Wall clock time and date at job start Tue Mar 31 2020 07:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 120.00056 * 2 1 4 4 C 1.50706 * 120.00019 * 0.02562 * 3 2 1 5 5 C 1.47098 * 120.00322 * 180.02562 * 3 2 1 6 6 O 1.21609 * 120.00092 * 311.86617 * 5 3 2 7 7 N 1.34773 * 119.99933 * 131.86784 * 5 3 2 8 8 C 1.46835 * 120.41373 * 7.91501 * 7 5 3 9 9 C 1.53365 * 109.25460 * 232.25141 * 8 7 5 10 10 C 1.52791 * 108.81339 * 306.16447 * 9 8 7 11 11 H 1.09001 * 109.34938 * 302.84105 * 10 9 8 12 12 O 1.42603 * 110.73285 * 182.29104 * 10 9 8 13 13 C 1.43145 * 113.63293 * 176.62449 * 12 10 9 14 14 C 1.53189 * 109.74060 * 61.68946 * 13 12 10 15 15 N 1.47352 * 108.80096 * 308.78479 * 14 13 12 16 16 C 1.36929 * 121.31058 * 230.51000 * 15 14 13 17 17 H 1.08003 * 120.00038 * 157.99721 * 16 15 14 18 18 C 1.38815 * 120.00342 * 338.00704 * 16 15 14 19 19 N 1.31621 * 119.99471 * 340.40349 * 18 16 15 20 20 Si 1.86790 * 120.00547 * 160.40472 * 18 16 15 21 21 H 1.48495 * 109.47436 * 89.99730 * 20 18 16 22 22 H 1.48503 * 109.47580 * 209.99985 * 20 18 16 23 23 H 1.48498 * 109.47166 * 329.99896 * 20 18 16 24 24 C 1.46871 * 117.38540 * 50.24744 * 15 14 13 25 25 H 1.09004 * 109.65758 * 67.64380 * 24 15 14 26 26 C 1.48212 * 120.00742 * 188.07353 * 7 5 3 27 27 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47139 * 299.99941 * 1 2 3 29 29 H 1.08997 * 109.47640 * 60.00059 * 1 2 3 30 30 H 1.07997 * 120.00619 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46627 * 294.31765 * 4 3 2 32 32 H 1.09001 * 109.47238 * 54.30464 * 4 3 2 33 33 H 1.08993 * 109.47494 * 174.31043 * 4 3 2 34 34 H 1.09000 * 109.51244 * 112.31099 * 8 7 5 35 35 H 1.09005 * 109.54168 * 352.20486 * 8 7 5 36 36 H 1.08996 * 109.58060 * 186.37069 * 9 8 7 37 37 H 1.09000 * 109.69184 * 66.02887 * 9 8 7 38 38 H 1.09000 * 109.42461 * 181.76696 * 13 12 10 39 39 H 1.09001 * 109.42620 * 301.65823 * 13 12 10 40 40 H 1.09006 * 109.57953 * 188.99628 * 14 13 12 41 41 H 1.08992 * 109.58766 * 68.58930 * 14 13 12 42 42 H 0.97001 * 120.00057 * 180.02562 * 19 18 16 43 43 H 1.09007 * 110.13244 * 7.66524 * 26 7 5 44 44 H 1.09002 * 109.87150 * 246.64817 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2514 0.4488 0.7833 7 7 4.3164 1.9311 -0.8698 8 6 3.6015 2.9093 -1.6993 9 6 3.9854 2.7022 -3.1697 10 6 5.5078 2.7453 -3.2922 11 1 5.8749 3.6941 -2.9008 12 8 5.9087 2.6093 -4.6540 13 6 7.3226 2.7181 -4.8495 14 6 8.0379 1.5977 -4.0882 15 7 7.5610 1.5912 -2.6940 16 6 8.4375 1.5892 -1.6420 17 1 8.1162 1.9351 -0.6707 18 6 9.7393 1.1427 -1.8241 19 7 10.0347 0.3783 -2.8540 20 14 11.0715 1.6265 -0.6074 21 1 11.1407 0.6161 0.4786 22 1 12.3801 1.6923 -1.3064 23 1 10.7528 2.9558 -0.0272 24 6 6.1084 1.5930 -2.4769 25 1 5.6861 0.6463 -2.8139 26 6 5.7875 1.8013 -0.9956 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 2.0471 -0.9352 0.0004 31 1 0.8700 2.5601 -0.9357 32 1 0.7178 2.4716 0.8355 33 1 2.1223 3.2828 0.1024 34 1 3.8753 3.9180 -1.3902 35 1 2.5267 2.7715 -1.5809 36 1 3.5476 3.4946 -3.7766 37 1 3.6187 1.7346 -3.5122 38 1 7.5489 2.6358 -5.9126 39 1 7.6665 3.6839 -4.4793 40 1 9.1136 1.7733 -4.1054 41 1 7.8149 0.6384 -4.5551 42 1 10.9442 0.0659 -2.9811 43 1 6.1393 0.9457 -0.4191 44 1 6.2715 2.7104 -0.6386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074208420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:14 Heat of formation + Delta-G solvation = -48.423481 kcal Electronic energy + Delta-G solvation = -25246.172460 eV Core-core repulsion = 21778.179310 eV Total energy + Delta-G solvation = -3467.993150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61729 -40.19368 -37.46654 -36.77251 -36.43622 -33.54051 -32.98038 -31.62589 -30.21203 -28.81837 -27.62390 -26.40438 -25.33634 -23.88310 -23.06496 -21.70032 -21.10456 -19.30899 -18.70590 -18.00687 -17.25598 -17.12498 -16.85860 -16.55830 -16.23195 -15.67216 -15.60242 -15.33222 -14.76547 -14.70720 -14.69243 -14.32318 -13.97341 -13.70440 -13.59268 -13.34857 -13.17959 -13.02808 -12.93861 -12.86569 -12.52873 -12.38102 -12.24722 -12.20609 -12.04947 -11.91510 -11.66542 -11.28582 -10.86158 -10.82896 -10.52955 -10.00544 -9.68441 -8.84384 -7.95183 -5.37864 0.59866 1.42505 1.43537 1.53338 1.70253 2.04016 2.44921 2.81016 3.18217 3.40965 3.49995 3.80244 3.89014 4.03134 4.04107 4.14092 4.20200 4.33173 4.36717 4.43946 4.47968 4.52795 4.58502 4.63975 4.74682 4.79272 4.82735 4.87978 4.96407 4.97943 5.05603 5.09138 5.11442 5.19461 5.27604 5.37715 5.49577 5.52614 5.58377 5.71637 6.19821 6.30507 6.38231 7.00153 7.06414 7.69222 8.21900 9.11190 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.005029 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.382326 B = 5566.412881 C = 6567.898558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.191 4.191 4 C -0.112 4.112 5 C 0.542 3.458 6 O -0.599 6.599 7 N -0.606 5.606 8 C 0.096 3.904 9 C -0.116 4.116 10 C 0.081 3.919 11 H 0.058 0.942 12 O -0.391 6.391 13 C 0.052 3.948 14 C 0.141 3.859 15 N -0.607 5.607 16 C -0.263 4.263 17 H 0.075 0.925 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.291 1.291 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.135 3.865 25 H 0.003 0.997 26 C 0.139 3.861 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.078 0.922 41 H -0.005 1.005 42 H 0.252 0.748 43 H 0.057 0.943 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.016 8.617 0.185 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.112 4.112 3 C -0.194 4.194 4 C -0.167 4.167 5 C 0.333 3.667 6 O -0.481 6.481 7 N -0.339 5.339 8 C -0.024 4.024 9 C -0.155 4.155 10 C 0.022 3.978 11 H 0.076 0.924 12 O -0.310 6.310 13 C -0.026 4.026 14 C 0.016 3.984 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.093 0.907 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.218 1.218 22 H -0.213 1.213 23 H -0.192 1.192 24 C 0.027 3.973 25 H 0.020 0.980 26 C 0.016 3.984 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.662 8.191 0.401 22.230 hybrid contribution 2.127 -0.793 0.688 2.372 sum -18.535 7.398 1.089 19.986 Atomic orbital electron populations 1.20963 0.88552 1.03953 1.03992 1.23567 0.98608 0.95917 0.93111 1.21427 0.89814 0.99364 1.08760 1.21061 0.99830 0.91252 1.04599 1.19479 0.89742 0.78057 0.79403 1.90773 1.71597 1.44493 1.41215 1.48556 1.06943 1.38602 1.39756 1.22568 0.99879 0.92037 0.87954 1.21915 0.91694 1.04408 0.97448 1.22514 0.96296 0.96592 0.82399 0.92438 1.87758 1.23316 1.93919 1.26013 1.23173 0.80474 0.97997 1.00912 1.21423 0.99485 0.94379 0.83149 1.44399 0.99841 1.86434 1.02515 1.19484 0.92163 1.35854 0.91735 0.90721 1.25687 1.00824 0.97870 1.00101 1.70202 1.19210 1.35665 1.32984 0.85305 0.78736 0.78420 0.78209 1.21769 1.21261 1.19179 1.21426 0.85435 0.96108 0.94288 0.97967 1.21479 0.79534 1.01686 0.95665 0.90989 0.89360 0.88689 0.89192 0.87477 0.89287 0.91200 0.89009 0.84253 0.86480 0.91648 0.87191 0.93160 0.90367 0.98725 0.93902 0.92481 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.15 71.24 0.65 -0.65 16 2 C -0.09 -1.93 9.87 24.52 0.24 -1.69 16 3 C -0.19 -4.34 5.23 -18.70 -0.10 -4.44 16 4 C -0.11 -1.37 7.12 71.24 0.51 -0.86 16 5 C 0.54 18.67 7.15 86.57 0.62 19.29 16 6 O -0.60 -27.15 16.43 -4.06 -0.07 -27.21 16 7 N -0.61 -19.68 3.00 -820.13 -2.46 -22.14 16 8 C 0.10 2.04 5.18 86.44 0.45 2.48 16 9 C -0.12 -2.84 5.81 30.65 0.18 -2.66 16 10 C 0.08 2.86 2.50 30.66 0.08 2.93 16 11 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 12 O -0.39 -14.83 10.47 -148.98 -1.56 -16.39 16 13 C 0.05 2.02 6.96 72.05 0.50 2.52 16 14 C 0.14 7.05 5.51 86.28 0.48 7.53 16 15 N -0.61 -31.73 3.06 -673.91 -2.06 -33.79 16 16 C -0.26 -14.79 8.98 84.04 0.75 -14.03 16 17 H 0.08 4.11 6.16 -2.91 -0.02 4.09 16 18 C -0.05 -2.83 4.94 84.86 0.42 -2.41 16 19 N -0.93 -56.20 11.02 21.65 0.24 -55.97 16 20 Si 0.97 45.91 29.60 68.60 2.03 47.94 16 21 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.13 5.99 2.98 45.05 0.13 6.13 16 25 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 26 C 0.14 5.84 4.50 86.05 0.39 6.23 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.76 7.70 -2.38 -0.02 0.74 16 29 H 0.09 0.69 8.06 -2.39 -0.02 0.67 16 30 H 0.09 2.34 8.05 -2.91 -0.02 2.32 16 31 H 0.11 0.68 7.44 -2.39 -0.02 0.66 16 32 H 0.09 0.83 7.60 -2.39 -0.02 0.81 16 33 H 0.07 0.88 6.56 -2.39 -0.02 0.86 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.14 1.97 3.71 -2.38 -0.01 1.96 16 36 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 4.28 5.92 -2.38 -0.01 4.26 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.06 2.87 6.86 -2.38 -0.02 2.86 16 44 H 0.07 3.02 7.38 -2.39 -0.02 3.00 16 Total: -1.00 -77.51 337.80 2.40 -75.11 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.99 Total: 12.08 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 5.30 Total: 20.37 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -4.29 Total: -111.90 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.63 Total: -43.60 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.51 2.40 -75.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.685 kcal (2) G-P(sol) polarization free energy of solvation -77.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds