Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32994 * 120.00201 * 2 1 4 4 C 1.50701 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.47106 * 119.99987 * 180.02562 * 3 2 1 6 6 O 1.21611 * 119.99758 * 255.13612 * 5 3 2 7 7 N 1.34771 * 119.99759 * 75.13957 * 5 3 2 8 8 C 1.46986 * 120.72804 * 355.00800 * 7 5 3 9 9 C 1.53149 * 108.44075 * 125.42746 * 8 7 5 10 10 C 1.52506 * 109.80231 * 54.52999 * 9 8 7 11 11 H 1.09006 * 108.93057 * 181.01667 * 10 9 8 12 12 O 1.42687 * 110.62387 * 61.31830 * 10 9 8 13 13 C 1.43068 * 113.87492 * 174.65247 * 12 10 9 14 14 C 1.53230 * 109.45350 * 61.64317 * 13 12 10 15 15 N 1.47168 * 108.69239 * 308.41899 * 14 13 12 16 16 C 1.36939 * 121.22092 * 230.95130 * 15 14 13 17 17 H 1.08000 * 120.00463 * 155.33383 * 16 15 14 18 18 C 1.38811 * 119.99499 * 335.33942 * 16 15 14 19 19 N 1.31619 * 120.00521 * 334.70144 * 18 16 15 20 20 Si 1.86806 * 119.99880 * 154.70101 * 18 16 15 21 21 H 1.48504 * 109.47215 * 84.99452 * 20 18 16 22 22 H 1.48498 * 109.47323 * 204.99727 * 20 18 16 23 23 H 1.48506 * 109.47125 * 324.99829 * 20 18 16 24 24 C 1.47592 * 117.56009 * 50.93329 * 15 14 13 25 25 H 1.09000 * 111.16259 * 187.21589 * 24 15 14 26 26 C 1.46796 * 120.71954 * 174.98853 * 7 5 3 27 27 H 1.09002 * 109.47062 * 299.99969 * 1 2 3 28 28 H 1.08996 * 109.47401 * 60.00162 * 1 2 3 29 29 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.99863 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46997 * 274.56187 * 4 3 2 32 32 H 1.09001 * 109.46772 * 34.56214 * 4 3 2 33 33 H 1.09003 * 109.46808 * 154.55768 * 4 3 2 34 34 H 1.08995 * 109.63811 * 5.73972 * 8 7 5 35 35 H 1.09001 * 109.64283 * 245.10998 * 8 7 5 36 36 H 1.09003 * 109.41623 * 294.42649 * 9 8 7 37 37 H 1.09005 * 109.41625 * 174.63074 * 9 8 7 38 38 H 1.09004 * 109.47537 * 181.64187 * 13 12 10 39 39 H 1.09002 * 109.47971 * 301.64149 * 13 12 10 40 40 H 1.08993 * 109.59932 * 68.17870 * 14 13 12 41 41 H 1.09000 * 109.59675 * 188.65142 * 14 13 12 42 42 H 0.96998 * 120.00527 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.52381 * 354.22524 * 26 7 5 44 44 H 1.08995 * 109.52267 * 114.34830 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2515 1.4216 1.0172 7 7 4.3164 0.8526 -1.1290 8 6 3.6013 0.4184 -2.3376 9 6 4.0094 1.3325 -3.4966 10 6 5.5279 1.3425 -3.6368 11 1 5.8034 2.0105 -4.4529 12 8 6.0145 0.0328 -3.9266 13 6 7.4195 -0.0174 -4.1920 14 6 8.1898 0.4535 -2.9539 15 7 7.6453 1.7518 -2.5252 16 6 8.4650 2.8247 -2.2968 17 1 8.0752 3.8288 -2.3764 18 6 9.7970 2.6217 -1.9630 19 7 10.1675 1.4972 -1.3881 20 14 11.0639 3.9447 -2.3298 21 1 11.0840 4.9319 -1.2206 22 1 12.4055 3.3221 -2.4628 23 1 10.7091 4.6319 -3.5976 24 6 6.1834 1.8552 -2.3508 25 1 5.8820 2.8846 -2.1572 26 6 5.7801 0.9537 -1.1781 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0470 -0.9354 0.0004 31 1 1.1665 2.7304 -1.0252 32 1 0.5037 2.3485 0.5821 33 1 2.0404 3.2356 0.4410 34 1 2.5263 0.4923 -2.1736 35 1 3.8694 -0.6119 -2.5717 36 1 3.6569 2.3452 -3.3008 37 1 3.5625 0.9668 -4.4212 38 1 7.7077 -1.0409 -4.4318 39 1 7.6537 0.6329 -5.0348 40 1 8.0728 -0.2749 -2.1516 41 1 9.2459 0.5631 -3.2002 42 1 11.0982 1.3555 -1.1545 43 1 6.1470 1.3829 -0.2457 44 1 6.2093 -0.0386 -1.3160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074208422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -35.596072 kcal Electronic energy + Delta-G solvation = -25344.325411 eV Core-core repulsion = 21876.888499 eV Total energy + Delta-G solvation = -3467.436912 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18417 -38.67212 -35.68714 -35.64849 -34.63175 -31.70317 -31.51428 -29.69914 -29.31875 -27.56736 -26.32390 -24.64461 -23.81389 -22.81072 -21.63623 -20.68817 -18.57908 -18.02156 -16.96589 -16.67078 -15.88457 -15.48476 -15.31477 -15.04936 -14.50513 -14.33718 -14.06525 -13.96469 -13.76111 -13.17067 -13.08442 -12.75608 -12.68881 -12.59844 -12.30812 -12.20912 -12.01477 -11.96573 -11.48044 -11.32574 -11.11808 -10.97603 -10.74434 -10.62001 -10.31520 -10.20563 -9.97056 -9.64503 -9.53708 -9.04958 -8.92728 -8.55097 -8.21056 -6.81115 -5.89872 -3.26391 1.73795 2.89414 3.34033 3.37842 3.42036 3.45636 4.30037 4.41870 4.58679 4.87589 5.01075 5.09907 5.15991 5.23534 5.25187 5.32914 5.36873 5.47613 5.55140 5.61709 5.65444 5.73375 5.77006 5.80645 5.84612 6.01448 6.03789 6.07360 6.15216 6.27899 6.29692 6.35951 6.41153 6.53403 6.69217 6.75473 6.96378 7.02072 7.37936 7.72422 7.77469 7.85647 8.25807 8.47917 9.05309 9.69749 10.27173 11.18247 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.004667 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.163763 B = 5997.673964 C = 6623.743094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.132 4.132 3 C -0.153 4.153 4 C -0.106 4.106 5 C 0.548 3.452 6 O -0.541 6.541 7 N -0.600 5.600 8 C 0.113 3.887 9 C -0.122 4.122 10 C 0.080 3.920 11 H 0.052 0.948 12 O -0.387 6.387 13 C 0.041 3.959 14 C 0.138 3.862 15 N -0.582 5.582 16 C -0.263 4.263 17 H 0.069 0.931 18 C 0.009 3.991 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.135 3.865 25 H 0.074 0.926 26 C 0.104 3.896 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.030 0.970 41 H 0.088 0.912 42 H 0.256 0.744 43 H 0.088 0.912 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.612 -3.212 -4.117 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C -0.156 4.156 4 C -0.163 4.163 5 C 0.336 3.664 6 O -0.418 6.418 7 N -0.333 5.333 8 C -0.011 4.011 9 C -0.161 4.161 10 C 0.021 3.979 11 H 0.070 0.930 12 O -0.306 6.306 13 C -0.037 4.037 14 C 0.012 3.988 15 N -0.305 5.305 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.191 4.191 19 N -0.533 5.533 20 Si 0.727 3.273 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.026 3.974 25 H 0.093 0.907 26 C -0.019 4.019 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.161 -3.265 -3.522 17.821 hybrid contribution 1.126 0.719 -0.116 1.341 sum -16.036 -2.547 -3.638 16.639 Atomic orbital electron populations 1.20851 0.92245 1.02518 1.02208 1.23232 0.96383 0.96875 0.98579 1.21500 0.93144 0.97015 1.03962 1.20696 0.99499 0.93812 1.02259 1.18571 0.87504 0.76963 0.83372 1.90814 1.69769 1.49196 1.32043 1.48317 1.08344 1.65564 1.11048 1.21667 0.96418 0.98741 0.84231 1.21794 0.95019 1.00563 0.98699 1.22226 0.92531 0.85296 0.97870 0.92971 1.87715 1.23882 1.28210 1.90778 1.23291 0.81093 1.00340 0.98993 1.21400 0.98280 0.86768 0.92315 1.44328 0.99474 1.09604 1.77054 1.19103 0.90904 0.86311 1.42818 0.91286 1.24950 0.98831 0.97253 0.98043 1.70138 1.16693 1.26474 1.40026 0.86393 0.80953 0.81385 0.78572 1.21163 1.21464 1.20484 1.21587 0.86480 0.97579 0.91706 0.90749 1.22365 0.76466 1.01443 1.01635 0.91212 0.91173 0.91830 0.86848 0.90882 0.91031 0.91370 0.90057 0.90763 0.90484 0.90459 0.90073 0.93984 0.95224 0.89355 0.93436 0.89331 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.97 36.00 0.32 -0.56 16 2 C -0.13 -1.39 8.81 -36.13 -0.32 -1.71 16 3 C -0.15 -1.97 4.30 -102.84 -0.44 -2.41 16 4 C -0.11 -1.10 9.47 36.01 0.34 -0.75 16 5 C 0.55 9.68 7.05 -12.67 -0.09 9.59 16 6 O -0.54 -12.05 16.54 5.27 0.09 -11.96 16 7 N -0.60 -10.26 2.96 -174.17 -0.52 -10.78 16 8 C 0.11 1.51 6.03 -3.70 -0.02 1.48 16 9 C -0.12 -1.63 5.82 -26.91 -0.16 -1.78 16 10 C 0.08 1.41 2.72 -26.89 -0.07 1.33 16 11 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 12 O -0.39 -7.11 9.59 -35.23 -0.34 -7.45 16 13 C 0.04 0.77 6.97 37.28 0.26 1.03 16 14 C 0.14 3.19 5.01 -3.56 -0.02 3.18 16 15 N -0.58 -14.27 2.71 -163.88 -0.44 -14.72 16 16 C -0.26 -7.12 9.66 -15.06 -0.15 -7.26 16 17 H 0.07 1.85 7.95 -52.49 -0.42 1.43 16 18 C 0.01 0.26 4.73 -17.43 -0.08 0.17 16 19 N -0.89 -25.55 11.61 55.49 0.64 -24.90 16 20 Si 0.90 21.40 29.62 -169.99 -5.04 16.37 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 C 0.14 2.82 3.00 -67.08 -0.20 2.62 16 25 H 0.07 1.60 8.03 -51.93 -0.42 1.18 16 26 C 0.10 2.19 5.61 -3.72 -0.02 2.16 16 27 H 0.07 0.48 7.41 -51.93 -0.38 0.10 16 28 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 1.24 8.05 -52.48 -0.42 0.82 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.60 6.68 -51.93 -0.35 0.25 16 33 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.08 0.88 5.65 -51.93 -0.29 0.59 16 35 H 0.07 1.03 7.95 -51.93 -0.41 0.61 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 41 H 0.09 2.24 6.30 -51.93 -0.33 1.91 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.09 2.17 7.03 -51.93 -0.36 1.81 16 44 H 0.07 1.51 6.57 -51.93 -0.34 1.17 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -31.81 342.76 -8.12 -39.92 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.03 Total: 1.28 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.65 Total: 7.08 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.32 Total: -50.40 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.25 Total: -19.42 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.04 Total: 16.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.81 -8.12 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds