Wall clock time and date at job start Tue Mar 31 2020 07:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47275 * 2 1 4 4 H 1.09006 * 109.87508 * 303.19604 * 3 2 1 5 5 C 1.54327 * 110.01076 * 182.10071 * 3 2 1 6 6 H 1.08999 * 110.71945 * 336.68463 * 5 3 2 7 7 N 1.46497 * 110.72072 * 99.95116 * 5 3 2 8 8 C 1.34781 * 120.00352 * 205.00157 * 7 5 3 9 9 O 1.21740 * 119.99761 * 0.02562 * 8 7 5 10 10 C 1.41797 * 120.00277 * 180.02562 * 8 7 5 11 11 C 1.33452 * 118.78557 * 179.97438 * 10 8 7 12 12 O 1.34352 * 123.07630 * 180.37168 * 11 10 8 13 13 C 1.45355 * 117.48175 * 343.68823 * 12 11 10 14 14 C 1.53485 * 108.26184 * 47.48522 * 13 12 11 15 15 C 1.50420 * 118.78471 * 359.72941 * 10 8 7 16 16 C 1.55152 * 102.94214 * 218.31632 * 5 3 2 17 17 C 1.54908 * 101.57991 * 35.50162 * 16 5 3 18 18 N 1.47017 * 109.88585 * 64.21484 * 3 2 1 19 19 C 1.36932 * 125.64720 * 298.55191 * 18 3 2 20 20 H 1.08002 * 120.00247 * 336.16430 * 19 18 3 21 21 C 1.38812 * 120.00125 * 156.16662 * 19 18 3 22 22 N 1.31624 * 120.00227 * 159.99730 * 21 19 18 23 23 Si 1.86798 * 119.99997 * 339.99588 * 21 19 18 24 24 H 1.48492 * 109.47302 * 90.19688 * 23 21 19 25 25 H 1.48509 * 109.47265 * 210.19917 * 23 21 19 26 26 H 1.48501 * 109.47304 * 330.19497 * 23 21 19 27 27 H 1.09002 * 109.47399 * 172.68261 * 1 2 3 28 28 H 1.09002 * 109.46527 * 292.67930 * 1 2 3 29 29 H 1.09002 * 109.46789 * 52.67929 * 1 2 3 30 30 H 1.09006 * 109.46557 * 239.99673 * 2 1 3 31 31 H 1.09001 * 109.47023 * 120.00498 * 2 1 3 32 32 H 0.97000 * 119.99916 * 24.99956 * 7 5 3 33 33 H 1.07996 * 118.46473 * 0.39049 * 11 10 8 34 34 H 1.09000 * 109.70411 * 167.16799 * 13 12 11 35 35 H 1.08992 * 109.71104 * 287.74627 * 13 12 11 36 36 H 1.08992 * 109.70809 * 56.98470 * 14 13 12 37 37 H 1.08996 * 109.70703 * 177.56498 * 14 13 12 38 38 H 1.08998 * 109.45495 * 282.38369 * 15 10 8 39 39 H 1.08998 * 109.45681 * 42.32250 * 15 10 8 40 40 H 1.08994 * 111.00620 * 277.42330 * 16 5 3 41 41 H 1.09007 * 111.00203 * 153.57578 * 16 5 3 42 42 H 1.09003 * 110.36583 * 204.14690 * 17 16 5 43 43 H 1.09005 * 110.36809 * 81.83495 * 17 16 5 44 44 H 0.97001 * 120.00022 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6344 1.9789 -0.8578 5 6 3.5823 1.4572 -0.0532 6 1 3.9902 0.5199 0.3251 7 7 4.0515 1.7155 -1.4167 8 6 5.2710 1.2898 -1.8018 9 8 5.9824 0.6903 -1.0166 10 6 5.7253 1.5402 -3.1215 11 6 6.9370 1.1084 -3.4768 12 8 7.4556 1.3044 -4.7006 13 6 6.5405 1.6848 -5.7638 14 6 5.6459 2.8193 -5.2455 15 6 4.8215 2.2780 -4.0709 16 6 3.9511 2.6354 0.8866 17 6 2.8546 2.5201 1.9748 18 7 1.6398 2.1144 1.2448 19 6 0.3518 2.3272 1.6583 20 1 -0.4496 2.3575 0.9349 21 6 0.0761 2.5041 3.0072 22 7 -1.0444 3.0859 3.3792 23 14 1.2953 1.9163 4.2946 24 1 2.2518 3.0087 4.6058 25 1 0.5649 1.5312 5.5289 26 1 2.0386 0.7414 3.7726 27 1 -0.3634 -1.0193 -0.1309 28 1 -0.3632 0.3963 0.9483 29 1 -0.3633 0.6231 -0.8173 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.4845 2.1928 -2.0425 33 1 7.5283 0.5761 -2.7465 34 1 7.1059 2.0293 -6.6297 35 1 5.9255 0.8294 -6.0431 36 1 6.2648 3.6521 -4.9118 37 1 4.9780 3.1528 -6.0397 38 1 4.0549 1.5988 -4.4440 39 1 4.3470 3.1089 -3.5489 40 1 3.8833 3.5889 0.3630 41 1 4.9435 2.4969 1.3158 42 1 2.7007 3.4831 2.4617 43 1 3.1270 1.7621 2.7091 44 1 -1.2369 3.2098 4.3218 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087520057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:42 Heat of formation + Delta-G solvation = -60.308014 kcal Electronic energy + Delta-G solvation = -24576.754244 eV Core-core repulsion = 21108.245742 eV Total energy + Delta-G solvation = -3468.508502 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70755 -40.53579 -39.37927 -35.77237 -35.08854 -34.14178 -33.79192 -32.56254 -31.00691 -28.69361 -26.69418 -26.42299 -24.90885 -23.87506 -22.76206 -21.79068 -21.24411 -19.78963 -18.93788 -18.78779 -17.72084 -17.12477 -17.03682 -16.60085 -16.28817 -15.71373 -15.66744 -15.30018 -14.92433 -14.84889 -14.68851 -14.38552 -14.08265 -13.98522 -13.84999 -13.66636 -13.43665 -13.04947 -12.96661 -12.61598 -12.39248 -12.23472 -12.04045 -11.96337 -11.77360 -11.68406 -11.60487 -11.50588 -11.28232 -10.87669 -10.70449 -10.05668 -9.45632 -8.96869 -8.13216 -5.41134 0.39495 1.30803 1.39805 1.46777 2.14149 2.34358 2.43714 2.45516 3.09537 3.32974 3.66193 3.74928 3.77394 3.80531 3.98825 4.12469 4.23503 4.24037 4.29272 4.37880 4.41239 4.49391 4.60550 4.61806 4.67975 4.77286 4.84098 4.92440 4.96940 5.00164 5.07980 5.13310 5.15686 5.19689 5.22229 5.26736 5.38835 5.61675 5.69326 5.80974 6.17229 6.23097 6.64440 6.79743 7.30932 7.57613 8.15260 9.06296 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.003767 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.623547 B = 7430.498209 C = 7725.903261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.157 3.843 4 H 0.058 0.942 5 C 0.148 3.852 6 H 0.083 0.917 7 N -0.703 5.703 8 C 0.570 3.430 9 O -0.603 6.603 10 C -0.324 4.324 11 C 0.167 3.833 12 O -0.320 6.320 13 C 0.044 3.956 14 C -0.151 4.151 15 C -0.076 4.076 16 C -0.127 4.127 17 C 0.105 3.895 18 N -0.614 5.614 19 C -0.202 4.202 20 H 0.075 0.925 21 C -0.032 4.032 22 N -0.956 5.956 23 Si 0.929 3.071 24 H -0.280 1.280 25 H -0.312 1.312 26 H -0.268 1.268 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.412 0.588 33 H 0.171 0.829 34 H 0.133 0.867 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.020 0.980 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.815 -2.146 -21.187 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.051 3.949 4 H 0.075 0.925 5 C 0.042 3.958 6 H 0.101 0.899 7 N -0.355 5.355 8 C 0.363 3.637 9 O -0.487 6.487 10 C -0.329 4.329 11 C 0.098 3.902 12 O -0.230 6.230 13 C -0.029 4.029 14 C -0.189 4.189 15 C -0.113 4.113 16 C -0.166 4.166 17 C -0.020 4.020 18 N -0.340 5.340 19 C -0.331 4.331 20 H 0.092 0.908 21 C -0.226 4.226 22 N -0.603 5.603 23 Si 0.760 3.240 24 H -0.207 1.207 25 H -0.241 1.241 26 H -0.193 1.193 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.249 0.751 33 H 0.188 0.812 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.317 -2.502 -20.617 25.805 hybrid contribution -0.441 0.000 1.329 1.400 sum 14.876 -2.502 -19.288 24.486 Atomic orbital electron populations 1.21832 0.95757 1.00357 1.02487 1.21844 0.96729 0.96866 1.00561 1.21326 0.91354 0.92566 0.89694 0.92468 1.21697 0.93340 0.98267 0.82525 0.89860 1.45730 1.17757 1.58801 1.13211 1.17018 0.81032 0.77709 0.87941 1.90783 1.56566 1.44850 1.56551 1.20028 1.00797 1.15476 0.96595 1.22895 0.92978 0.88395 0.85926 1.86272 1.38701 1.81239 1.16792 1.23904 0.92580 0.98389 0.88000 1.22214 0.99582 0.98056 0.99026 1.20392 0.96799 0.99390 0.94754 1.23027 0.97766 0.99253 0.96598 1.22001 0.87319 0.97567 0.95135 1.44861 1.01046 1.65913 1.22151 1.18492 0.83468 1.39887 0.91263 0.90788 1.25565 0.97439 1.01027 0.98572 1.69905 1.27680 1.46509 1.16240 0.86173 0.78917 0.79610 0.79307 1.20706 1.24094 1.19342 0.92963 0.92754 0.93277 0.90894 0.94197 0.75051 0.81239 0.84949 0.89775 0.90876 0.87000 0.89536 0.89936 0.89808 0.90410 0.93664 0.96274 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 8.89 71.98 0.64 -4.79 16 2 C -0.12 -4.25 5.49 30.59 0.17 -4.08 16 3 C 0.16 5.69 3.02 45.34 0.14 5.83 16 4 H 0.06 1.96 7.72 -2.38 -0.02 1.95 16 5 C 0.15 4.82 2.85 46.18 0.13 4.95 16 6 H 0.08 3.01 7.26 -2.39 -0.02 2.99 16 7 N -0.70 -18.18 5.09 -445.70 -2.27 -20.45 16 8 C 0.57 15.59 7.53 85.12 0.64 16.23 16 9 O -0.60 -21.16 15.56 -4.48 -0.07 -21.23 16 10 C -0.32 -6.53 5.69 -20.16 -0.11 -6.64 16 11 C 0.17 3.22 10.46 66.74 0.70 3.92 16 12 O -0.32 -5.11 10.48 -76.21 -0.80 -5.91 16 13 C 0.04 0.39 7.15 72.15 0.52 0.90 16 14 C -0.15 -1.33 6.24 30.88 0.19 -1.13 16 15 C -0.08 -1.01 5.10 29.89 0.15 -0.85 16 16 C -0.13 -4.33 6.77 31.98 0.22 -4.11 16 17 C 0.10 4.48 4.77 86.86 0.41 4.90 16 18 N -0.61 -28.02 2.87 -668.28 -1.92 -29.95 16 19 C -0.20 -10.95 7.78 84.03 0.65 -10.30 16 20 H 0.07 4.27 7.20 -2.91 -0.02 4.25 16 21 C -0.03 -1.83 5.45 84.86 0.46 -1.37 16 22 N -0.96 -59.34 13.97 21.65 0.30 -59.04 16 23 Si 0.93 47.38 24.41 68.60 1.67 49.06 16 24 H -0.28 -13.81 6.94 99.48 0.69 -13.12 16 25 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 26 H -0.27 -13.34 6.36 99.48 0.63 -12.71 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.05 2.47 5.40 -2.39 -0.01 2.46 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.41 8.51 6.47 -92.71 -0.60 7.91 16 33 H 0.17 3.51 7.21 -2.91 -0.02 3.49 16 34 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.06 7.14 -2.39 -0.02 1.04 16 40 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 42 H 0.05 2.05 7.24 -2.39 -0.02 2.04 16 43 H 0.02 0.88 5.22 -2.38 -0.01 0.87 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -70.49 338.69 2.14 -68.36 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.31 Total: 15.72 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.91 Total: 3.45 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.89 Total: -109.43 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.87 Total: -27.15 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.67 Total: 49.06 kcal Total: -70.49 2.14 -68.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087520057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.047 kcal (2) G-P(sol) polarization free energy of solvation -70.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds