Wall clock time and date at job start Tue Mar 31 2020 07:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32994 * 120.00201 * 2 1 4 4 C 1.50701 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.47106 * 119.99987 * 180.02562 * 3 2 1 6 6 O 1.21611 * 119.99758 * 255.13612 * 5 3 2 7 7 N 1.34771 * 119.99759 * 75.13957 * 5 3 2 8 8 C 1.46986 * 120.72804 * 355.00800 * 7 5 3 9 9 C 1.53149 * 108.44075 * 125.42746 * 8 7 5 10 10 C 1.52506 * 109.80231 * 54.52999 * 9 8 7 11 11 H 1.09006 * 108.93057 * 181.01667 * 10 9 8 12 12 O 1.42687 * 110.62387 * 61.31830 * 10 9 8 13 13 C 1.43068 * 113.87492 * 174.65247 * 12 10 9 14 14 C 1.53230 * 109.45350 * 61.64317 * 13 12 10 15 15 N 1.47168 * 108.69239 * 308.41899 * 14 13 12 16 16 C 1.36939 * 121.22092 * 230.95130 * 15 14 13 17 17 H 1.08000 * 120.00463 * 155.33383 * 16 15 14 18 18 C 1.38811 * 119.99499 * 335.33942 * 16 15 14 19 19 N 1.31619 * 120.00521 * 334.70144 * 18 16 15 20 20 Si 1.86806 * 119.99880 * 154.70101 * 18 16 15 21 21 H 1.48504 * 109.47215 * 84.99452 * 20 18 16 22 22 H 1.48498 * 109.47323 * 204.99727 * 20 18 16 23 23 H 1.48506 * 109.47125 * 324.99829 * 20 18 16 24 24 C 1.47592 * 117.56009 * 50.93329 * 15 14 13 25 25 H 1.09000 * 111.16259 * 187.21589 * 24 15 14 26 26 C 1.46796 * 120.71954 * 174.98853 * 7 5 3 27 27 H 1.09002 * 109.47062 * 299.99969 * 1 2 3 28 28 H 1.08996 * 109.47401 * 60.00162 * 1 2 3 29 29 H 1.09001 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.99863 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46997 * 274.56187 * 4 3 2 32 32 H 1.09001 * 109.46772 * 34.56214 * 4 3 2 33 33 H 1.09003 * 109.46808 * 154.55768 * 4 3 2 34 34 H 1.08995 * 109.63811 * 5.73972 * 8 7 5 35 35 H 1.09001 * 109.64283 * 245.10998 * 8 7 5 36 36 H 1.09003 * 109.41623 * 294.42649 * 9 8 7 37 37 H 1.09005 * 109.41625 * 174.63074 * 9 8 7 38 38 H 1.09004 * 109.47537 * 181.64187 * 13 12 10 39 39 H 1.09002 * 109.47971 * 301.64149 * 13 12 10 40 40 H 1.08993 * 109.59932 * 68.17870 * 14 13 12 41 41 H 1.09000 * 109.59675 * 188.65142 * 14 13 12 42 42 H 0.96998 * 120.00527 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.52381 * 354.22524 * 26 7 5 44 44 H 1.08995 * 109.52267 * 114.34830 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2515 1.4216 1.0172 7 7 4.3164 0.8526 -1.1290 8 6 3.6013 0.4184 -2.3376 9 6 4.0094 1.3325 -3.4966 10 6 5.5279 1.3425 -3.6368 11 1 5.8034 2.0105 -4.4529 12 8 6.0145 0.0328 -3.9266 13 6 7.4195 -0.0174 -4.1920 14 6 8.1898 0.4535 -2.9539 15 7 7.6453 1.7518 -2.5252 16 6 8.4650 2.8247 -2.2968 17 1 8.0752 3.8288 -2.3764 18 6 9.7970 2.6217 -1.9630 19 7 10.1675 1.4972 -1.3881 20 14 11.0639 3.9447 -2.3298 21 1 11.0840 4.9319 -1.2206 22 1 12.4055 3.3221 -2.4628 23 1 10.7091 4.6319 -3.5976 24 6 6.1834 1.8552 -2.3508 25 1 5.8820 2.8846 -2.1572 26 6 5.7801 0.9537 -1.1781 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.0470 -0.9354 0.0004 31 1 1.1665 2.7304 -1.0252 32 1 0.5037 2.3485 0.5821 33 1 2.0404 3.2356 0.4410 34 1 2.5263 0.4923 -2.1736 35 1 3.8694 -0.6119 -2.5717 36 1 3.6569 2.3452 -3.3008 37 1 3.5625 0.9668 -4.4212 38 1 7.7077 -1.0409 -4.4318 39 1 7.6537 0.6329 -5.0348 40 1 8.0728 -0.2749 -2.1516 41 1 9.2459 0.5631 -3.2002 42 1 11.0982 1.3555 -1.1545 43 1 6.1470 1.3829 -0.2457 44 1 6.2093 -0.0386 -1.3160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074208422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:21 Heat of formation + Delta-G solvation = -56.646795 kcal Electronic energy + Delta-G solvation = -25345.238238 eV Core-core repulsion = 21876.888499 eV Total energy + Delta-G solvation = -3468.349739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62553 -40.17252 -37.17060 -36.65357 -36.42479 -33.50397 -33.06303 -31.17527 -30.19640 -29.30740 -27.44113 -25.88998 -25.60752 -24.44711 -23.04843 -22.05117 -20.08737 -19.31288 -18.84795 -17.88399 -17.21594 -17.09835 -16.98263 -16.59066 -16.24099 -15.67856 -15.53330 -15.33788 -14.87654 -14.62820 -14.37170 -14.18821 -13.88952 -13.78752 -13.47270 -13.32561 -13.28785 -13.17558 -12.86852 -12.81753 -12.65932 -12.48028 -12.29738 -12.16145 -12.14830 -11.88391 -11.69386 -11.23756 -10.91515 -10.80946 -10.49955 -9.85255 -9.73823 -8.78776 -7.98720 -5.39070 0.81243 1.42357 1.43790 1.52579 1.55227 2.03787 2.45247 2.86670 3.14310 3.41036 3.50008 3.83129 3.98049 4.05892 4.10869 4.16581 4.22544 4.39126 4.41562 4.48999 4.51407 4.53957 4.60212 4.76335 4.79769 4.82278 4.84903 4.89533 4.94969 4.96699 5.02020 5.09620 5.17888 5.19018 5.27061 5.42637 5.46942 5.54635 5.58910 5.72278 6.20882 6.31796 6.42002 6.98710 7.08998 7.67714 8.22672 9.07098 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.004667 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.163763 B = 5997.673964 C = 6623.743094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C -0.179 4.179 4 C -0.100 4.100 5 C 0.542 3.458 6 O -0.603 6.603 7 N -0.598 5.598 8 C 0.111 3.889 9 C -0.114 4.114 10 C 0.086 3.914 11 H 0.054 0.946 12 O -0.382 6.382 13 C 0.054 3.946 14 C 0.144 3.856 15 N -0.600 5.600 16 C -0.275 4.275 17 H 0.067 0.933 18 C -0.041 4.041 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.268 1.268 24 C 0.132 3.868 25 H 0.063 0.937 26 C 0.123 3.877 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.000 1.000 41 H 0.061 0.939 42 H 0.253 0.747 43 H 0.037 0.963 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.138 -3.374 -6.375 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.122 4.122 3 C -0.182 4.182 4 C -0.156 4.156 5 C 0.332 3.668 6 O -0.484 6.484 7 N -0.330 5.330 8 C -0.010 4.010 9 C -0.152 4.152 10 C 0.026 3.974 11 H 0.072 0.928 12 O -0.301 6.301 13 C -0.024 4.024 14 C 0.019 3.981 15 N -0.323 5.323 16 C -0.405 4.405 17 H 0.084 0.916 18 C -0.238 4.238 19 N -0.570 5.570 20 Si 0.792 3.208 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.193 1.193 24 C 0.024 3.976 25 H 0.081 0.919 26 C -0.003 4.003 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.018 0.982 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.746 -3.437 -5.829 21.821 hybrid contribution 2.169 0.706 0.667 2.377 sum -18.577 -2.730 -5.162 19.473 Atomic orbital electron populations 1.20958 0.89028 1.04056 1.03586 1.23531 0.98473 0.95532 0.94685 1.21333 0.89632 0.99247 1.08029 1.20731 0.99421 0.91491 1.03975 1.19541 0.89765 0.75226 0.82255 1.90775 1.71569 1.51828 1.34277 1.48382 1.06600 1.65288 1.12719 1.21963 0.98006 0.98639 0.82392 1.21849 0.91410 1.01752 1.00222 1.22271 0.95168 0.84765 0.95176 0.92844 1.87733 1.23183 1.28700 1.90461 1.23135 0.80851 1.01980 0.96441 1.21267 0.97662 0.85754 0.93435 1.44574 1.00873 1.09436 1.77431 1.19413 0.91773 0.87115 1.42192 0.91573 1.25718 1.00503 0.99448 0.98115 1.70275 1.16653 1.28555 1.41553 0.85354 0.78272 0.78691 0.78478 1.21308 1.21464 1.19273 1.21742 0.84955 0.97123 0.93756 0.91907 1.21778 0.79468 0.99757 0.99264 0.90322 0.88924 0.90372 0.87540 0.88540 0.88586 0.93977 0.86370 0.90740 0.88966 0.86705 0.87189 0.93202 0.98154 0.92047 0.93829 0.94414 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.97 71.24 0.64 -0.52 16 2 C -0.10 -1.85 8.81 24.52 0.22 -1.63 16 3 C -0.18 -4.29 4.30 -18.70 -0.08 -4.37 16 4 C -0.10 -1.80 9.47 71.24 0.67 -1.13 16 5 C 0.54 19.53 7.05 86.57 0.61 20.14 16 6 O -0.60 -28.70 16.54 -4.07 -0.07 -28.77 16 7 N -0.60 -20.65 2.96 -823.22 -2.44 -23.08 16 8 C 0.11 2.66 6.03 86.34 0.52 3.18 16 9 C -0.11 -2.62 5.82 30.48 0.18 -2.44 16 10 C 0.09 2.86 2.72 30.49 0.08 2.94 16 11 H 0.05 1.81 8.12 -2.38 -0.02 1.79 16 12 O -0.38 -13.36 9.59 -148.98 -1.43 -14.79 16 13 C 0.05 1.98 6.97 72.06 0.50 2.48 16 14 C 0.14 6.96 5.01 86.33 0.43 7.40 16 15 N -0.60 -30.68 2.71 -672.40 -1.82 -32.51 16 16 C -0.28 -15.52 9.66 84.03 0.81 -14.71 16 17 H 0.07 3.67 7.95 -2.91 -0.02 3.65 16 18 C -0.04 -2.33 4.73 84.86 0.40 -1.92 16 19 N -0.93 -55.76 11.61 21.65 0.25 -55.50 16 20 Si 0.96 45.30 29.62 68.60 2.03 47.33 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.13 5.69 3.00 44.95 0.13 5.82 16 25 H 0.06 2.80 8.03 -2.39 -0.02 2.79 16 26 C 0.12 5.46 5.61 86.43 0.48 5.94 16 27 H 0.08 0.72 7.41 -2.39 -0.02 0.70 16 28 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 2.06 8.05 -2.91 -0.02 2.04 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.24 6.68 -2.39 -0.02 1.23 16 33 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.12 2.02 5.65 -2.39 -0.01 2.00 16 35 H 0.07 1.83 7.95 -2.39 -0.02 1.81 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.00 0.02 7.17 -2.39 -0.02 0.00 16 41 H 0.06 3.27 6.30 -2.39 -0.02 3.25 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.04 2.03 7.03 -2.39 -0.02 2.01 16 44 H 0.05 2.31 6.57 -2.39 -0.02 2.29 16 Total: -1.00 -76.16 342.76 3.11 -73.05 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.98 Total: 13.08 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 5.61 Total: 21.19 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.01 Total: -111.09 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.50 Total: -43.55 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.16 3.11 -73.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074208422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.404 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds