Wall clock time and date at job start Tue Mar 31 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32997 * 119.99972 * 2 1 4 4 C 1.50699 * 119.99972 * 179.97438 * 3 2 1 5 5 C 1.47099 * 119.99984 * 359.97438 * 3 2 1 6 6 O 1.21618 * 120.00305 * 311.79647 * 5 3 2 7 7 N 1.34780 * 119.99914 * 131.79617 * 5 3 2 8 8 C 1.46831 * 120.41019 * 7.93183 * 7 5 3 9 9 C 1.53366 * 109.25033 * 232.24743 * 8 7 5 10 10 C 1.52788 * 108.81798 * 306.16668 * 9 8 7 11 11 H 1.08994 * 109.34986 * 302.84571 * 10 9 8 12 12 O 1.42603 * 111.11172 * 182.52707 * 10 9 8 13 13 C 1.43158 * 113.63058 * 176.39091 * 12 10 9 14 14 C 1.53185 * 109.74103 * 61.68525 * 13 12 10 15 15 N 1.47353 * 108.80366 * 308.79458 * 14 13 12 16 16 C 1.36945 * 121.30116 * 230.50983 * 15 14 13 17 17 H 1.07990 * 119.99409 * 157.85990 * 16 15 14 18 18 C 1.38809 * 120.00270 * 337.86060 * 16 15 14 19 19 N 1.31623 * 120.00123 * 340.39251 * 18 16 15 20 20 Si 1.86796 * 120.00174 * 160.38892 * 18 16 15 21 21 H 1.48506 * 109.47001 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47151 * 119.99667 * 20 18 16 23 23 H 1.48496 * 109.47524 * 240.00104 * 20 18 16 24 24 C 1.46864 * 117.39066 * 50.23732 * 15 14 13 25 25 H 1.09004 * 109.65395 * 67.65053 * 24 15 14 26 26 C 1.47294 * 119.86767 * 188.37626 * 7 5 3 27 27 H 1.08991 * 109.47423 * 59.99942 * 1 2 3 28 28 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46832 * 299.99906 * 1 2 3 30 30 H 1.08004 * 120.00261 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47246 * 294.35912 * 4 3 2 32 32 H 1.08995 * 109.47287 * 54.35987 * 4 3 2 33 33 H 1.09003 * 109.47079 * 174.36291 * 4 3 2 34 34 H 1.08999 * 109.50778 * 112.31726 * 8 7 5 35 35 H 1.09000 * 109.54505 * 352.20563 * 8 7 5 36 36 H 1.09000 * 109.57998 * 186.36845 * 9 8 7 37 37 H 1.08994 * 109.69089 * 66.03554 * 9 8 7 38 38 H 1.08996 * 109.42035 * 181.77021 * 13 12 10 39 39 H 1.09001 * 109.42121 * 301.65839 * 13 12 10 40 40 H 1.09006 * 109.58424 * 188.99507 * 14 13 12 41 41 H 1.09009 * 109.58204 * 68.59153 * 14 13 12 42 42 H 0.96994 * 120.00276 * 180.02562 * 19 18 16 43 43 H 1.09001 * 110.31931 * 7.47729 * 26 7 5 44 44 H 1.09003 * 109.22005 * 246.75529 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.5248 2.6012 -0.7862 7 7 1.7729 3.3985 0.8695 8 6 2.9761 3.2684 1.7009 9 6 2.6023 3.4970 3.1707 10 6 1.8780 4.8368 3.2924 11 1 2.5166 5.6292 2.9022 12 8 1.5584 5.1262 4.6517 13 6 0.9504 6.4089 4.8376 14 6 -0.3758 6.4686 4.0732 15 7 -0.1420 6.0420 2.6823 16 6 -0.5769 6.7951 1.6245 17 1 -0.1138 6.6830 0.6554 18 6 -1.6130 7.7024 1.7979 19 7 -2.4266 7.5838 2.8258 20 14 -1.8527 9.0918 0.5726 21 1 -0.8135 9.0042 -0.4847 22 1 -3.1981 8.9798 -0.0459 23 1 -1.7373 10.3957 1.2738 24 6 0.5812 4.7806 2.4750 25 1 -0.0316 3.9463 2.8163 26 6 0.9241 4.5957 0.9955 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0470 -0.9353 0.0004 31 1 4.0419 0.7281 0.9370 32 1 4.0426 0.5528 -0.8343 33 1 4.0423 2.1745 -0.1005 34 1 3.7131 4.0103 1.3932 35 1 3.3947 2.2689 1.5829 36 1 3.5065 3.5140 3.7792 37 1 1.9474 2.6954 3.5120 38 1 0.7647 6.5715 5.8992 39 1 1.6188 7.1844 4.4635 40 1 -0.7575 7.4896 4.0830 41 1 -1.0987 5.8017 4.5433 42 1 -3.1508 8.2176 2.9468 43 1 0.0079 4.4725 0.4181 44 1 1.4736 5.4648 0.6338 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074208419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:11 Heat of formation + Delta-G solvation = -46.353270 kcal Electronic energy + Delta-G solvation = -25462.470776 eV Core-core repulsion = 21994.567397 eV Total energy + Delta-G solvation = -3467.903379 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66042 -40.21976 -37.51329 -36.65571 -36.14378 -33.54277 -33.00190 -31.73903 -30.79867 -28.92188 -27.20035 -25.97398 -25.06186 -24.12154 -23.20242 -22.02705 -21.27500 -19.41508 -18.71092 -17.82157 -17.15439 -16.94618 -16.72230 -16.34320 -16.27381 -15.71617 -15.58515 -15.28120 -14.75373 -14.73402 -14.59537 -14.56336 -14.14439 -13.82935 -13.61996 -13.38200 -13.18021 -13.01197 -12.88390 -12.80857 -12.62375 -12.40267 -12.36142 -12.19798 -12.03098 -11.91522 -11.64228 -11.28069 -10.83270 -10.73151 -10.52961 -9.92384 -9.66020 -8.84077 -7.95076 -5.37815 0.60443 1.41412 1.43589 1.53872 1.75600 2.08573 2.44806 2.80431 3.18218 3.41409 3.52435 3.80816 3.89042 3.98705 4.04686 4.14552 4.21198 4.34239 4.36820 4.45503 4.47651 4.53041 4.60728 4.62835 4.68060 4.77159 4.83367 4.88207 4.89759 4.94920 5.00233 5.06885 5.11758 5.23377 5.28891 5.41090 5.48357 5.51915 5.59084 5.68547 6.20071 6.30436 6.41469 7.00425 7.11466 7.69471 8.22100 9.11431 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.005488 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.763808 B = 5100.523484 C = 6083.787195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.195 4.195 4 C -0.111 4.111 5 C 0.543 3.457 6 O -0.588 6.588 7 N -0.607 5.607 8 C 0.096 3.904 9 C -0.116 4.116 10 C 0.081 3.919 11 H 0.056 0.944 12 O -0.392 6.392 13 C 0.052 3.948 14 C 0.141 3.859 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.075 0.925 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.296 1.296 23 H -0.283 1.283 24 C 0.136 3.864 25 H 0.003 0.997 26 C 0.140 3.860 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.168 0.832 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.078 0.922 41 H -0.005 1.005 42 H 0.252 0.748 43 H 0.058 0.942 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.716 -13.500 -0.317 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.168 4.168 5 C 0.334 3.666 6 O -0.470 6.470 7 N -0.339 5.339 8 C -0.024 4.024 9 C -0.154 4.154 10 C 0.021 3.979 11 H 0.074 0.926 12 O -0.311 6.311 13 C -0.025 4.025 14 C 0.015 3.985 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.093 0.907 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.223 1.223 23 H -0.209 1.209 24 C 0.028 3.972 25 H 0.021 0.979 26 C 0.017 3.983 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.186 0.814 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.168 -13.404 -0.551 21.008 hybrid contribution -1.563 1.453 -0.626 2.224 sum 14.604 -11.951 -1.176 18.908 Atomic orbital electron populations 1.21009 0.94272 1.03078 1.01325 1.23664 0.95625 0.97910 0.92677 1.21591 0.98573 0.90922 1.08749 1.21034 0.87264 1.03839 1.04624 1.19442 0.82819 0.84805 0.79503 1.90761 1.33621 1.81810 1.40761 1.48369 1.26647 1.19040 1.39829 1.22550 0.85554 1.06431 0.87897 1.21906 1.01767 0.94257 0.97510 1.22513 0.94403 0.98491 0.82446 0.92617 1.87751 1.80482 1.36667 1.26172 1.23174 0.93975 0.84438 1.00946 1.21421 0.93594 1.00190 0.83250 1.44395 1.65667 1.20574 1.02483 1.19515 1.12174 1.15671 0.91574 0.90726 1.25681 0.95345 1.03380 1.00120 1.70205 1.17224 1.37508 1.33154 0.85240 0.77237 0.79524 0.78684 1.19239 1.22295 1.20907 1.21408 0.93372 0.88024 0.94350 0.97934 1.21276 0.94641 0.86814 0.95613 0.92445 0.89279 0.93890 0.81422 0.87629 0.89428 0.91263 0.89149 0.84247 0.86587 0.91617 0.87200 0.93198 0.90417 0.98677 0.93926 0.92334 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.89 71.24 0.63 -2.83 16 2 C -0.08 -1.54 9.99 24.52 0.24 -1.29 16 3 C -0.20 -4.28 5.23 -18.70 -0.10 -4.38 16 4 C -0.11 -1.33 8.10 71.24 0.58 -0.76 16 5 C 0.54 18.05 6.59 86.57 0.57 18.62 16 6 O -0.59 -25.36 14.50 -4.09 -0.06 -25.42 16 7 N -0.61 -19.37 2.99 -822.52 -2.46 -21.83 16 8 C 0.10 2.03 5.18 86.44 0.45 2.48 16 9 C -0.12 -2.83 5.82 30.65 0.18 -2.65 16 10 C 0.08 2.84 2.50 30.66 0.08 2.91 16 11 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 12 O -0.39 -14.86 10.49 -148.98 -1.56 -16.42 16 13 C 0.05 2.03 6.95 72.04 0.50 2.53 16 14 C 0.14 7.03 5.51 86.28 0.48 7.51 16 15 N -0.61 -31.52 3.06 -673.91 -2.06 -33.59 16 16 C -0.26 -14.55 8.97 84.03 0.75 -13.80 16 17 H 0.08 4.10 6.16 -2.92 -0.02 4.09 16 18 C -0.05 -2.85 4.93 84.86 0.42 -2.43 16 19 N -0.93 -56.11 11.03 21.65 0.24 -55.87 16 20 Si 0.97 45.89 29.60 68.60 2.03 47.92 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 C 0.14 6.00 3.00 45.05 0.13 6.14 16 25 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 26 C 0.14 5.81 4.44 86.22 0.38 6.19 16 27 H 0.06 1.77 6.89 -2.39 -0.02 1.75 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.25 8.09 -2.39 -0.02 1.23 16 30 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.11 0.66 7.47 -2.39 -0.02 0.64 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.87 6.56 -2.39 -0.02 0.85 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.14 1.97 3.72 -2.39 -0.01 1.96 16 36 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 40 H 0.08 4.24 5.93 -2.38 -0.01 4.23 16 41 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.06 2.91 6.84 -2.39 -0.02 2.89 16 44 H 0.07 2.83 7.38 -2.39 -0.02 2.81 16 Total: -1.00 -75.91 335.92 2.41 -73.49 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.99 Total: 13.47 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 5.30 Total: 18.25 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.28 Total: -111.29 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.62 Total: -41.84 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.91 2.41 -73.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.142 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds