Wall clock time and date at job start Tue Mar 31 2020 07:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 H 1.09002 * 115.54837 * 29.27666 * 3 2 1 5 5 C 1.52992 * 117.50017 * 243.61196 * 3 2 1 6 6 C 1.52993 * 60.00095 * 252.50807 * 5 3 2 7 7 H 1.09001 * 117.50278 * 107.48891 * 6 5 3 8 8 C 1.50707 * 117.50063 * 252.51099 * 6 5 3 9 9 O 1.21282 * 119.99525 * 68.61504 * 8 6 5 10 10 N 1.34774 * 119.99961 * 248.61877 * 8 6 5 11 11 C 1.44955 * 117.34004 * 357.40484 * 10 8 6 12 12 C 1.51962 * 111.93842 * 203.73067 * 11 10 8 13 13 O 1.41320 * 111.60620 * 319.68965 * 12 11 10 14 14 C 1.40857 * 118.30496 * 56.89925 * 13 12 11 15 15 H 1.08999 * 109.54026 * 188.63135 * 14 13 12 16 16 C 1.53909 * 110.30462 * 68.00466 * 14 13 12 17 17 N 1.46768 * 107.62867 * 221.40608 * 16 14 13 18 18 C 1.36935 * 125.36481 * 178.78774 * 17 16 14 19 19 H 1.08004 * 120.00347 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00265 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99614 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00376 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46971 * 60.00130 * 22 20 18 24 24 H 1.48502 * 109.46983 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47027 * 300.00114 * 22 20 18 26 26 C 1.46873 * 109.27608 * 358.81069 * 17 16 14 27 27 C 1.44547 * 117.33292 * 177.13904 * 10 8 6 28 28 H 1.08995 * 109.64840 * 286.46780 * 27 10 8 29 29 H 1.08999 * 109.47004 * 60.00065 * 1 2 3 30 30 H 1.08992 * 109.47073 * 300.00097 * 1 2 3 31 31 H 1.09008 * 109.46761 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47004 * 119.99934 * 2 1 3 33 33 H 1.09004 * 109.46915 * 240.00218 * 2 1 3 34 34 H 1.09004 * 117.49996 * 359.97438 * 5 3 2 35 35 H 1.08998 * 117.50491 * 144.99768 * 5 3 2 36 36 H 1.09008 * 108.98531 * 324.35955 * 11 10 8 37 37 H 1.08994 * 108.99122 * 83.09617 * 11 10 8 38 38 H 1.09002 * 109.05384 * 80.23774 * 12 11 10 39 39 H 1.09002 * 109.05374 * 199.14138 * 12 11 10 40 40 H 1.08998 * 109.82732 * 340.93252 * 16 14 13 41 41 H 1.09003 * 109.82594 * 101.88343 * 16 14 13 42 42 H 0.97004 * 119.99904 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.06954 * 137.03160 * 26 17 16 44 44 H 1.09000 * 110.06612 * 258.56153 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1716 0.4809 5 6 2.8441 1.9075 -1.2157 6 6 3.5501 1.6580 0.1185 7 1 4.1803 0.7720 0.1966 8 6 4.0226 2.8622 0.8918 9 8 3.2153 3.6168 1.3915 10 7 5.3421 3.1004 1.0278 11 6 6.2560 2.1309 0.4568 12 6 7.6169 2.1672 1.1319 13 8 8.0270 3.4917 1.4051 14 6 7.1862 4.3023 2.1926 15 1 7.5576 5.3270 2.1864 16 6 7.1429 3.7796 3.6396 17 7 5.7526 3.8662 4.1019 18 6 5.3009 3.4723 5.3332 19 1 4.2552 3.5751 5.5831 20 6 6.1868 2.9408 6.2602 21 7 7.4611 2.8150 5.9555 22 14 5.5705 2.4028 7.9395 23 1 4.5453 1.3415 7.7738 24 1 6.7060 1.8747 8.7376 25 1 4.9705 3.5653 8.6423 26 6 4.9220 4.4413 3.0359 27 6 5.7305 4.3050 1.7260 28 1 5.5473 5.1718 1.0912 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.0103 1.1856 -2.0153 35 1 2.7213 2.9425 -1.5345 36 1 5.8308 1.1335 0.5695 37 1 6.3810 2.3436 -0.6048 38 1 7.5649 1.6107 2.0677 39 1 8.3509 1.6950 0.4788 40 1 7.4781 2.7429 3.6684 41 1 7.7822 4.3937 4.2738 42 1 8.0804 2.4439 6.6034 43 1 3.9840 3.8919 2.9550 44 1 4.7235 5.4929 3.2426 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083199017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:14 Heat of formation + Delta-G solvation = -28.776596 kcal Electronic energy + Delta-G solvation = -25285.226145 eV Core-core repulsion = 21818.084948 eV Total energy + Delta-G solvation = -3467.141197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.22098 -40.18895 -38.14645 -37.49318 -36.14106 -34.34714 -32.87522 -31.70131 -29.57603 -29.24336 -26.77179 -25.39336 -24.69813 -24.42824 -22.53099 -21.44796 -21.03389 -19.81474 -19.16357 -18.30681 -18.21906 -17.04589 -16.97756 -16.46076 -16.19400 -15.79647 -15.72317 -15.38766 -15.22257 -15.17011 -14.44543 -14.14125 -13.85717 -13.77542 -13.46717 -13.24213 -13.01775 -12.95848 -12.83663 -12.80082 -12.46979 -12.21150 -12.16443 -12.12885 -11.91475 -11.87863 -11.68688 -11.16757 -10.93675 -10.81317 -10.75991 -10.29791 -9.55588 -8.92342 -7.90361 -5.26776 1.40138 1.42883 1.44261 1.50588 1.83123 2.43837 2.74014 2.85284 3.26004 3.28861 3.57859 3.68086 3.72492 3.76460 3.81970 3.97210 4.07069 4.10375 4.25360 4.28550 4.36709 4.43205 4.53066 4.53505 4.58375 4.72605 4.79128 4.85716 4.93937 4.97327 5.03405 5.07516 5.16549 5.25224 5.30613 5.36051 5.44507 5.50545 5.60764 5.64413 6.13359 6.24924 6.41070 7.04274 7.15145 7.70744 8.32934 9.18650 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.005546 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.597459 B = 5047.922414 C = 6300.801951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.127 4.127 4 H 0.088 0.912 5 C -0.118 4.118 6 C -0.201 4.201 7 H 0.145 0.855 8 C 0.526 3.474 9 O -0.571 6.571 10 N -0.588 5.588 11 C 0.078 3.922 12 C 0.050 3.950 13 O -0.372 6.372 14 C 0.085 3.915 15 H 0.126 0.874 16 C 0.165 3.835 17 N -0.619 5.619 18 C -0.247 4.247 19 H 0.071 0.929 20 C -0.059 4.059 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.107 3.893 27 C 0.121 3.879 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.026 0.974 39 H 0.148 0.852 40 H 0.026 0.974 41 H 0.014 0.986 42 H 0.249 0.751 43 H 0.070 0.930 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -6.295 -18.960 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.146 4.146 4 H 0.106 0.894 5 C -0.155 4.155 6 C -0.221 4.221 7 H 0.162 0.838 8 C 0.317 3.683 9 O -0.451 6.451 10 N -0.320 5.320 11 C -0.044 4.044 12 C -0.026 4.026 13 O -0.289 6.289 14 C 0.025 3.975 15 H 0.144 0.856 16 C 0.039 3.961 17 N -0.346 5.346 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.252 4.252 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.018 4.018 27 C 0.015 3.985 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.045 0.955 39 H 0.165 0.835 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -5.377 -5.909 -18.595 20.238 hybrid contribution -0.240 0.027 1.862 1.878 sum -5.617 -5.882 -16.732 18.604 Atomic orbital electron populations 1.21737 0.94908 1.02251 1.01737 1.21153 0.96523 0.92191 1.02833 1.22484 0.90655 0.99463 1.02017 0.89398 1.23188 0.99066 1.03504 0.89729 1.22403 0.98423 0.97875 1.03434 0.83795 1.20476 0.81626 0.86530 0.79653 1.90563 1.54993 1.50734 1.48856 1.46689 1.06643 1.23440 1.55278 1.21933 0.90316 0.93145 0.98998 1.22561 0.96694 0.83532 0.99847 1.86868 1.46853 1.24864 1.70333 1.22705 0.88455 0.95915 0.90386 0.85632 1.21409 0.85740 0.98343 0.90568 1.44460 1.04440 1.73437 1.12295 1.19299 0.93629 1.34702 0.89909 0.91127 1.25606 0.95822 1.01631 1.02124 1.70165 1.02610 1.51358 1.35447 0.85155 0.76847 0.78156 0.79184 1.20529 1.21269 1.20403 1.22216 0.96379 0.96711 0.86499 1.21577 0.95809 0.87897 0.93183 0.89257 0.91888 0.94029 0.91369 0.92289 0.89245 0.84324 0.89130 0.87962 0.88043 0.95510 0.83453 0.95626 0.96780 0.94178 0.91196 0.96499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.87 71.98 0.71 -1.64 16 2 C -0.09 -1.50 6.22 30.60 0.19 -1.31 16 3 C -0.13 -2.80 5.25 -10.80 -0.06 -2.85 16 4 H 0.09 2.47 7.60 -2.39 -0.02 2.45 16 5 C -0.12 -2.01 9.88 30.59 0.30 -1.70 16 6 C -0.20 -4.69 4.93 -11.54 -0.06 -4.75 16 7 H 0.14 2.71 6.29 -2.39 -0.02 2.69 16 8 C 0.53 17.87 6.93 87.66 0.61 18.48 16 9 O -0.57 -24.03 13.14 -3.03 -0.04 -24.06 16 10 N -0.59 -19.54 3.08 -805.46 -2.48 -22.03 16 11 C 0.08 1.89 5.91 86.33 0.51 2.40 16 12 C 0.05 1.41 6.72 71.64 0.48 1.89 16 13 O -0.37 -12.96 10.24 -146.20 -1.50 -14.46 16 14 C 0.08 3.35 3.82 30.86 0.12 3.47 16 15 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 16 C 0.16 8.53 5.02 86.63 0.43 8.96 16 17 N -0.62 -34.41 3.39 -695.60 -2.36 -36.76 16 18 C -0.25 -14.86 10.25 84.03 0.86 -14.00 16 19 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.06 -3.47 5.48 84.86 0.47 -3.00 16 21 N -0.95 -58.20 10.26 21.65 0.22 -57.98 16 22 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 26 C 0.11 5.16 6.29 86.83 0.55 5.70 16 27 C 0.12 4.64 3.45 45.83 0.16 4.80 16 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.06 7.88 -2.38 -0.02 1.04 16 34 H 0.14 1.39 8.03 -2.38 -0.02 1.37 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 2.07 5.95 -2.38 -0.01 2.05 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.03 0.94 6.81 -2.39 -0.02 0.93 16 39 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.03 1.46 5.74 -2.39 -0.01 1.45 16 41 H 0.01 0.81 7.49 -2.39 -0.02 0.80 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.07 3.65 4.81 -9.89 -0.05 3.60 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -76.40 339.17 2.10 -74.30 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.95 Total: 14.92 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 5.27 Total: 16.45 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -4.62 Total: -116.76 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.54 Total: -38.52 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -76.40 2.10 -74.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083199017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.525 kcal (2) G-P(sol) polarization free energy of solvation -76.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds