Wall clock time and date at job start Tue Mar 31 2020 07:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47337 * 2 1 4 4 H 1.09003 * 115.54670 * 29.33174 * 3 2 1 5 5 C 1.53075 * 117.49604 * 243.60722 * 3 2 1 6 6 C 1.52994 * 117.50115 * 175.00591 * 3 2 1 7 7 H 1.09005 * 117.49809 * 359.97305 * 6 3 2 8 8 C 1.50699 * 117.49648 * 214.98326 * 6 3 2 9 9 O 1.21276 * 120.00350 * 0.08224 * 8 6 3 10 10 N 1.34782 * 119.99856 * 180.08455 * 8 6 3 11 11 C 1.46500 * 120.00153 * 179.97438 * 10 8 6 12 12 H 1.08998 * 110.97449 * 329.15841 * 11 10 8 13 13 C 1.55007 * 111.14642 * 93.33922 * 11 10 8 14 14 O 1.43871 * 105.17319 * 154.05275 * 13 11 10 15 15 C 1.42525 * 109.62188 * 335.68983 * 14 13 11 16 16 C 1.53259 * 115.54447 * 231.51348 * 15 14 13 17 17 N 1.47712 * 85.91544 * 219.84230 * 16 15 14 18 18 C 1.36944 * 134.43851 * 204.13526 * 17 16 15 19 19 H 1.07999 * 120.00176 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00071 * 0.03064 * 18 17 16 21 21 N 1.31625 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00329 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46895 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47579 * 119.99659 * 22 20 18 25 25 H 1.48500 * 109.47101 * 240.00029 * 22 20 18 26 26 C 1.47710 * 91.12576 * 24.15621 * 17 16 15 27 27 C 1.53769 * 108.38244 * 1.87130 * 15 14 13 28 28 H 1.09001 * 109.46732 * 299.99653 * 1 2 3 29 29 H 1.08995 * 109.47258 * 59.99499 * 1 2 3 30 30 H 1.08998 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46732 * 240.00347 * 2 1 3 32 32 H 1.08995 * 109.47258 * 120.00501 * 2 1 3 33 33 H 1.09004 * 117.51165 * 145.03266 * 5 3 2 34 34 H 1.08995 * 117.49532 * 0.02562 * 5 3 2 35 35 H 0.97000 * 119.99794 * 359.97438 * 10 8 6 36 36 H 1.09003 * 110.30204 * 35.12434 * 13 11 10 37 37 H 1.08998 * 110.30276 * 272.98080 * 13 11 10 38 38 H 1.09006 * 113.80649 * 334.08997 * 16 15 14 39 39 H 1.08999 * 113.80153 * 105.59331 * 16 15 14 40 40 H 0.97004 * 119.99766 * 179.97438 * 21 20 18 41 41 H 1.08995 * 113.80092 * 221.59946 * 26 17 16 42 42 H 1.08995 * 113.90504 * 90.10632 * 26 17 16 43 43 H 1.08996 * 110.92090 * 139.14470 * 27 15 14 44 44 H 1.09004 * 110.91868 * 262.74403 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4818 5 6 2.8448 1.9076 -1.2163 6 6 3.5502 1.6579 0.1181 7 1 4.1803 0.7719 0.1963 8 6 4.0229 2.8619 0.8913 9 8 3.2159 3.6157 1.3928 10 7 5.3425 3.1011 1.0255 11 6 5.8021 4.2719 1.7767 12 1 5.0880 5.0915 1.6971 13 6 6.0765 3.9126 3.2594 14 8 7.0530 4.8708 3.7045 15 6 7.7845 5.3639 2.5851 16 6 9.3105 5.2999 2.7126 17 7 9.3152 6.6235 2.0570 18 6 10.2316 7.3251 1.3199 19 1 9.9835 8.3059 0.9419 20 6 11.4792 6.7757 1.0586 21 7 11.7817 5.5806 1.5198 22 14 12.7295 7.7330 0.0539 23 1 12.1485 9.0406 -0.3434 24 1 13.9501 7.9603 0.8687 25 1 13.0837 6.9590 -1.1630 26 6 7.9360 6.8877 2.5151 27 6 7.2175 4.7154 1.3114 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.7225 2.9428 -1.5350 34 1 3.0101 1.1859 -2.0162 35 1 5.9879 2.4980 0.6247 36 1 6.4765 2.9015 3.3357 37 1 5.1624 4.0037 3.8460 38 1 9.6671 5.3178 3.7426 39 1 9.7691 4.5116 2.1156 40 1 12.6534 5.1965 1.3369 41 1 7.3047 7.3583 1.7615 42 1 7.8797 7.3804 3.4857 43 1 7.1512 5.4416 0.5013 44 1 7.8169 3.8554 1.0126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053932752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:51 Heat of formation + Delta-G solvation = -28.287243 kcal Electronic energy + Delta-G solvation = -23601.303861 eV Core-core repulsion = 20134.183884 eV Total energy + Delta-G solvation = -3467.119977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68235 -40.76529 -38.32481 -37.68099 -35.71324 -34.15068 -32.95687 -31.58226 -29.91229 -27.37848 -26.79493 -25.73657 -24.59134 -23.86248 -22.48870 -21.59224 -21.08057 -20.41659 -18.81618 -18.46301 -17.70272 -17.06896 -16.69834 -16.47053 -16.06242 -15.88074 -15.63584 -15.29218 -15.18207 -14.71262 -14.57178 -14.21438 -13.89399 -13.52176 -13.41977 -13.35415 -12.96194 -12.90138 -12.85815 -12.61357 -12.56442 -12.39980 -12.16149 -11.91355 -11.90275 -11.81194 -11.59527 -11.25237 -11.05197 -10.91720 -10.77699 -10.40420 -10.12608 -8.99214 -7.93335 -5.28172 1.42399 1.46345 1.47587 1.57922 1.95209 2.42813 2.85260 2.86501 3.21979 3.36283 3.45187 3.60138 3.66730 3.73998 3.78255 3.88257 3.98789 4.05951 4.23034 4.30881 4.51217 4.58607 4.62731 4.65262 4.72479 4.79759 4.81138 4.86911 4.89908 4.96600 4.99515 5.01332 5.11654 5.18124 5.19726 5.25011 5.32099 5.39681 5.46394 5.52450 5.85817 6.14902 6.48404 6.88282 7.17448 7.55936 8.50322 9.24139 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.002844 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.302697 B = 9842.327588 C =10353.084366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.122 4.122 4 H 0.093 0.907 5 C -0.138 4.138 6 C -0.193 4.193 7 H 0.152 0.848 8 C 0.541 3.459 9 O -0.583 6.583 10 N -0.701 5.701 11 C 0.124 3.876 12 H 0.095 0.905 13 C 0.041 3.959 14 O -0.380 6.380 15 C 0.078 3.922 16 C 0.162 3.838 17 N -0.629 5.629 18 C -0.233 4.233 19 H 0.087 0.913 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.982 3.018 23 H -0.265 1.265 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.114 3.886 27 C -0.108 4.108 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.419 0.581 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.010 0.990 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 -13.491 -5.650 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.141 4.141 4 H 0.111 0.889 5 C -0.175 4.175 6 C -0.214 4.214 7 H 0.170 0.830 8 C 0.329 3.671 9 O -0.463 6.463 10 N -0.353 5.353 11 C 0.018 3.982 12 H 0.113 0.887 13 C -0.036 4.036 14 O -0.298 6.298 15 C 0.037 3.963 16 C 0.036 3.964 17 N -0.357 5.357 18 C -0.361 4.361 19 H 0.104 0.896 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.810 3.190 23 H -0.190 1.190 24 H -0.221 1.221 25 H -0.214 1.214 26 C -0.011 4.011 27 C -0.146 4.146 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.149 0.851 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.419 -12.822 -5.227 23.850 hybrid contribution 1.494 0.530 -0.212 1.600 sum -17.925 -12.292 -5.439 22.405 Atomic orbital electron populations 1.21752 0.95115 1.02222 1.01761 1.21160 0.96331 0.92211 1.03056 1.22503 0.90701 0.99492 1.01418 0.88891 1.23217 1.00568 1.03318 0.90387 1.22360 0.98418 0.98161 1.02439 0.83015 1.20327 0.81743 0.85978 0.79024 1.90685 1.54929 1.50281 1.50418 1.45678 1.07412 1.27461 1.54743 1.22459 0.95429 0.89282 0.91064 0.88739 1.23859 0.92061 0.93204 0.94492 1.88375 1.50597 1.59260 1.31562 1.23730 0.92131 0.94400 0.86053 1.22401 0.90721 0.88925 0.94342 1.45996 1.12804 1.18019 1.58905 1.19412 0.93449 0.99429 1.23824 0.89570 1.25659 0.99359 0.98216 1.02552 1.70013 1.21949 1.17343 1.50736 0.84960 0.78402 0.78081 0.77551 1.18972 1.22134 1.21420 1.22961 0.86146 0.94387 0.97630 1.22734 0.93875 1.01667 0.96347 0.93433 0.92494 0.91496 0.89958 0.91196 0.89504 0.85059 0.74376 0.90607 0.89144 0.97177 0.92511 0.94061 0.91617 0.94075 0.89521 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.87 71.98 0.71 -0.88 16 2 C -0.09 -0.96 6.22 30.60 0.19 -0.77 16 3 C -0.12 -1.87 5.25 -10.77 -0.06 -1.93 16 4 H 0.09 1.91 7.60 -2.39 -0.02 1.90 16 5 C -0.14 -1.82 9.88 30.62 0.30 -1.51 16 6 C -0.19 -2.96 5.91 -11.54 -0.07 -3.02 16 7 H 0.15 1.48 8.14 -2.38 -0.02 1.46 16 8 C 0.54 12.53 7.61 87.66 0.67 13.20 16 9 O -0.58 -18.55 15.90 -3.02 -0.05 -18.60 16 10 N -0.70 -14.81 5.21 -435.32 -2.27 -17.07 16 11 C 0.12 3.36 3.48 46.52 0.16 3.52 16 12 H 0.09 2.85 7.54 -2.39 -0.02 2.84 16 13 C 0.04 1.19 7.49 72.67 0.54 1.73 16 14 O -0.38 -14.07 11.14 -148.98 -1.66 -15.73 16 15 C 0.08 3.05 1.68 -10.31 -0.02 3.03 16 16 C 0.16 8.00 7.01 86.23 0.60 8.61 16 17 N -0.63 -32.90 3.67 -732.85 -2.69 -35.59 16 18 C -0.23 -13.09 10.70 84.03 0.90 -12.19 16 19 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 20 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 21 N -0.95 -56.87 11.39 21.65 0.25 -56.62 16 22 Si 0.98 45.28 29.55 68.60 2.03 47.30 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 26 C 0.11 4.90 8.37 86.24 0.72 5.62 16 27 C -0.11 -3.43 5.98 31.70 0.19 -3.24 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.62 7.88 -2.39 -0.02 0.60 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.13 1.05 8.03 -2.39 -0.02 1.03 16 35 H 0.42 6.53 8.57 -92.71 -0.79 5.74 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 38 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.06 3.00 7.05 -2.39 -0.02 2.98 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.07 2.57 7.98 -2.39 -0.02 2.55 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 2.85 7.83 -2.39 -0.02 2.84 16 44 H 0.09 2.77 7.87 -2.38 -0.02 2.75 16 Total: -1.00 -71.19 361.03 1.12 -70.08 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.19 Total: 17.25 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.32 Total: 8.98 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -4.71 Total: -109.28 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -1.71 Total: -34.33 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.19 1.12 -70.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053932752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.788 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds