Wall clock time and date at job start Tue Mar 31 2020 07:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47207 * 2 1 4 4 H 1.08999 * 115.56172 * 29.30887 * 3 2 1 5 5 C 1.53001 * 117.49489 * 243.62205 * 3 2 1 6 6 C 1.52993 * 117.49837 * 174.99724 * 3 2 1 7 7 H 1.08999 * 117.50004 * 359.97438 * 6 3 2 8 8 C 1.50700 * 117.49879 * 214.97710 * 6 3 2 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 6 3 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 6 3 11 11 C 1.46494 * 119.99635 * 180.02562 * 10 8 6 12 12 H 1.08998 * 110.73947 * 36.96033 * 11 10 8 13 13 C 1.54473 * 110.82673 * 273.54533 * 11 10 8 14 14 O 1.43524 * 107.57585 * 220.41442 * 13 11 10 15 15 C 1.42549 * 109.63802 * 359.36726 * 14 13 11 16 16 C 1.52954 * 116.15729 * 253.32719 * 15 14 13 17 17 N 1.47764 * 85.80189 * 218.94980 * 16 15 14 18 18 C 1.36939 * 134.40954 * 203.94517 * 17 16 15 19 19 H 1.08000 * 120.00685 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99650 * 359.96308 * 18 17 16 21 21 N 1.31618 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47113 * 90.00450 * 22 20 18 24 24 H 1.48501 * 109.47421 * 210.00260 * 22 20 18 25 25 H 1.48499 * 109.47478 * 330.00456 * 22 20 18 26 26 C 1.47771 * 91.18923 * 23.91835 * 17 16 15 27 27 C 1.54000 * 106.48721 * 23.03482 * 15 14 13 28 28 H 1.09007 * 109.46943 * 60.00254 * 1 2 3 29 29 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47047 * 300.00439 * 1 2 3 31 31 H 1.09002 * 109.47481 * 240.00114 * 2 1 3 32 32 H 1.08998 * 109.47116 * 119.99722 * 2 1 3 33 33 H 1.09000 * 117.49307 * 145.02436 * 5 3 2 34 34 H 1.08993 * 117.50144 * 359.97438 * 5 3 2 35 35 H 0.96995 * 120.00015 * 359.72695 * 10 8 6 36 36 H 1.08997 * 109.82804 * 339.92636 * 13 11 10 37 37 H 1.08997 * 109.83082 * 100.90963 * 13 11 10 38 38 H 1.09001 * 113.82066 * 333.16762 * 16 15 14 39 39 H 1.08998 * 113.81487 * 104.72761 * 16 15 14 40 40 H 0.97001 * 120.00342 * 180.02562 * 21 20 18 41 41 H 1.08999 * 113.82524 * 221.86047 * 26 17 16 42 42 H 1.09006 * 113.81799 * 90.29919 * 26 17 16 43 43 H 1.08995 * 111.15618 * 206.95666 * 27 15 14 44 44 H 1.09003 * 111.15257 * 82.72057 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1718 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7720 0.1966 8 6 4.0228 2.8620 0.8914 9 8 3.2158 3.6165 1.3918 10 7 5.3424 3.1005 1.0268 11 6 5.8018 4.2708 1.7788 12 1 5.1570 4.4549 2.6381 13 6 5.8717 5.5163 0.8678 14 8 7.0628 6.2390 1.2123 15 6 7.7421 5.5667 2.2700 16 6 7.6636 6.2258 3.6480 17 7 9.0750 5.8168 3.8039 18 6 9.8896 5.5749 4.8777 19 1 10.9162 5.2786 4.7209 20 6 9.3958 5.7109 6.1679 21 7 8.1446 6.0717 6.3591 22 14 10.5072 5.3816 7.6328 23 1 11.1906 6.6394 8.0282 24 1 9.6928 4.8824 8.7698 25 1 11.5218 4.3615 7.2651 26 6 9.2561 5.7724 2.3380 27 6 7.2826 4.0977 2.2203 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7213 2.9427 -1.5343 34 1 3.0099 1.1857 -2.0155 35 1 5.9879 2.4950 0.6300 36 1 5.9151 5.2083 -0.1769 37 1 4.9968 6.1450 1.0333 38 1 7.5197 7.3056 3.6120 39 1 6.9820 5.7264 4.3366 40 1 7.7997 6.1671 7.2607 41 1 9.8328 4.9148 1.9914 42 1 9.5920 6.7156 1.9072 43 1 7.3480 3.6316 3.2034 44 1 7.8501 3.5328 1.4808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053932750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:48 Heat of formation + Delta-G solvation = -27.766307 kcal Electronic energy + Delta-G solvation = -23704.388937 eV Core-core repulsion = 20237.291549 eV Total energy + Delta-G solvation = -3467.097388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73159 -40.77461 -38.32929 -37.68154 -35.73713 -34.15585 -32.96352 -31.57957 -29.91287 -27.54985 -26.76312 -25.72532 -24.57853 -23.92138 -22.48163 -21.59185 -21.09223 -20.35516 -18.79098 -18.48036 -17.70926 -17.18920 -16.58529 -16.51347 -16.09161 -15.98022 -15.60119 -15.35193 -15.21857 -14.78333 -14.44722 -14.27085 -13.73573 -13.54197 -13.43541 -13.33509 -12.96209 -12.89756 -12.84720 -12.70793 -12.62702 -12.38435 -12.16693 -12.00839 -11.90887 -11.79087 -11.52234 -11.25292 -11.05259 -10.90576 -10.77255 -10.38369 -10.20674 -9.00109 -7.92913 -5.28669 1.42711 1.45437 1.47980 1.56667 1.96643 2.42554 2.79463 2.87834 3.17391 3.32404 3.48352 3.61665 3.69195 3.74983 3.77371 3.88319 4.00393 4.05413 4.21639 4.30606 4.50632 4.57683 4.61891 4.65492 4.73122 4.79406 4.81074 4.85273 4.90577 4.96607 5.01397 5.02076 5.12228 5.17424 5.18837 5.25062 5.31333 5.38410 5.46688 5.51735 5.84270 6.13053 6.50001 6.86344 7.19691 7.56374 8.49691 9.24104 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.003027 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.407214 B = 9246.727244 C = 9937.177655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.128 4.128 4 H 0.089 0.911 5 C -0.130 4.130 6 C -0.192 4.192 7 H 0.154 0.846 8 C 0.536 3.464 9 O -0.586 6.586 10 N -0.698 5.698 11 C 0.123 3.877 12 H 0.073 0.927 13 C 0.046 3.954 14 O -0.379 6.379 15 C 0.076 3.924 16 C 0.150 3.850 17 N -0.630 5.630 18 C -0.232 4.232 19 H 0.092 0.908 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.983 3.017 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.262 1.262 26 C 0.131 3.869 27 C -0.108 4.108 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.421 0.579 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.007 0.993 39 H 0.046 0.954 40 H 0.248 0.752 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -14.659 -18.393 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.147 4.147 4 H 0.107 0.893 5 C -0.168 4.168 6 C -0.213 4.213 7 H 0.171 0.829 8 C 0.325 3.675 9 O -0.467 6.467 10 N -0.351 5.351 11 C 0.017 3.983 12 H 0.092 0.908 13 C -0.031 4.031 14 O -0.296 6.296 15 C 0.036 3.964 16 C 0.024 3.976 17 N -0.358 5.358 18 C -0.360 4.360 19 H 0.110 0.890 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.811 3.189 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.186 1.186 26 C 0.007 3.993 27 C -0.146 4.146 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.153 0.847 35 H 0.260 0.740 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.911 -13.971 -17.836 24.730 hybrid contribution 0.554 0.434 1.464 1.625 sum -9.357 -13.537 -16.372 23.213 Atomic orbital electron populations 1.21755 0.95210 1.02214 1.01702 1.21156 0.96271 0.92200 1.03062 1.22496 0.90840 0.99474 1.01882 0.89300 1.23216 0.99949 1.03442 0.90164 1.22347 0.98339 0.97990 1.02603 0.82860 1.20443 0.81873 0.86036 0.79157 1.90704 1.55095 1.50661 1.50191 1.45688 1.07364 1.27159 1.54877 1.22235 0.95576 0.86270 0.94220 0.90844 1.23578 0.87515 0.92512 0.99540 1.88290 1.37292 1.50708 1.53345 1.23729 0.93779 0.92105 0.86829 1.22442 0.87359 0.95351 0.92489 1.46043 1.09678 1.79108 1.00975 1.19425 0.93730 1.38532 0.84265 0.88988 1.25715 0.98033 1.02290 1.00134 1.70039 1.15376 1.54471 1.20494 0.85015 0.77647 0.77863 0.78419 1.21554 1.22214 1.18607 1.22693 0.92723 0.99985 0.83944 1.22843 0.93358 0.94794 1.03557 0.92313 0.91453 0.93755 0.89590 0.91495 0.89340 0.84666 0.74044 0.88833 0.92075 0.97475 0.93572 0.94278 0.90233 0.93683 0.90458 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.87 71.98 0.71 -1.04 16 2 C -0.09 -1.03 6.22 30.60 0.19 -0.84 16 3 C -0.13 -2.08 5.25 -10.79 -0.06 -2.14 16 4 H 0.09 1.99 7.60 -2.39 -0.02 1.97 16 5 C -0.13 -1.65 9.88 30.60 0.30 -1.34 16 6 C -0.19 -3.03 5.91 -11.54 -0.07 -3.10 16 7 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 8 C 0.54 13.29 7.61 87.66 0.67 13.95 16 9 O -0.59 -20.45 15.99 -3.03 -0.05 -20.50 16 10 N -0.70 -15.26 5.14 -436.14 -2.24 -17.50 16 11 C 0.12 3.67 3.29 46.35 0.15 3.82 16 12 H 0.07 2.69 7.71 -2.39 -0.02 2.67 16 13 C 0.05 1.41 7.57 72.48 0.55 1.96 16 14 O -0.38 -13.95 11.17 -148.98 -1.66 -15.61 16 15 C 0.08 2.99 1.47 -10.44 -0.02 2.97 16 16 C 0.15 7.63 6.99 86.12 0.60 8.23 16 17 N -0.63 -32.82 3.69 -739.79 -2.73 -35.55 16 18 C -0.23 -12.95 10.70 84.03 0.90 -12.05 16 19 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.96 -58.92 11.40 21.65 0.25 -58.67 16 22 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 25 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 26 C 0.13 5.37 8.49 86.11 0.73 6.10 16 27 C -0.11 -3.37 6.02 31.79 0.19 -3.18 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.65 7.88 -2.39 -0.02 0.63 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.14 0.90 8.03 -2.39 -0.02 0.88 16 35 H 0.42 6.00 8.50 -92.71 -0.79 5.21 16 36 H 0.09 2.33 8.02 -2.39 -0.02 2.31 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.05 2.60 7.16 -2.39 -0.02 2.58 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 42 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.08 2.83 8.05 -2.39 -0.02 2.81 16 44 H 0.12 2.76 7.98 -2.39 -0.02 2.74 16 Total: -1.00 -74.59 361.48 1.11 -73.48 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.20 Total: 16.67 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.32 Total: 9.86 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.72 Total: -111.72 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.71 Total: -36.12 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -74.59 1.11 -73.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053932750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.719 kcal (2) G-P(sol) polarization free energy of solvation -74.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds