Wall clock time and date at job start Tue Mar 31 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32991 * 119.99982 * 2 1 4 4 C 1.50703 * 119.99982 * 180.02562 * 3 2 1 5 5 C 1.47100 * 119.99900 * 359.97438 * 3 2 1 6 6 O 1.21617 * 120.00009 * 258.06289 * 5 3 2 7 7 N 1.34777 * 120.00059 * 78.06676 * 5 3 2 8 8 C 1.46991 * 120.72137 * 354.63629 * 7 5 3 9 9 C 1.53158 * 108.44095 * 125.46859 * 8 7 5 10 10 C 1.52505 * 109.79876 * 54.52530 * 9 8 7 11 11 H 1.09000 * 108.93076 * 181.01514 * 10 9 8 12 12 O 1.42697 * 110.62074 * 61.32056 * 10 9 8 13 13 C 1.43073 * 113.87321 * 174.64990 * 12 10 9 14 14 C 1.53221 * 109.45344 * 61.64161 * 13 12 10 15 15 N 1.47174 * 108.69654 * 308.41982 * 14 13 12 16 16 C 1.36939 * 121.21742 * 230.95296 * 15 14 13 17 17 H 1.08005 * 119.99674 * 146.27534 * 16 15 14 18 18 C 1.38807 * 120.00229 * 326.27445 * 16 15 14 19 19 N 1.31621 * 119.99808 * 355.38178 * 18 16 15 20 20 Si 1.86801 * 120.00238 * 175.38243 * 18 16 15 21 21 H 1.48496 * 109.47122 * 89.99659 * 20 18 16 22 22 H 1.48500 * 109.47296 * 210.00196 * 20 18 16 23 23 H 1.48503 * 109.46859 * 330.00059 * 20 18 16 24 24 C 1.47591 * 117.55838 * 50.93455 * 15 14 13 25 25 H 1.09005 * 111.16021 * 187.22157 * 24 15 14 26 26 C 1.46790 * 120.72365 * 174.65762 * 7 5 3 27 27 H 1.08996 * 109.46554 * 60.00840 * 1 2 3 28 28 H 1.09002 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47360 * 300.00502 * 1 2 3 30 30 H 1.08004 * 120.00034 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46932 * 275.07746 * 4 3 2 32 32 H 1.08994 * 109.47223 * 35.07540 * 4 3 2 33 33 H 1.08997 * 109.46853 * 155.08334 * 4 3 2 34 34 H 1.08999 * 109.64087 * 5.78521 * 8 7 5 35 35 H 1.09003 * 109.63945 * 245.15107 * 8 7 5 36 36 H 1.08996 * 109.41677 * 294.42732 * 9 8 7 37 37 H 1.08996 * 109.41308 * 174.63057 * 9 8 7 38 38 H 1.09001 * 109.47189 * 181.63863 * 13 12 10 39 39 H 1.08995 * 109.47714 * 301.64477 * 13 12 10 40 40 H 1.09006 * 109.60280 * 68.17789 * 14 13 12 41 41 H 1.09003 * 109.60487 * 188.65093 * 14 13 12 42 42 H 0.97008 * 119.99623 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.52055 * 354.18197 * 26 7 5 44 44 H 1.08999 * 109.52002 * 114.30833 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4256 -0.0006 6 8 1.3215 3.0610 -1.0312 7 7 0.8900 2.8888 1.1411 8 6 0.9174 2.0807 2.3686 9 6 1.5556 2.9145 3.4835 10 6 0.8172 4.2415 3.6234 11 1 1.2935 4.8304 4.4072 12 8 -0.5484 4.0221 3.9745 13 6 -1.2776 5.2236 4.2423 14 6 -1.3017 6.0971 2.9837 15 7 0.0770 6.2573 2.4942 16 6 0.5919 7.4953 2.2158 17 1 1.6389 7.6960 2.3888 18 6 -0.2318 8.4923 1.7115 19 7 -1.4856 8.2227 1.4152 20 14 0.4391 10.2164 1.4532 21 1 0.9986 10.3296 0.0823 22 1 -0.6562 11.2045 1.6240 23 1 1.5083 10.4856 2.4479 24 6 0.8843 5.0349 2.3147 25 1 1.9189 5.2786 2.0730 26 6 0.2542 4.2111 1.1856 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 2.0471 -0.9353 0.0004 31 1 4.0427 1.0606 1.0230 32 1 4.0421 0.3109 -0.5914 33 1 4.0421 2.0838 -0.4335 34 1 1.5078 1.1799 2.2011 35 1 -0.0997 1.8087 2.6509 36 1 2.6008 3.1054 3.2402 37 1 1.4978 2.3667 4.4240 38 1 -2.2986 4.9725 4.5300 39 1 -0.7951 5.7685 5.0536 40 1 -1.9085 5.6162 2.2163 41 1 -1.7201 7.0743 3.2247 42 1 -2.0613 8.9196 1.0630 43 1 0.4066 4.7208 0.2342 44 1 -0.8138 4.0957 1.3702 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074208421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:18 Heat of formation + Delta-G solvation = -57.657685 kcal Electronic energy + Delta-G solvation = -25625.706788 eV Core-core repulsion = 22157.313213 eV Total energy + Delta-G solvation = -3468.393575 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65426 -40.17555 -37.15629 -36.49276 -36.26340 -33.43797 -33.00647 -31.10426 -31.06415 -29.29591 -26.87798 -25.64972 -25.35610 -24.47206 -23.14565 -22.60584 -20.23450 -19.26620 -18.81491 -17.71496 -17.12685 -17.02064 -16.70519 -16.59737 -16.17890 -15.84871 -15.52683 -15.07623 -14.85015 -14.68594 -14.50164 -14.30965 -13.90129 -13.78819 -13.62518 -13.43647 -13.26515 -13.00730 -12.89438 -12.67044 -12.63876 -12.45425 -12.41393 -12.25616 -12.11074 -11.92411 -11.69711 -11.23254 -10.89289 -10.72356 -10.56779 -9.82491 -9.72335 -8.63473 -7.95136 -5.52237 0.82830 1.41088 1.43458 1.51705 1.56063 2.05800 2.43220 2.89071 3.21956 3.44264 3.53161 3.84323 3.97573 4.00813 4.13065 4.18157 4.25440 4.34559 4.43696 4.50885 4.56033 4.58354 4.61037 4.67728 4.79657 4.82160 4.84221 4.86360 4.89945 4.96694 5.01420 5.06006 5.17820 5.22162 5.28586 5.45141 5.50887 5.57019 5.59059 5.68603 6.27957 6.35920 6.44741 7.03901 7.11983 7.67317 8.25259 9.08955 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.005179 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.563999 B = 5405.071094 C = 6055.339632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.183 4.183 4 C -0.098 4.098 5 C 0.546 3.454 6 O -0.603 6.603 7 N -0.597 5.597 8 C 0.112 3.888 9 C -0.115 4.115 10 C 0.085 3.915 11 H 0.051 0.949 12 O -0.382 6.382 13 C 0.052 3.948 14 C 0.147 3.853 15 N -0.602 5.602 16 C -0.271 4.271 17 H 0.065 0.935 18 C -0.040 4.040 19 N -0.932 5.932 20 Si 0.970 3.030 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.133 3.867 25 H 0.062 0.938 26 C 0.125 3.875 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.167 0.833 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.047 0.953 40 H -0.001 1.001 41 H 0.066 0.934 42 H 0.252 0.748 43 H 0.037 0.963 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -19.017 6.015 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.186 4.186 4 C -0.155 4.155 5 C 0.337 3.663 6 O -0.485 6.485 7 N -0.329 5.329 8 C -0.010 4.010 9 C -0.153 4.153 10 C 0.026 3.974 11 H 0.069 0.931 12 O -0.301 6.301 13 C -0.026 4.026 14 C 0.022 3.978 15 N -0.325 5.325 16 C -0.401 4.401 17 H 0.082 0.918 18 C -0.236 4.236 19 N -0.576 5.576 20 Si 0.798 3.202 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.189 1.189 24 C 0.025 3.975 25 H 0.080 0.920 26 C 0.000 4.000 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.184 0.816 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.711 -18.712 5.466 20.617 hybrid contribution -0.293 2.150 -0.874 2.339 sum 6.418 -16.562 4.592 18.346 Atomic orbital electron populations 1.21103 0.93449 1.04131 1.01404 1.23636 0.95938 0.97322 0.94480 1.21509 0.98088 0.91146 1.07867 1.20692 0.87779 1.02943 1.04061 1.19463 0.77900 0.86555 0.82409 1.90775 1.62598 1.61296 1.33845 1.48339 1.55998 1.17481 1.11039 1.21955 1.02581 0.94236 0.82182 1.21852 0.99137 0.93703 1.00603 1.22266 0.83283 0.97097 0.94766 0.93110 1.87729 1.22651 1.30595 1.89150 1.23176 0.96744 0.86054 0.96658 1.21276 0.85549 0.98467 0.92497 1.44392 1.11439 1.00963 1.75725 1.19421 0.95087 0.88610 1.36951 0.91764 1.26034 0.96758 1.03089 0.97748 1.70103 1.06551 1.33502 1.47445 0.85241 0.77609 0.79438 0.77953 1.21646 1.21375 1.18948 1.21741 0.94914 0.87007 0.93852 0.91974 1.21726 0.96419 0.82705 0.99167 0.94073 0.88457 0.91482 0.81591 0.88623 0.88651 0.93946 0.86424 0.90656 0.88987 0.86816 0.87423 0.93517 0.98283 0.91530 0.93832 0.94470 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.10 71.24 0.65 -2.14 16 2 C -0.10 -1.64 9.07 24.52 0.22 -1.41 16 3 C -0.18 -4.31 4.19 -18.70 -0.08 -4.39 16 4 C -0.10 -1.73 10.02 71.24 0.71 -1.02 16 5 C 0.55 19.40 5.92 86.57 0.51 19.91 16 6 O -0.60 -28.47 16.54 -4.09 -0.07 -28.54 16 7 N -0.60 -20.29 2.89 -823.19 -2.38 -22.67 16 8 C 0.11 2.65 4.59 86.34 0.40 3.04 16 9 C -0.11 -2.64 5.82 30.48 0.18 -2.47 16 10 C 0.09 2.86 2.72 30.49 0.08 2.95 16 11 H 0.05 1.74 8.12 -2.39 -0.02 1.72 16 12 O -0.38 -13.47 9.59 -148.98 -1.43 -14.90 16 13 C 0.05 1.93 6.97 72.06 0.50 2.43 16 14 C 0.15 7.17 4.84 86.32 0.42 7.59 16 15 N -0.60 -30.77 2.70 -672.38 -1.81 -32.58 16 16 C -0.27 -15.18 9.68 84.03 0.81 -14.37 16 17 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 18 C -0.04 -2.26 5.18 84.86 0.44 -1.82 16 19 N -0.93 -55.69 11.00 21.65 0.24 -55.45 16 20 Si 0.97 45.65 29.56 68.60 2.03 47.67 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.13 5.71 3.00 44.95 0.13 5.84 16 25 H 0.06 2.77 8.03 -2.38 -0.02 2.75 16 26 C 0.13 5.53 5.61 86.43 0.48 6.01 16 27 H 0.04 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.40 6.12 -2.39 -0.01 1.39 16 30 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.19 8.10 -2.39 -0.02 1.18 16 33 H 0.04 0.96 8.08 -2.39 -0.02 0.95 16 34 H 0.12 1.99 5.76 -2.39 -0.01 1.98 16 35 H 0.08 1.83 7.63 -2.39 -0.02 1.81 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.00 -0.05 7.17 -2.38 -0.02 -0.07 16 41 H 0.07 3.60 6.31 -2.39 -0.02 3.58 16 42 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 43 H 0.04 1.98 7.03 -2.39 -0.02 1.97 16 44 H 0.05 2.28 6.57 -2.39 -0.02 2.27 16 Total: -1.00 -75.38 340.39 3.03 -72.36 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.98 Total: 13.95 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 5.47 Total: 20.15 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -3.95 Total: -110.69 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -1.50 Total: -43.44 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.38 3.03 -72.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.699 kcal (2) G-P(sol) polarization free energy of solvation -75.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds