Wall clock time and date at job start Tue Mar 31 2020 07:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32997 * 119.99972 * 2 1 4 4 C 1.50699 * 119.99972 * 179.97438 * 3 2 1 5 5 C 1.47099 * 119.99984 * 359.97438 * 3 2 1 6 6 O 1.21618 * 120.00305 * 311.79647 * 5 3 2 7 7 N 1.34780 * 119.99914 * 131.79617 * 5 3 2 8 8 C 1.46831 * 120.41019 * 7.93183 * 7 5 3 9 9 C 1.53366 * 109.25033 * 232.24743 * 8 7 5 10 10 C 1.52788 * 108.81798 * 306.16668 * 9 8 7 11 11 H 1.08994 * 109.34986 * 302.84571 * 10 9 8 12 12 O 1.42603 * 111.11172 * 182.52707 * 10 9 8 13 13 C 1.43158 * 113.63058 * 176.39091 * 12 10 9 14 14 C 1.53185 * 109.74103 * 61.68525 * 13 12 10 15 15 N 1.47353 * 108.80366 * 308.79458 * 14 13 12 16 16 C 1.36945 * 121.30116 * 230.50983 * 15 14 13 17 17 H 1.07990 * 119.99409 * 157.85990 * 16 15 14 18 18 C 1.38809 * 120.00270 * 337.86060 * 16 15 14 19 19 N 1.31623 * 120.00123 * 340.39251 * 18 16 15 20 20 Si 1.86796 * 120.00174 * 160.38892 * 18 16 15 21 21 H 1.48506 * 109.47001 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47151 * 119.99667 * 20 18 16 23 23 H 1.48496 * 109.47524 * 240.00104 * 20 18 16 24 24 C 1.46864 * 117.39066 * 50.23732 * 15 14 13 25 25 H 1.09004 * 109.65395 * 67.65053 * 24 15 14 26 26 C 1.47294 * 119.86767 * 188.37626 * 7 5 3 27 27 H 1.08991 * 109.47423 * 59.99942 * 1 2 3 28 28 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46832 * 299.99906 * 1 2 3 30 30 H 1.08004 * 120.00261 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47246 * 294.35912 * 4 3 2 32 32 H 1.08995 * 109.47287 * 54.35987 * 4 3 2 33 33 H 1.09003 * 109.47079 * 174.36291 * 4 3 2 34 34 H 1.08999 * 109.50778 * 112.31726 * 8 7 5 35 35 H 1.09000 * 109.54505 * 352.20563 * 8 7 5 36 36 H 1.09000 * 109.57998 * 186.36845 * 9 8 7 37 37 H 1.08994 * 109.69089 * 66.03554 * 9 8 7 38 38 H 1.08996 * 109.42035 * 181.77021 * 13 12 10 39 39 H 1.09001 * 109.42121 * 301.65839 * 13 12 10 40 40 H 1.09006 * 109.58424 * 188.99507 * 14 13 12 41 41 H 1.09009 * 109.58204 * 68.59153 * 14 13 12 42 42 H 0.96994 * 120.00276 * 180.02562 * 19 18 16 43 43 H 1.09001 * 110.31931 * 7.47729 * 26 7 5 44 44 H 1.09003 * 109.22005 * 246.75529 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.5248 2.6012 -0.7862 7 7 1.7729 3.3985 0.8695 8 6 2.9761 3.2684 1.7009 9 6 2.6023 3.4970 3.1707 10 6 1.8780 4.8368 3.2924 11 1 2.5166 5.6292 2.9022 12 8 1.5584 5.1262 4.6517 13 6 0.9504 6.4089 4.8376 14 6 -0.3758 6.4686 4.0732 15 7 -0.1420 6.0420 2.6823 16 6 -0.5769 6.7951 1.6245 17 1 -0.1138 6.6830 0.6554 18 6 -1.6130 7.7024 1.7979 19 7 -2.4266 7.5838 2.8258 20 14 -1.8527 9.0918 0.5726 21 1 -0.8135 9.0042 -0.4847 22 1 -3.1981 8.9798 -0.0459 23 1 -1.7373 10.3957 1.2738 24 6 0.5812 4.7806 2.4750 25 1 -0.0316 3.9463 2.8163 26 6 0.9241 4.5957 0.9955 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0470 -0.9353 0.0004 31 1 4.0419 0.7281 0.9370 32 1 4.0426 0.5528 -0.8343 33 1 4.0423 2.1745 -0.1005 34 1 3.7131 4.0103 1.3932 35 1 3.3947 2.2689 1.5829 36 1 3.5065 3.5140 3.7792 37 1 1.9474 2.6954 3.5120 38 1 0.7647 6.5715 5.8992 39 1 1.6188 7.1844 4.4635 40 1 -0.7575 7.4896 4.0830 41 1 -1.0987 5.8017 4.5433 42 1 -3.1508 8.2176 2.9468 43 1 0.0079 4.4725 0.4181 44 1 1.4736 5.4648 0.6338 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074208419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:12 Heat of formation + Delta-G solvation = -24.921142 kcal Electronic energy + Delta-G solvation = -25461.541409 eV Core-core repulsion = 21994.567397 eV Total energy + Delta-G solvation = -3466.974012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.31163 -38.69410 -36.10810 -35.26213 -34.66029 -31.88715 -31.38765 -30.45171 -29.54037 -27.10317 -25.83239 -24.62427 -23.73010 -22.60884 -21.79264 -20.53968 -19.62128 -18.20446 -16.84221 -16.41356 -15.63133 -15.48940 -15.15028 -15.10932 -14.72959 -14.22681 -14.07206 -13.86988 -13.53761 -13.32306 -13.12951 -13.03154 -12.83853 -12.69671 -12.45633 -12.12449 -11.85318 -11.74420 -11.53396 -11.29938 -10.99653 -10.97759 -10.74945 -10.57183 -10.26095 -10.20093 -9.91423 -9.62908 -9.46112 -9.03946 -8.96680 -8.52679 -8.30890 -6.80597 -5.84606 -3.24067 1.57383 3.02463 3.30738 3.35443 3.43999 3.46016 4.24912 4.43523 4.57518 4.76991 4.88784 5.14052 5.16289 5.24746 5.31133 5.33903 5.39963 5.43390 5.52729 5.64113 5.73085 5.74765 5.78259 5.79337 5.87529 5.93841 6.03358 6.10401 6.14596 6.25807 6.32671 6.42444 6.46331 6.50429 6.64065 6.74768 6.86028 7.13364 7.50072 7.65016 7.71138 7.88787 8.28773 8.40206 9.08824 9.73688 10.28531 11.23552 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.005488 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.763808 B = 5100.523484 C = 6083.787195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.185 4.185 4 C -0.114 4.114 5 C 0.554 3.446 6 O -0.536 6.536 7 N -0.606 5.606 8 C 0.099 3.901 9 C -0.125 4.125 10 C 0.077 3.923 11 H 0.052 0.948 12 O -0.390 6.390 13 C 0.039 3.961 14 C 0.138 3.862 15 N -0.589 5.589 16 C -0.255 4.255 17 H 0.076 0.924 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.138 3.862 25 H 0.035 0.965 26 C 0.125 3.875 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.102 0.898 41 H 0.026 0.974 42 H 0.254 0.746 43 H 0.102 0.898 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.906 -11.828 -0.507 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.188 4.188 4 C -0.171 4.171 5 C 0.343 3.657 6 O -0.413 6.413 7 N -0.340 5.340 8 C -0.024 4.024 9 C -0.163 4.163 10 C 0.017 3.983 11 H 0.070 0.930 12 O -0.309 6.309 13 C -0.038 4.038 14 C 0.012 3.988 15 N -0.313 5.313 16 C -0.384 4.384 17 H 0.093 0.907 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.030 3.970 25 H 0.053 0.947 26 C 0.003 3.997 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.120 0.880 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.120 0.880 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.297 -11.708 -0.760 16.997 hybrid contribution -0.287 1.011 -0.545 1.184 sum 12.010 -10.697 -1.306 16.136 Atomic orbital electron populations 1.21024 0.92291 1.02092 1.03962 1.23333 0.96799 0.96436 0.94391 1.21466 0.96444 0.93452 1.07418 1.20950 0.90818 1.03106 1.02183 1.18491 0.83245 0.83451 0.80531 1.90786 1.31161 1.80769 1.38602 1.48277 1.26030 1.20440 1.39210 1.22140 0.87103 1.03410 0.89754 1.21863 1.01012 0.97639 0.95814 1.22417 0.96359 0.95582 0.83894 0.93015 1.87741 1.80923 1.36865 1.25403 1.23328 0.96580 0.83902 1.00018 1.21539 0.91618 1.02527 0.83073 1.44103 1.65413 1.19330 1.02488 1.19240 1.12482 1.15701 0.90954 0.90661 1.24927 0.95345 1.01164 0.98170 1.70059 1.16556 1.36678 1.31299 0.86225 0.77729 0.82307 0.80590 1.20185 1.21649 1.21504 1.21267 0.92364 0.90671 0.92732 0.94726 1.21795 0.95567 0.84969 0.97357 0.89431 0.92169 0.91369 0.85988 0.90726 0.91281 0.91195 0.91341 0.87994 0.90348 0.90910 0.90057 0.94108 0.88001 0.95569 0.93572 0.88010 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.89 36.00 0.32 -1.38 16 2 C -0.09 -1.00 9.99 -36.13 -0.36 -1.36 16 3 C -0.18 -2.27 5.23 -102.85 -0.54 -2.80 16 4 C -0.11 -0.97 8.10 36.00 0.29 -0.68 16 5 C 0.55 9.18 6.59 -12.66 -0.08 9.10 16 6 O -0.54 -10.91 14.50 5.26 0.08 -10.83 16 7 N -0.61 -9.80 2.99 -173.95 -0.52 -10.32 16 8 C 0.10 1.21 5.18 -3.67 -0.02 1.19 16 9 C -0.12 -1.72 5.82 -26.65 -0.16 -1.88 16 10 C 0.08 1.41 2.50 -26.63 -0.07 1.34 16 11 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 12 O -0.39 -7.71 10.49 -35.23 -0.37 -8.08 16 13 C 0.04 0.78 6.95 37.25 0.26 1.04 16 14 C 0.14 3.31 5.51 -3.48 -0.02 3.29 16 15 N -0.59 -14.68 3.06 -164.36 -0.50 -15.18 16 16 C -0.26 -6.85 8.97 -15.06 -0.14 -6.99 16 17 H 0.08 1.98 6.16 -52.49 -0.32 1.66 16 18 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 19 N -0.90 -25.89 11.03 55.49 0.61 -25.28 16 20 Si 0.90 21.66 29.60 -169.99 -5.03 16.63 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 C 0.14 2.94 3.00 -67.53 -0.20 2.74 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 C 0.12 2.48 4.44 -3.61 -0.02 2.46 16 27 H 0.09 1.28 6.89 -51.93 -0.36 0.92 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.07 0.49 7.47 -51.93 -0.39 0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.98 3.72 -51.93 -0.19 0.79 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 2.66 5.93 -51.93 -0.31 2.35 16 41 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.10 2.33 6.84 -51.93 -0.36 1.98 16 44 H 0.07 1.43 7.38 -51.93 -0.38 1.05 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -31.75 335.92 -8.34 -40.09 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.85 Total: 1.86 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.81 Total: 6.05 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.41 Total: -50.78 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.29 Total: -18.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.75 -8.34 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.169 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds