Wall clock time and date at job start Tue Mar 31 2020 07:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47337 * 2 1 4 4 H 1.09003 * 115.54670 * 29.33174 * 3 2 1 5 5 C 1.53075 * 117.49604 * 243.60722 * 3 2 1 6 6 C 1.52994 * 117.50115 * 175.00591 * 3 2 1 7 7 H 1.09005 * 117.49809 * 359.97305 * 6 3 2 8 8 C 1.50699 * 117.49648 * 214.98326 * 6 3 2 9 9 O 1.21276 * 120.00350 * 0.08224 * 8 6 3 10 10 N 1.34782 * 119.99856 * 180.08455 * 8 6 3 11 11 C 1.46500 * 120.00153 * 179.97438 * 10 8 6 12 12 H 1.08998 * 110.97449 * 329.15841 * 11 10 8 13 13 C 1.55007 * 111.14642 * 93.33922 * 11 10 8 14 14 O 1.43871 * 105.17319 * 154.05275 * 13 11 10 15 15 C 1.42525 * 109.62188 * 335.68983 * 14 13 11 16 16 C 1.53259 * 115.54447 * 231.51348 * 15 14 13 17 17 N 1.47712 * 85.91544 * 219.84230 * 16 15 14 18 18 C 1.36944 * 134.43851 * 204.13526 * 17 16 15 19 19 H 1.07999 * 120.00176 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00071 * 0.03064 * 18 17 16 21 21 N 1.31625 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00329 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46895 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47579 * 119.99659 * 22 20 18 25 25 H 1.48500 * 109.47101 * 240.00029 * 22 20 18 26 26 C 1.47710 * 91.12576 * 24.15621 * 17 16 15 27 27 C 1.53769 * 108.38244 * 1.87130 * 15 14 13 28 28 H 1.09001 * 109.46732 * 299.99653 * 1 2 3 29 29 H 1.08995 * 109.47258 * 59.99499 * 1 2 3 30 30 H 1.08998 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46732 * 240.00347 * 2 1 3 32 32 H 1.08995 * 109.47258 * 120.00501 * 2 1 3 33 33 H 1.09004 * 117.51165 * 145.03266 * 5 3 2 34 34 H 1.08995 * 117.49532 * 0.02562 * 5 3 2 35 35 H 0.97000 * 119.99794 * 359.97438 * 10 8 6 36 36 H 1.09003 * 110.30204 * 35.12434 * 13 11 10 37 37 H 1.08998 * 110.30276 * 272.98080 * 13 11 10 38 38 H 1.09006 * 113.80649 * 334.08997 * 16 15 14 39 39 H 1.08999 * 113.80153 * 105.59331 * 16 15 14 40 40 H 0.97004 * 119.99766 * 179.97438 * 21 20 18 41 41 H 1.08995 * 113.80092 * 221.59946 * 26 17 16 42 42 H 1.08995 * 113.90504 * 90.10632 * 26 17 16 43 43 H 1.08996 * 110.92090 * 139.14470 * 27 15 14 44 44 H 1.09004 * 110.91868 * 262.74403 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4818 5 6 2.8448 1.9076 -1.2163 6 6 3.5502 1.6579 0.1181 7 1 4.1803 0.7719 0.1963 8 6 4.0229 2.8619 0.8913 9 8 3.2159 3.6157 1.3928 10 7 5.3425 3.1011 1.0255 11 6 5.8021 4.2719 1.7767 12 1 5.0880 5.0915 1.6971 13 6 6.0765 3.9126 3.2594 14 8 7.0530 4.8708 3.7045 15 6 7.7845 5.3639 2.5851 16 6 9.3105 5.2999 2.7126 17 7 9.3152 6.6235 2.0570 18 6 10.2316 7.3251 1.3199 19 1 9.9835 8.3059 0.9419 20 6 11.4792 6.7757 1.0586 21 7 11.7817 5.5806 1.5198 22 14 12.7295 7.7330 0.0539 23 1 12.1485 9.0406 -0.3434 24 1 13.9501 7.9603 0.8687 25 1 13.0837 6.9590 -1.1630 26 6 7.9360 6.8877 2.5151 27 6 7.2175 4.7154 1.3114 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.7225 2.9428 -1.5350 34 1 3.0101 1.1859 -2.0162 35 1 5.9879 2.4980 0.6247 36 1 6.4765 2.9015 3.3357 37 1 5.1624 4.0037 3.8460 38 1 9.6671 5.3178 3.7426 39 1 9.7691 4.5116 2.1156 40 1 12.6534 5.1965 1.3369 41 1 7.3047 7.3583 1.7615 42 1 7.8797 7.3804 3.4857 43 1 7.1512 5.4416 0.5013 44 1 7.8169 3.8554 1.0126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053932752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:52 Heat of formation + Delta-G solvation = -6.870469 kcal Electronic energy + Delta-G solvation = -23600.375160 eV Core-core repulsion = 20134.183884 eV Total energy + Delta-G solvation = -3466.191276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44054 -39.52457 -37.37041 -36.19663 -34.50823 -32.39459 -32.09574 -30.31621 -28.13979 -25.70182 -24.95195 -24.90765 -24.00818 -21.99423 -21.40914 -20.77090 -20.26280 -18.77045 -17.57166 -16.80211 -16.49454 -15.56493 -15.25400 -15.02390 -14.93976 -14.85636 -14.46050 -14.38864 -13.73300 -13.39989 -13.04710 -12.84485 -12.77968 -12.55028 -12.42590 -12.18899 -11.68040 -11.60795 -11.39741 -11.35535 -11.10410 -10.91172 -10.77653 -10.71161 -10.58844 -10.40067 -10.30820 -10.04211 -9.89416 -9.59117 -9.12920 -8.82680 -8.70318 -6.92513 -5.80513 -3.12959 2.35082 2.93226 3.36779 3.42347 3.44892 3.54833 4.18626 4.31039 4.45627 4.47785 4.52728 4.67932 4.84846 4.92335 5.00225 5.05070 5.10944 5.13643 5.27754 5.33946 5.35490 5.36590 5.47216 5.53014 5.59664 5.66499 5.76010 5.81615 5.88469 5.93078 6.06258 6.17014 6.25876 6.35948 6.48017 6.59299 6.68559 7.02536 7.20278 7.40328 7.48902 7.69498 7.93566 8.12019 9.01135 9.66778 10.55377 11.36996 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.002844 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.302697 B = 9842.327588 C =10353.084366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.191 4.191 7 H 0.124 0.876 8 C 0.543 3.457 9 O -0.541 6.541 10 N -0.712 5.712 11 C 0.107 3.893 12 H 0.106 0.894 13 C 0.044 3.956 14 O -0.365 6.365 15 C 0.055 3.945 16 C 0.165 3.835 17 N -0.605 5.605 18 C -0.219 4.219 19 H 0.082 0.918 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.117 3.883 27 C -0.117 4.117 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.404 0.596 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 -12.328 -4.158 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.213 4.213 7 H 0.142 0.858 8 C 0.330 3.670 9 O -0.418 6.418 10 N -0.363 5.363 11 C 0.002 3.998 12 H 0.124 0.876 13 C -0.034 4.034 14 O -0.283 6.283 15 C 0.014 3.986 16 C 0.040 3.960 17 N -0.334 5.334 18 C -0.346 4.346 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.009 4.009 27 C -0.155 4.155 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.538 -11.647 -3.728 22.209 hybrid contribution 1.294 0.156 -0.751 1.504 sum -17.244 -11.491 -4.479 21.201 Atomic orbital electron populations 1.21741 0.95161 1.01634 1.02195 1.21159 0.96306 0.93618 1.02172 1.22498 0.91315 0.98738 1.01101 0.86392 1.23122 1.01901 1.03271 0.90266 1.22305 0.97825 0.98929 1.02202 0.85820 1.19699 0.82210 0.85527 0.79571 1.90698 1.53915 1.48581 1.48603 1.45804 1.07051 1.28181 1.55275 1.22823 0.97078 0.88510 0.91416 0.87631 1.23655 0.92554 0.93279 0.93946 1.88402 1.49942 1.58363 1.31557 1.24212 0.94741 0.95404 0.84219 1.22510 0.87354 0.89841 0.96305 1.45698 1.11506 1.17308 1.58853 1.19029 0.92712 0.99058 1.23825 0.90013 1.24801 0.97463 0.97175 1.01078 1.69835 1.21767 1.15866 1.49325 0.86023 0.81355 0.78907 0.79347 1.20421 1.21700 1.21699 1.22829 0.87903 0.92727 0.97431 1.22853 0.92714 1.01704 0.98263 0.92455 0.92518 0.92628 0.91642 0.91377 0.88224 0.87751 0.76121 0.92309 0.89987 0.94707 0.90549 0.93642 0.93485 0.93906 0.89134 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.87 37.16 0.37 -0.54 16 2 C -0.10 -0.62 6.22 -26.73 -0.17 -0.78 16 3 C -0.12 -1.00 5.25 -90.58 -0.48 -1.47 16 4 H 0.12 1.21 7.60 -51.93 -0.39 0.82 16 5 C -0.15 -1.16 9.88 -26.70 -0.26 -1.42 16 6 C -0.19 -1.70 5.91 -91.78 -0.54 -2.24 16 7 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 8 C 0.54 6.72 7.61 -10.98 -0.08 6.64 16 9 O -0.54 -8.73 15.90 5.56 0.09 -8.64 16 10 N -0.71 -8.25 5.21 -51.52 -0.27 -8.52 16 11 C 0.11 1.53 3.48 -65.57 -0.23 1.30 16 12 H 0.11 1.65 7.54 -51.93 -0.39 1.26 16 13 C 0.04 0.66 7.49 38.22 0.29 0.95 16 14 O -0.37 -6.88 11.14 -35.23 -0.39 -7.27 16 15 C 0.05 1.08 1.68 -90.05 -0.15 0.93 16 16 C 0.17 3.99 7.01 -3.25 -0.02 3.97 16 17 N -0.61 -15.64 3.67 -181.31 -0.67 -16.31 16 18 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -27.03 11.39 55.49 0.63 -26.39 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.12 2.52 8.37 -3.24 -0.03 2.50 16 27 C -0.12 -1.92 5.98 -25.03 -0.15 -2.07 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 35 H 0.40 3.71 8.57 -40.82 -0.35 3.37 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.96 7.05 -51.93 -0.37 1.59 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 41 H 0.05 0.94 7.98 -51.93 -0.41 0.53 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.55 7.83 -51.93 -0.41 1.14 16 44 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -32.55 361.03 -9.23 -41.78 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.33 Total: 1.83 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.71 Total: 1.13 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.30 Total: -51.23 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.30 Total: -15.91 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.55 -9.23 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053932752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.912 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds