Wall clock time and date at job start Tue Mar 31 2020 07:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 H 1.09002 * 115.54837 * 29.27666 * 3 2 1 5 5 C 1.52992 * 117.50017 * 243.61196 * 3 2 1 6 6 C 1.52993 * 60.00095 * 252.50807 * 5 3 2 7 7 H 1.09001 * 117.50278 * 107.48891 * 6 5 3 8 8 C 1.50707 * 117.50063 * 252.51099 * 6 5 3 9 9 O 1.21282 * 119.99525 * 68.61504 * 8 6 5 10 10 N 1.34774 * 119.99961 * 248.61877 * 8 6 5 11 11 C 1.44955 * 117.34004 * 357.40484 * 10 8 6 12 12 C 1.51962 * 111.93842 * 203.73067 * 11 10 8 13 13 O 1.41320 * 111.60620 * 319.68965 * 12 11 10 14 14 C 1.40857 * 118.30496 * 56.89925 * 13 12 11 15 15 H 1.08999 * 109.54026 * 188.63135 * 14 13 12 16 16 C 1.53909 * 110.30462 * 68.00466 * 14 13 12 17 17 N 1.46768 * 107.62867 * 221.40608 * 16 14 13 18 18 C 1.36935 * 125.36481 * 178.78774 * 17 16 14 19 19 H 1.08004 * 120.00347 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00265 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99614 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00376 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46971 * 60.00130 * 22 20 18 24 24 H 1.48502 * 109.46983 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47027 * 300.00114 * 22 20 18 26 26 C 1.46873 * 109.27608 * 358.81069 * 17 16 14 27 27 C 1.44547 * 117.33292 * 177.13904 * 10 8 6 28 28 H 1.08995 * 109.64840 * 286.46780 * 27 10 8 29 29 H 1.08999 * 109.47004 * 60.00065 * 1 2 3 30 30 H 1.08992 * 109.47073 * 300.00097 * 1 2 3 31 31 H 1.09008 * 109.46761 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47004 * 119.99934 * 2 1 3 33 33 H 1.09004 * 109.46915 * 240.00218 * 2 1 3 34 34 H 1.09004 * 117.49996 * 359.97438 * 5 3 2 35 35 H 1.08998 * 117.50491 * 144.99768 * 5 3 2 36 36 H 1.09008 * 108.98531 * 324.35955 * 11 10 8 37 37 H 1.08994 * 108.99122 * 83.09617 * 11 10 8 38 38 H 1.09002 * 109.05384 * 80.23774 * 12 11 10 39 39 H 1.09002 * 109.05374 * 199.14138 * 12 11 10 40 40 H 1.08998 * 109.82732 * 340.93252 * 16 14 13 41 41 H 1.09003 * 109.82594 * 101.88343 * 16 14 13 42 42 H 0.97004 * 119.99904 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.06954 * 137.03160 * 26 17 16 44 44 H 1.09000 * 110.06612 * 258.56153 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1716 0.4809 5 6 2.8441 1.9075 -1.2157 6 6 3.5501 1.6580 0.1185 7 1 4.1803 0.7720 0.1966 8 6 4.0226 2.8622 0.8918 9 8 3.2153 3.6168 1.3915 10 7 5.3421 3.1004 1.0278 11 6 6.2560 2.1309 0.4568 12 6 7.6169 2.1672 1.1319 13 8 8.0270 3.4917 1.4051 14 6 7.1862 4.3023 2.1926 15 1 7.5576 5.3270 2.1864 16 6 7.1429 3.7796 3.6396 17 7 5.7526 3.8662 4.1019 18 6 5.3009 3.4723 5.3332 19 1 4.2552 3.5751 5.5831 20 6 6.1868 2.9408 6.2602 21 7 7.4611 2.8150 5.9555 22 14 5.5705 2.4028 7.9395 23 1 4.5453 1.3415 7.7738 24 1 6.7060 1.8747 8.7376 25 1 4.9705 3.5653 8.6423 26 6 4.9220 4.4413 3.0359 27 6 5.7305 4.3050 1.7260 28 1 5.5473 5.1718 1.0912 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.0103 1.1856 -2.0153 35 1 2.7213 2.9425 -1.5345 36 1 5.8308 1.1335 0.5695 37 1 6.3810 2.3436 -0.6048 38 1 7.5649 1.6107 2.0677 39 1 8.3509 1.6950 0.4788 40 1 7.4781 2.7429 3.6684 41 1 7.7822 4.3937 4.2738 42 1 8.0804 2.4439 6.6034 43 1 3.9840 3.8919 2.9550 44 1 4.7235 5.4929 3.2426 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083199017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:14 Heat of formation + Delta-G solvation = -6.947527 kcal Electronic energy + Delta-G solvation = -25284.279566 eV Core-core repulsion = 21818.084948 eV Total energy + Delta-G solvation = -3466.194617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82569 -38.86711 -37.01549 -35.74787 -34.75271 -32.47005 -31.98799 -29.96536 -27.95117 -27.54944 -24.96382 -24.13824 -23.70192 -23.09571 -20.97956 -20.31590 -19.62008 -18.41837 -17.51863 -16.80400 -16.57225 -15.68935 -15.45046 -14.85767 -14.77727 -14.57056 -14.41274 -14.23186 -13.91468 -13.46179 -13.03066 -12.80929 -12.34328 -12.30783 -12.21859 -12.06469 -11.85964 -11.43863 -11.29072 -11.11160 -11.04320 -10.91355 -10.62262 -10.60289 -10.43391 -10.20781 -10.08619 -10.02779 -9.68285 -9.30755 -8.82123 -8.56004 -8.15971 -6.76224 -5.68070 -3.00964 2.67400 3.11294 3.42936 3.46713 3.48384 3.80014 4.10986 4.40706 4.53324 4.69427 4.70100 4.91626 4.96933 5.07154 5.17036 5.20967 5.28994 5.30570 5.40294 5.46106 5.53742 5.56015 5.67321 5.74068 5.75979 5.82586 5.89162 5.89698 5.99038 6.02824 6.03136 6.10753 6.30191 6.33696 6.58140 6.87685 7.22839 7.43812 7.53678 7.59814 7.75816 7.92526 8.28667 8.47072 9.25785 9.86196 10.49959 11.43339 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.005546 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.597459 B = 5047.922414 C = 6300.801951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.190 4.190 7 H 0.123 0.877 8 C 0.537 3.463 9 O -0.527 6.527 10 N -0.581 5.581 11 C 0.082 3.918 12 C 0.057 3.943 13 O -0.371 6.371 14 C 0.069 3.931 15 H 0.109 0.891 16 C 0.153 3.847 17 N -0.602 5.602 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.925 5.925 22 Si 0.912 3.088 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.110 3.890 27 C 0.109 3.891 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.252 0.748 43 H 0.087 0.913 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -4.763 -16.418 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.211 4.211 7 H 0.140 0.860 8 C 0.325 3.675 9 O -0.404 6.404 10 N -0.313 5.313 11 C -0.042 4.042 12 C -0.020 4.020 13 O -0.288 6.288 14 C 0.010 3.990 15 H 0.127 0.873 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.574 5.574 22 Si 0.743 3.257 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.016 4.016 27 C 0.005 3.995 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.285 -4.364 -16.014 17.419 hybrid contribution -0.248 -0.445 1.064 1.180 sum -5.533 -4.809 -14.950 16.651 Atomic orbital electron populations 1.21734 0.95262 1.01495 1.02132 1.21151 0.96218 0.93757 1.02098 1.22457 0.91723 0.98630 1.00829 0.86413 1.23058 1.02363 1.02901 0.90245 1.22394 0.97586 0.99263 1.01842 0.85957 1.19635 0.82067 0.85712 0.80037 1.90590 1.53995 1.48901 1.46950 1.46497 1.05715 1.23513 1.55613 1.21638 0.92079 0.92911 0.97581 1.22236 0.94129 0.85349 1.00315 1.86861 1.47002 1.23634 1.71317 1.22994 0.87550 0.94997 0.93499 0.87318 1.21659 0.87269 1.00609 0.87659 1.44223 1.03177 1.73480 1.12057 1.19019 0.93591 1.34031 0.88330 0.90490 1.24779 0.95633 1.01580 0.98555 1.69944 1.01727 1.51088 1.34594 0.86190 0.77286 0.78468 0.83797 1.21279 1.21609 1.21147 1.22170 0.96636 0.97718 0.85110 1.21831 0.97308 0.85707 0.94664 0.91152 0.92653 0.92389 0.92742 0.91302 0.91816 0.88044 0.88458 0.90034 0.91845 0.92035 0.88016 0.92664 0.93100 0.93771 0.89560 0.95862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.87 37.16 0.37 -0.93 16 2 C -0.09 -0.91 6.22 -26.73 -0.17 -1.07 16 3 C -0.12 -1.38 5.25 -90.63 -0.48 -1.86 16 4 H 0.12 1.61 7.60 -51.93 -0.39 1.22 16 5 C -0.15 -1.52 9.88 -26.74 -0.26 -1.79 16 6 C -0.19 -2.44 4.93 -91.77 -0.45 -2.89 16 7 H 0.12 1.37 6.29 -51.93 -0.33 1.05 16 8 C 0.54 9.30 6.93 -10.98 -0.08 9.22 16 9 O -0.53 -10.80 13.14 5.56 0.07 -10.73 16 10 N -0.58 -10.03 3.08 -168.52 -0.52 -10.54 16 11 C 0.08 1.12 5.91 -5.40 -0.03 1.09 16 12 C 0.06 0.86 6.72 36.63 0.25 1.11 16 13 O -0.37 -6.73 10.24 -34.46 -0.35 -7.08 16 14 C 0.07 1.36 3.82 -26.33 -0.10 1.26 16 15 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 16 C 0.15 3.81 5.02 -3.42 -0.02 3.79 16 17 N -0.60 -16.05 3.39 -171.21 -0.58 -16.63 16 18 C -0.22 -6.42 10.25 -15.06 -0.15 -6.58 16 19 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 20 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 21 N -0.93 -27.51 10.26 55.49 0.57 -26.94 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.11 2.54 6.29 -3.03 -0.02 2.52 16 27 C 0.11 2.12 3.45 -68.24 -0.24 1.89 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 34 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.97 5.95 -51.92 -0.31 0.66 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.09 6.81 -51.93 -0.35 0.73 16 39 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.51 5.74 -51.93 -0.30 1.21 16 41 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.09 2.15 4.81 -52.40 -0.25 1.90 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -33.08 339.17 -9.12 -42.20 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.92 Total: 1.56 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.48 Total: 5.38 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.53 Total: -54.12 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.28 Total: -17.81 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.08 -9.12 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083199017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.252 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds