Wall clock time and date at job start Tue Mar 31 2020 07:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47275 * 2 1 4 4 H 1.09006 * 109.87508 * 303.19604 * 3 2 1 5 5 C 1.54327 * 110.01076 * 182.10071 * 3 2 1 6 6 H 1.08999 * 110.71945 * 336.68463 * 5 3 2 7 7 N 1.46497 * 110.72072 * 99.95116 * 5 3 2 8 8 C 1.34781 * 120.00352 * 205.00157 * 7 5 3 9 9 O 1.21740 * 119.99761 * 0.02562 * 8 7 5 10 10 C 1.41797 * 120.00277 * 180.02562 * 8 7 5 11 11 C 1.33452 * 118.78557 * 179.97438 * 10 8 7 12 12 O 1.34352 * 123.07630 * 180.37168 * 11 10 8 13 13 C 1.45355 * 117.48175 * 343.68823 * 12 11 10 14 14 C 1.53485 * 108.26184 * 47.48522 * 13 12 11 15 15 C 1.50420 * 118.78471 * 359.72941 * 10 8 7 16 16 C 1.55152 * 102.94214 * 218.31632 * 5 3 2 17 17 C 1.54908 * 101.57991 * 35.50162 * 16 5 3 18 18 N 1.47017 * 109.88585 * 64.21484 * 3 2 1 19 19 C 1.36932 * 125.64720 * 298.55191 * 18 3 2 20 20 H 1.08002 * 120.00247 * 336.16430 * 19 18 3 21 21 C 1.38812 * 120.00125 * 156.16662 * 19 18 3 22 22 N 1.31624 * 120.00227 * 159.99730 * 21 19 18 23 23 Si 1.86798 * 119.99997 * 339.99588 * 21 19 18 24 24 H 1.48492 * 109.47302 * 90.19688 * 23 21 19 25 25 H 1.48509 * 109.47265 * 210.19917 * 23 21 19 26 26 H 1.48501 * 109.47304 * 330.19497 * 23 21 19 27 27 H 1.09002 * 109.47399 * 172.68261 * 1 2 3 28 28 H 1.09002 * 109.46527 * 292.67930 * 1 2 3 29 29 H 1.09002 * 109.46789 * 52.67929 * 1 2 3 30 30 H 1.09006 * 109.46557 * 239.99673 * 2 1 3 31 31 H 1.09001 * 109.47023 * 120.00498 * 2 1 3 32 32 H 0.97000 * 119.99916 * 24.99956 * 7 5 3 33 33 H 1.07996 * 118.46473 * 0.39049 * 11 10 8 34 34 H 1.09000 * 109.70411 * 167.16799 * 13 12 11 35 35 H 1.08992 * 109.71104 * 287.74627 * 13 12 11 36 36 H 1.08992 * 109.70809 * 56.98470 * 14 13 12 37 37 H 1.08996 * 109.70703 * 177.56498 * 14 13 12 38 38 H 1.08998 * 109.45495 * 282.38369 * 15 10 8 39 39 H 1.08998 * 109.45681 * 42.32250 * 15 10 8 40 40 H 1.08994 * 111.00620 * 277.42330 * 16 5 3 41 41 H 1.09007 * 111.00203 * 153.57578 * 16 5 3 42 42 H 1.09003 * 110.36583 * 204.14690 * 17 16 5 43 43 H 1.09005 * 110.36809 * 81.83495 * 17 16 5 44 44 H 0.97001 * 120.00022 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6344 1.9789 -0.8578 5 6 3.5823 1.4572 -0.0532 6 1 3.9902 0.5199 0.3251 7 7 4.0515 1.7155 -1.4167 8 6 5.2710 1.2898 -1.8018 9 8 5.9824 0.6903 -1.0166 10 6 5.7253 1.5402 -3.1215 11 6 6.9370 1.1084 -3.4768 12 8 7.4556 1.3044 -4.7006 13 6 6.5405 1.6848 -5.7638 14 6 5.6459 2.8193 -5.2455 15 6 4.8215 2.2780 -4.0709 16 6 3.9511 2.6354 0.8866 17 6 2.8546 2.5201 1.9748 18 7 1.6398 2.1144 1.2448 19 6 0.3518 2.3272 1.6583 20 1 -0.4496 2.3575 0.9349 21 6 0.0761 2.5041 3.0072 22 7 -1.0444 3.0859 3.3792 23 14 1.2953 1.9163 4.2946 24 1 2.2518 3.0087 4.6058 25 1 0.5649 1.5312 5.5289 26 1 2.0386 0.7414 3.7726 27 1 -0.3634 -1.0193 -0.1309 28 1 -0.3632 0.3963 0.9483 29 1 -0.3633 0.6231 -0.8173 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.4845 2.1928 -2.0425 33 1 7.5283 0.5761 -2.7465 34 1 7.1059 2.0293 -6.6297 35 1 5.9255 0.8294 -6.0431 36 1 6.2648 3.6521 -4.9118 37 1 4.9780 3.1528 -6.0397 38 1 4.0549 1.5988 -4.4440 39 1 4.3470 3.1089 -3.5489 40 1 3.8833 3.5889 0.3630 41 1 4.9435 2.4969 1.3158 42 1 2.7007 3.4831 2.4617 43 1 3.1270 1.7621 2.7091 44 1 -1.2369 3.2098 4.3218 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087520057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:43 Heat of formation + Delta-G solvation = -38.132820 kcal Electronic energy + Delta-G solvation = -24575.792655 eV Core-core repulsion = 21108.245742 eV Total energy + Delta-G solvation = -3467.546913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79073 -39.41735 -37.94975 -34.66557 -33.92778 -32.49531 -32.13490 -31.70834 -29.29423 -27.14591 -26.05717 -24.94736 -23.73441 -22.15967 -21.68223 -20.44822 -19.76062 -18.86701 -17.93488 -17.01563 -16.50312 -16.10043 -15.76514 -15.19613 -15.00616 -14.74761 -14.45886 -14.13291 -13.63592 -13.52391 -13.30463 -13.18220 -12.97405 -12.69274 -12.44322 -12.15090 -11.82943 -11.65155 -11.36513 -11.29905 -11.08872 -10.98860 -10.88363 -10.62763 -10.36557 -10.26455 -10.04688 -9.83579 -9.69171 -9.31010 -8.87351 -8.65119 -8.52810 -7.00105 -5.95452 -3.28562 1.28119 2.89872 3.37152 3.41874 3.48627 3.51063 3.53665 4.28406 4.36313 4.53207 4.55225 4.81629 4.90107 4.92590 5.07983 5.15482 5.25305 5.26828 5.28884 5.33100 5.50586 5.65637 5.69375 5.79381 5.83771 5.92981 5.98955 5.99271 6.13463 6.21811 6.37669 6.46716 6.56442 6.62989 6.66208 6.78631 6.81305 6.96027 7.07518 7.36530 7.73110 7.76683 8.31019 8.42534 8.82790 9.67735 10.18539 11.20082 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.003767 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.623547 B = 7430.498209 C = 7725.903261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.158 3.842 4 H 0.044 0.956 5 C 0.134 3.866 6 H 0.097 0.903 7 N -0.713 5.713 8 C 0.570 3.430 9 O -0.563 6.563 10 C -0.312 4.312 11 C 0.154 3.846 12 O -0.313 6.313 13 C 0.052 3.948 14 C -0.156 4.156 15 C -0.076 4.076 16 C -0.140 4.140 17 C 0.111 3.889 18 N -0.599 5.599 19 C -0.233 4.233 20 H 0.095 0.905 21 C 0.024 3.976 22 N -0.909 5.909 23 Si 0.880 3.120 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.271 1.271 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.398 0.602 33 H 0.180 0.820 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.200 -1.944 -18.281 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.062 0.938 5 C 0.029 3.971 6 H 0.115 0.885 7 N -0.364 5.364 8 C 0.361 3.639 9 O -0.445 6.445 10 C -0.317 4.317 11 C 0.086 3.914 12 O -0.223 6.223 13 C -0.022 4.022 14 C -0.194 4.194 15 C -0.113 4.113 16 C -0.179 4.179 17 C -0.015 4.015 18 N -0.325 5.325 19 C -0.360 4.360 20 H 0.112 0.888 21 C -0.175 4.175 22 N -0.553 5.553 23 Si 0.710 3.290 24 H -0.214 1.214 25 H -0.231 1.231 26 H -0.196 1.196 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.197 0.803 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.670 -2.300 -17.649 22.442 hybrid contribution 0.001 -0.031 0.609 0.609 sum 13.671 -2.331 -17.041 21.971 Atomic orbital electron populations 1.21961 0.95306 0.99144 1.04614 1.21892 0.97285 0.97301 0.99915 1.21181 0.89947 0.92392 0.91376 0.93843 1.22068 0.94932 0.99147 0.80956 0.88547 1.45932 1.17487 1.58641 1.14336 1.16560 0.81591 0.78685 0.87052 1.90798 1.55549 1.42982 1.55172 1.20083 0.99951 1.13985 0.97633 1.22967 0.93481 0.89558 0.85384 1.86272 1.37549 1.81668 1.16849 1.23555 0.92354 0.97855 0.88441 1.22213 0.99540 0.98462 0.99178 1.20320 0.96877 0.99458 0.94619 1.23121 0.98839 0.98266 0.97697 1.21980 0.86626 0.98759 0.94113 1.44757 1.01790 1.65047 1.20934 1.18571 0.82346 1.43147 0.91949 0.88765 1.25099 0.96015 0.99551 0.96823 1.69807 1.25521 1.43640 1.16296 0.86983 0.80604 0.79886 0.81489 1.21407 1.23093 1.19625 0.95099 0.88629 0.94027 0.93932 0.92555 0.76660 0.80336 0.87452 0.90814 0.90275 0.89486 0.90535 0.90068 0.91119 0.91377 0.92226 0.95309 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.89 37.16 0.33 -2.59 16 2 C -0.12 -2.30 5.49 -26.73 -0.15 -2.45 16 3 C 0.16 3.01 3.02 -66.96 -0.20 2.81 16 4 H 0.04 0.81 7.72 -51.93 -0.40 0.41 16 5 C 0.13 2.31 2.85 -66.10 -0.19 2.13 16 6 H 0.10 1.81 7.26 -51.93 -0.38 1.44 16 7 N -0.71 -10.11 5.09 -54.87 -0.28 -10.39 16 8 C 0.57 8.34 7.53 -14.90 -0.11 8.23 16 9 O -0.56 -10.18 15.56 5.15 0.08 -10.10 16 10 C -0.31 -3.50 5.69 -105.07 -0.60 -4.09 16 11 C 0.15 1.62 10.46 29.06 0.30 1.93 16 12 O -0.31 -2.90 10.48 -14.89 -0.16 -3.05 16 13 C 0.05 0.32 7.15 37.41 0.27 0.59 16 14 C -0.16 -0.97 6.24 -26.29 -0.16 -1.14 16 15 C -0.08 -0.62 5.10 -27.83 -0.14 -0.76 16 16 C -0.14 -2.51 6.77 -24.59 -0.17 -2.67 16 17 C 0.11 2.40 4.77 -2.53 -0.01 2.39 16 18 N -0.60 -13.85 2.87 -162.58 -0.47 -14.31 16 19 C -0.23 -6.23 7.78 -15.06 -0.12 -6.35 16 20 H 0.09 2.66 7.20 -52.49 -0.38 2.28 16 21 C 0.02 0.68 5.45 -17.43 -0.09 0.58 16 22 N -0.91 -27.38 13.97 55.49 0.78 -26.61 16 23 Si 0.88 22.47 24.41 -169.99 -4.15 18.32 16 24 H -0.29 -7.18 6.94 56.52 0.39 -6.79 16 25 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 26 H -0.27 -6.83 6.36 56.52 0.36 -6.47 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 2.17 5.40 -51.93 -0.28 1.89 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.40 4.74 6.47 -40.82 -0.26 4.48 16 33 H 0.18 1.92 7.21 -52.49 -0.38 1.54 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.65 7.14 -51.93 -0.37 0.28 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.36 7.24 -51.93 -0.38 0.99 16 43 H 0.03 0.67 5.22 -51.93 -0.27 0.40 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -32.03 338.69 -7.07 -39.10 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.93 Total: 3.34 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.04 Total: -1.40 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.03 Total: -51.31 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.08 Total: -13.15 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.15 Total: 18.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.03 -7.07 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087520057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.969 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds