Wall clock time and date at job start Tue Mar 31 2020 07:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 120.00056 * 2 1 4 4 C 1.50706 * 120.00019 * 0.02562 * 3 2 1 5 5 C 1.47098 * 120.00322 * 180.02562 * 3 2 1 6 6 O 1.21609 * 120.00092 * 311.86617 * 5 3 2 7 7 N 1.34773 * 119.99933 * 131.86784 * 5 3 2 8 8 C 1.46835 * 120.41373 * 7.91501 * 7 5 3 9 9 C 1.53365 * 109.25460 * 232.25141 * 8 7 5 10 10 C 1.52791 * 108.81339 * 306.16447 * 9 8 7 11 11 H 1.09001 * 109.34938 * 302.84105 * 10 9 8 12 12 O 1.42603 * 110.73285 * 182.29104 * 10 9 8 13 13 C 1.43145 * 113.63293 * 176.62449 * 12 10 9 14 14 C 1.53189 * 109.74060 * 61.68946 * 13 12 10 15 15 N 1.47352 * 108.80096 * 308.78479 * 14 13 12 16 16 C 1.36929 * 121.31058 * 230.51000 * 15 14 13 17 17 H 1.08003 * 120.00038 * 157.99721 * 16 15 14 18 18 C 1.38815 * 120.00342 * 338.00704 * 16 15 14 19 19 N 1.31621 * 119.99471 * 340.40349 * 18 16 15 20 20 Si 1.86790 * 120.00547 * 160.40472 * 18 16 15 21 21 H 1.48495 * 109.47436 * 89.99730 * 20 18 16 22 22 H 1.48503 * 109.47580 * 209.99985 * 20 18 16 23 23 H 1.48498 * 109.47166 * 329.99896 * 20 18 16 24 24 C 1.46871 * 117.38540 * 50.24744 * 15 14 13 25 25 H 1.09004 * 109.65758 * 67.64380 * 24 15 14 26 26 C 1.48212 * 120.00742 * 188.07353 * 7 5 3 27 27 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47139 * 299.99941 * 1 2 3 29 29 H 1.08997 * 109.47640 * 60.00059 * 1 2 3 30 30 H 1.07997 * 120.00619 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46627 * 294.31765 * 4 3 2 32 32 H 1.09001 * 109.47238 * 54.30464 * 4 3 2 33 33 H 1.08993 * 109.47494 * 174.31043 * 4 3 2 34 34 H 1.09000 * 109.51244 * 112.31099 * 8 7 5 35 35 H 1.09005 * 109.54168 * 352.20486 * 8 7 5 36 36 H 1.08996 * 109.58060 * 186.37069 * 9 8 7 37 37 H 1.09000 * 109.69184 * 66.02887 * 9 8 7 38 38 H 1.09000 * 109.42461 * 181.76696 * 13 12 10 39 39 H 1.09001 * 109.42620 * 301.65823 * 13 12 10 40 40 H 1.09006 * 109.57953 * 188.99628 * 14 13 12 41 41 H 1.08992 * 109.58766 * 68.58930 * 14 13 12 42 42 H 0.97001 * 120.00057 * 180.02562 * 19 18 16 43 43 H 1.09007 * 110.13244 * 7.66524 * 26 7 5 44 44 H 1.09002 * 109.87150 * 246.64817 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2514 0.4488 0.7833 7 7 4.3164 1.9311 -0.8698 8 6 3.6015 2.9093 -1.6993 9 6 3.9854 2.7022 -3.1697 10 6 5.5078 2.7453 -3.2922 11 1 5.8749 3.6941 -2.9008 12 8 5.9087 2.6093 -4.6540 13 6 7.3226 2.7181 -4.8495 14 6 8.0379 1.5977 -4.0882 15 7 7.5610 1.5912 -2.6940 16 6 8.4375 1.5892 -1.6420 17 1 8.1162 1.9351 -0.6707 18 6 9.7393 1.1427 -1.8241 19 7 10.0347 0.3783 -2.8540 20 14 11.0715 1.6265 -0.6074 21 1 11.1407 0.6161 0.4786 22 1 12.3801 1.6923 -1.3064 23 1 10.7528 2.9558 -0.0272 24 6 6.1084 1.5930 -2.4769 25 1 5.6861 0.6463 -2.8139 26 6 5.7875 1.8013 -0.9956 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 2.0471 -0.9352 0.0004 31 1 0.8700 2.5601 -0.9357 32 1 0.7178 2.4716 0.8355 33 1 2.1223 3.2828 0.1024 34 1 3.8753 3.9180 -1.3902 35 1 2.5267 2.7715 -1.5809 36 1 3.5476 3.4946 -3.7766 37 1 3.6187 1.7346 -3.5122 38 1 7.5489 2.6358 -5.9126 39 1 7.6665 3.6839 -4.4793 40 1 9.1136 1.7733 -4.1054 41 1 7.8149 0.6384 -4.5551 42 1 10.9442 0.0659 -2.9811 43 1 6.1393 0.9457 -0.4191 44 1 6.2715 2.7104 -0.6386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074208420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:15 Heat of formation + Delta-G solvation = -26.261518 kcal Electronic energy + Delta-G solvation = -25245.211445 eV Core-core repulsion = 21778.179310 eV Total energy + Delta-G solvation = -3467.032135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.24136 -38.65604 -36.03056 -35.69830 -34.69829 -31.84142 -31.37650 -30.20105 -29.19441 -27.06000 -26.59953 -24.95243 -23.82806 -22.27976 -21.66571 -20.16777 -19.57117 -18.18970 -16.84493 -16.73590 -15.93300 -15.43305 -15.38062 -15.06250 -14.60994 -14.19872 -14.11130 -13.90902 -13.69491 -13.25788 -13.09864 -13.03552 -12.81812 -12.63103 -12.48524 -12.36493 -12.04672 -11.68658 -11.44959 -11.29616 -10.99610 -10.97185 -10.76826 -10.55402 -10.26093 -10.23708 -9.91198 -9.63843 -9.56128 -9.11172 -8.99972 -8.51861 -8.32161 -6.80268 -5.84237 -3.23490 1.57207 2.99855 3.28319 3.36677 3.43724 3.45595 4.25836 4.43997 4.54780 4.80370 4.87776 5.03865 5.15049 5.18092 5.23374 5.28980 5.36441 5.41182 5.48066 5.53869 5.58033 5.67664 5.69339 5.74319 5.79298 5.90570 5.94249 6.10802 6.13980 6.24758 6.32074 6.33367 6.46117 6.48596 6.62784 6.72949 6.85903 7.13870 7.50585 7.64345 7.70630 7.89223 8.29111 8.38719 9.09089 9.74056 10.28957 11.23908 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.005029 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.382326 B = 5566.412881 C = 6567.898558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 C -0.177 4.177 4 C -0.115 4.115 5 C 0.553 3.447 6 O -0.539 6.539 7 N -0.608 5.608 8 C 0.099 3.901 9 C -0.125 4.125 10 C 0.078 3.922 11 H 0.053 0.947 12 O -0.390 6.390 13 C 0.039 3.961 14 C 0.138 3.862 15 N -0.589 5.589 16 C -0.257 4.257 17 H 0.075 0.925 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.137 3.863 25 H 0.036 0.964 26 C 0.126 3.874 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.102 0.898 41 H 0.026 0.974 42 H 0.255 0.745 43 H 0.101 0.899 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.731 5.930 0.447 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.117 4.117 3 C -0.180 4.180 4 C -0.171 4.171 5 C 0.341 3.659 6 O -0.417 6.417 7 N -0.341 5.341 8 C -0.024 4.024 9 C -0.164 4.164 10 C 0.018 3.982 11 H 0.071 0.929 12 O -0.309 6.309 13 C -0.039 4.039 14 C 0.013 3.987 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.093 0.907 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.029 3.971 25 H 0.053 0.947 26 C 0.004 3.996 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.120 0.880 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.323 5.462 0.688 18.177 hybrid contribution 1.139 0.167 0.588 1.293 sum -16.184 5.630 1.276 17.183 Atomic orbital electron populations 1.20900 0.92157 1.02798 1.02291 1.23322 0.96197 0.97353 0.94853 1.21416 0.93038 0.96762 1.06814 1.20970 0.99814 0.94151 1.02160 1.18499 0.87512 0.79379 0.80493 1.90812 1.69935 1.42159 1.38757 1.48471 1.08637 1.37756 1.39270 1.22141 0.98209 0.92229 0.89818 1.21872 0.95421 1.03278 0.95783 1.22421 0.93358 0.98589 0.83849 0.92947 1.87747 1.23806 1.94075 1.25263 1.23327 0.80722 0.99834 0.99976 1.21539 1.00172 0.94031 0.83002 1.44097 0.98347 1.86438 1.02477 1.19184 0.91563 1.36692 0.91085 0.90735 1.24921 0.98884 0.97594 0.98162 1.70051 1.19150 1.34272 1.31119 0.86297 0.81448 0.78599 0.80526 1.21258 1.21483 1.20446 1.21280 0.87267 0.95855 0.92700 0.94680 1.21975 0.76452 1.03770 0.97363 0.91636 0.91012 0.90980 0.86368 0.90621 0.91148 0.91253 0.91345 0.88027 0.90349 0.90894 0.90062 0.94106 0.87975 0.95578 0.93519 0.88060 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.15 36.00 0.33 -0.59 16 2 C -0.10 -1.09 9.87 -36.13 -0.36 -1.45 16 3 C -0.18 -2.19 5.23 -102.84 -0.54 -2.73 16 4 C -0.11 -0.97 7.12 36.01 0.26 -0.71 16 5 C 0.55 9.39 7.15 -12.67 -0.09 9.30 16 6 O -0.54 -11.49 16.43 5.27 0.09 -11.40 16 7 N -0.61 -9.95 3.00 -173.20 -0.52 -10.47 16 8 C 0.10 1.22 5.18 -3.67 -0.02 1.20 16 9 C -0.12 -1.73 5.81 -26.65 -0.15 -1.89 16 10 C 0.08 1.42 2.50 -26.63 -0.07 1.35 16 11 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 12 O -0.39 -7.72 10.47 -35.23 -0.37 -8.08 16 13 C 0.04 0.78 6.96 37.25 0.26 1.04 16 14 C 0.14 3.32 5.51 -3.48 -0.02 3.30 16 15 N -0.59 -14.78 3.06 -164.36 -0.50 -15.28 16 16 C -0.26 -6.93 8.98 -15.06 -0.14 -7.06 16 17 H 0.08 1.97 6.16 -52.48 -0.32 1.64 16 18 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 19 N -0.90 -25.96 11.02 55.49 0.61 -25.35 16 20 Si 0.90 21.69 29.60 -169.99 -5.03 16.66 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C 0.14 2.95 2.98 -67.53 -0.20 2.75 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 C 0.13 2.52 4.50 -3.11 -0.01 2.51 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.47 7.70 -51.92 -0.40 0.07 16 29 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 30 H 0.12 1.48 8.05 -52.49 -0.42 1.06 16 31 H 0.08 0.49 7.44 -51.93 -0.39 0.10 16 32 H 0.07 0.51 7.60 -51.93 -0.39 0.12 16 33 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.98 3.71 -51.93 -0.19 0.78 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 2.67 5.92 -51.93 -0.31 2.36 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.10 2.35 6.86 -51.92 -0.36 1.99 16 44 H 0.07 1.48 7.38 -51.93 -0.38 1.10 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -32.45 337.80 -8.34 -40.79 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.86 Total: 1.06 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.84 Total: 7.00 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.41 Total: -51.10 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.28 Total: -19.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.45 -8.34 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.525 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds