Wall clock time and date at job start Tue Mar 31 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32991 * 119.99982 * 2 1 4 4 C 1.50703 * 119.99982 * 180.02562 * 3 2 1 5 5 C 1.47100 * 119.99900 * 359.97438 * 3 2 1 6 6 O 1.21617 * 120.00009 * 258.06289 * 5 3 2 7 7 N 1.34777 * 120.00059 * 78.06676 * 5 3 2 8 8 C 1.46991 * 120.72137 * 354.63629 * 7 5 3 9 9 C 1.53158 * 108.44095 * 125.46859 * 8 7 5 10 10 C 1.52505 * 109.79876 * 54.52530 * 9 8 7 11 11 H 1.09000 * 108.93076 * 181.01514 * 10 9 8 12 12 O 1.42697 * 110.62074 * 61.32056 * 10 9 8 13 13 C 1.43073 * 113.87321 * 174.64990 * 12 10 9 14 14 C 1.53221 * 109.45344 * 61.64161 * 13 12 10 15 15 N 1.47174 * 108.69654 * 308.41982 * 14 13 12 16 16 C 1.36939 * 121.21742 * 230.95296 * 15 14 13 17 17 H 1.08005 * 119.99674 * 146.27534 * 16 15 14 18 18 C 1.38807 * 120.00229 * 326.27445 * 16 15 14 19 19 N 1.31621 * 119.99808 * 355.38178 * 18 16 15 20 20 Si 1.86801 * 120.00238 * 175.38243 * 18 16 15 21 21 H 1.48496 * 109.47122 * 89.99659 * 20 18 16 22 22 H 1.48500 * 109.47296 * 210.00196 * 20 18 16 23 23 H 1.48503 * 109.46859 * 330.00059 * 20 18 16 24 24 C 1.47591 * 117.55838 * 50.93455 * 15 14 13 25 25 H 1.09005 * 111.16021 * 187.22157 * 24 15 14 26 26 C 1.46790 * 120.72365 * 174.65762 * 7 5 3 27 27 H 1.08996 * 109.46554 * 60.00840 * 1 2 3 28 28 H 1.09002 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47360 * 300.00502 * 1 2 3 30 30 H 1.08004 * 120.00034 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46932 * 275.07746 * 4 3 2 32 32 H 1.08994 * 109.47223 * 35.07540 * 4 3 2 33 33 H 1.08997 * 109.46853 * 155.08334 * 4 3 2 34 34 H 1.08999 * 109.64087 * 5.78521 * 8 7 5 35 35 H 1.09003 * 109.63945 * 245.15107 * 8 7 5 36 36 H 1.08996 * 109.41677 * 294.42732 * 9 8 7 37 37 H 1.08996 * 109.41308 * 174.63057 * 9 8 7 38 38 H 1.09001 * 109.47189 * 181.63863 * 13 12 10 39 39 H 1.08995 * 109.47714 * 301.64477 * 13 12 10 40 40 H 1.09006 * 109.60280 * 68.17789 * 14 13 12 41 41 H 1.09003 * 109.60487 * 188.65093 * 14 13 12 42 42 H 0.97008 * 119.99623 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.52055 * 354.18197 * 26 7 5 44 44 H 1.08999 * 109.52002 * 114.30833 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4256 -0.0006 6 8 1.3215 3.0610 -1.0312 7 7 0.8900 2.8888 1.1411 8 6 0.9174 2.0807 2.3686 9 6 1.5556 2.9145 3.4835 10 6 0.8172 4.2415 3.6234 11 1 1.2935 4.8304 4.4072 12 8 -0.5484 4.0221 3.9745 13 6 -1.2776 5.2236 4.2423 14 6 -1.3017 6.0971 2.9837 15 7 0.0770 6.2573 2.4942 16 6 0.5919 7.4953 2.2158 17 1 1.6389 7.6960 2.3888 18 6 -0.2318 8.4923 1.7115 19 7 -1.4856 8.2227 1.4152 20 14 0.4391 10.2164 1.4532 21 1 0.9986 10.3296 0.0823 22 1 -0.6562 11.2045 1.6240 23 1 1.5083 10.4856 2.4479 24 6 0.8843 5.0349 2.3147 25 1 1.9189 5.2786 2.0730 26 6 0.2542 4.2111 1.1856 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.0471 -0.9353 0.0004 31 1 4.0427 1.0606 1.0230 32 1 4.0421 0.3109 -0.5914 33 1 4.0421 2.0838 -0.4335 34 1 1.5078 1.1799 2.2011 35 1 -0.0997 1.8087 2.6509 36 1 2.6008 3.1054 3.2402 37 1 1.4978 2.3667 4.4240 38 1 -2.2986 4.9725 4.5300 39 1 -0.7951 5.7685 5.0536 40 1 -1.9085 5.6162 2.2163 41 1 -1.7201 7.0743 3.2247 42 1 -2.0613 8.9196 1.0630 43 1 0.4066 4.7208 0.2342 44 1 -0.8138 4.0957 1.3702 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074208421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:18 Heat of formation + Delta-G solvation = -36.971880 kcal Electronic energy + Delta-G solvation = -25624.809784 eV Core-core repulsion = 22157.313213 eV Total energy + Delta-G solvation = -3467.496571 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22965 -38.66676 -35.67651 -35.27857 -34.58573 -31.61102 -31.48554 -30.25797 -29.48597 -27.45608 -25.53879 -24.34811 -23.87473 -22.84779 -21.82573 -21.11703 -18.66532 -17.89142 -16.92193 -16.35359 -15.59543 -15.42720 -15.33804 -15.09649 -14.61525 -14.44975 -13.97893 -13.78908 -13.52106 -13.27515 -13.14340 -12.91305 -12.70201 -12.37502 -12.29239 -12.24715 -11.95827 -11.71481 -11.57017 -11.28833 -11.03386 -10.92640 -10.79573 -10.58180 -10.24437 -10.16170 -10.08852 -9.61992 -9.51676 -8.96162 -8.87152 -8.59959 -8.21413 -6.65439 -5.86883 -3.40109 1.76102 2.91012 3.33456 3.39254 3.41002 3.43347 4.33290 4.40422 4.62423 4.84862 5.01636 5.11602 5.18112 5.31201 5.37078 5.38168 5.47179 5.49881 5.61080 5.62877 5.68201 5.79247 5.80544 5.85153 5.95764 6.03991 6.06992 6.10589 6.17337 6.31003 6.34452 6.40525 6.45363 6.55063 6.71444 6.78208 6.99884 7.11248 7.52301 7.70835 7.79153 7.90360 8.35419 8.49747 9.10263 9.68303 10.29644 11.20137 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.005179 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.563999 B = 5405.071094 C = 6055.339632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C -0.158 4.158 4 C -0.103 4.103 5 C 0.552 3.448 6 O -0.541 6.541 7 N -0.600 5.600 8 C 0.113 3.887 9 C -0.122 4.122 10 C 0.080 3.920 11 H 0.051 0.949 12 O -0.387 6.387 13 C 0.038 3.962 14 C 0.140 3.860 15 N -0.584 5.584 16 C -0.259 4.259 17 H 0.066 0.934 18 C 0.012 3.988 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.135 3.865 25 H 0.073 0.927 26 C 0.106 3.894 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.029 0.971 41 H 0.095 0.905 42 H 0.256 0.744 43 H 0.087 0.913 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -15.804 4.002 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C -0.161 4.161 4 C -0.160 4.160 5 C 0.339 3.661 6 O -0.419 6.419 7 N -0.333 5.333 8 C -0.010 4.010 9 C -0.161 4.161 10 C 0.021 3.979 11 H 0.069 0.931 12 O -0.307 6.307 13 C -0.040 4.040 14 C 0.015 3.985 15 N -0.306 5.306 16 C -0.388 4.388 17 H 0.083 0.917 18 C -0.187 4.187 19 N -0.544 5.544 20 Si 0.736 3.264 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.026 3.974 25 H 0.091 0.909 26 C -0.017 4.017 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.947 -15.449 3.403 16.575 hybrid contribution 0.292 1.212 -0.194 1.262 sum 5.239 -14.237 3.210 15.507 Atomic orbital electron populations 1.21021 0.92726 1.02589 1.03097 1.23264 0.96336 0.96640 0.98311 1.21565 0.96966 0.93340 1.04263 1.20653 0.89927 1.03204 1.02262 1.18519 0.78673 0.85333 0.83534 1.90812 1.60476 1.59003 1.31615 1.48299 1.56785 1.18834 1.09334 1.21659 1.01650 0.93595 0.84098 1.21797 0.99262 0.96116 0.98930 1.22216 0.83255 0.94930 0.97521 0.93125 1.87711 1.22188 1.31303 1.89473 1.23357 0.94849 0.86477 0.99286 1.21463 0.86500 0.99304 0.91269 1.44167 1.10859 1.00391 1.75183 1.19116 0.95019 0.87210 1.37469 0.91678 1.25293 0.96481 0.99427 0.97532 1.69932 1.05490 1.32711 1.46271 0.86236 0.78047 0.83786 0.78331 1.21114 1.21500 1.20360 1.21608 0.96288 0.87773 0.91699 0.90850 1.22326 0.97257 0.80428 1.01734 0.91227 0.91629 0.90820 0.86034 0.90998 0.91231 0.91342 0.90127 0.90739 0.90510 0.90512 0.90213 0.94193 0.95327 0.88672 0.93340 0.89428 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.10 36.01 0.33 -1.18 16 2 C -0.13 -1.35 9.07 -36.13 -0.33 -1.68 16 3 C -0.16 -2.05 4.19 -102.85 -0.43 -2.48 16 4 C -0.10 -1.08 10.02 36.01 0.36 -0.72 16 5 C 0.55 9.66 5.92 -12.67 -0.08 9.58 16 6 O -0.54 -11.99 16.54 5.26 0.09 -11.90 16 7 N -0.60 -10.15 2.89 -174.17 -0.50 -10.65 16 8 C 0.11 1.51 4.59 -3.69 -0.02 1.49 16 9 C -0.12 -1.64 5.82 -26.90 -0.16 -1.80 16 10 C 0.08 1.41 2.72 -26.89 -0.07 1.34 16 11 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 12 O -0.39 -7.16 9.59 -35.23 -0.34 -7.50 16 13 C 0.04 0.73 6.97 37.27 0.26 0.99 16 14 C 0.14 3.26 4.84 -3.56 -0.02 3.24 16 15 N -0.58 -14.29 2.70 -163.87 -0.44 -14.73 16 16 C -0.26 -6.98 9.68 -15.06 -0.15 -7.13 16 17 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 18 C 0.01 0.34 5.18 -17.43 -0.09 0.25 16 19 N -0.90 -25.62 11.00 55.49 0.61 -25.01 16 20 Si 0.91 21.54 29.56 -169.99 -5.02 16.51 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.13 2.82 3.00 -67.08 -0.20 2.62 16 25 H 0.07 1.58 8.03 -51.93 -0.42 1.16 16 26 C 0.11 2.21 5.61 -3.72 -0.02 2.19 16 27 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.86 6.12 -51.93 -0.32 0.54 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.08 0.88 5.76 -51.93 -0.30 0.58 16 35 H 0.07 1.02 7.63 -51.93 -0.40 0.62 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 41 H 0.10 2.44 6.31 -51.93 -0.33 2.12 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.09 2.14 7.03 -51.93 -0.36 1.77 16 44 H 0.07 1.51 6.57 -51.93 -0.34 1.17 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -31.30 340.39 -8.11 -39.41 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.02 Total: 2.04 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.61 Total: 6.71 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.33 Total: -50.40 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.25 Total: -19.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.30 -8.11 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.439 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds