.99 7.61 -10.98 -0.08 6.91 16 9 O -0.54 -9.13 15.99 5.56 0.09 -9.04 16 10 N -0.71 -8.51 5.14 -51.79 -0.27 -8.78 16 11 C 0.11 1.69 3.29 -65.84 -0.22 1.48 16 12 H 0.11 1.84 7.71 -51.93 -0.40 1.44 16 13 C 0.05 0.73 7.57 37.93 0.29 1.02 16 14 O -0.37 -6.96 11.17 -35.23 -0.39 -7.36 16 15 C 0.06 1.10 1.47 -90.30 -0.13 0.97 16 16 C 0.16 3.83 6.99 -3.38 -0.02 3.81 16 17 N -0.61 -15.62 3.69 -183.24 -0.68 -16.29 16 18 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.29 11.40 55.49 0.63 -26.66 16 22 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.13 2.73 8.49 -3.38 -0.03 2.70 16 27 C -0.12 -1.98 6.02 -24.89 -0.15 -2.13 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 7.88 -51.93 -0.41 -0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 35 H 0.40 3.61 8.50 -40.82 -0.35 3.26 16 36 H 0.06 0.89 8.02 -51.93 -0.42 0.47 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 2.00 7.16 -51.93 -0.37 1.63 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.10 1.83 8.05 -51.93 -0.42 1.41 16 44 H 0.08 1.07 7.98 -51.93 -0.41 0.65 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -32.76 361.48 -9.24 -42.00 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.36 Total: 2.19 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.69 Total: 1.46 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.31 Total: -51.73 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.30 Total: -16.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.76 -9.24 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053932750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.363 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds