Wall clock time and date at job start Tue Mar 31 2020 07:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46852 * 2 1 4 4 C 1.52996 * 109.47223 * 239.99925 * 2 1 3 5 5 C 1.47203 * 109.46810 * 120.00137 * 2 1 3 6 6 C 2.64600 * 109.46956 * 120.00020 * 2 1 3 7 7 C 4.07801 * 109.46908 * 119.99971 * 2 1 3 8 8 O 1.21611 * 120.00257 * 359.34528 * 7 6 5 9 9 N 1.34778 * 119.99722 * 179.34316 * 7 6 5 10 10 C 1.46504 * 119.99906 * 180.27827 * 9 7 6 11 11 H 1.09001 * 109.45510 * 324.69626 * 10 9 7 12 12 C 1.53034 * 109.46071 * 84.65651 * 10 9 7 13 13 C 1.53192 * 109.31531 * 181.38718 * 12 10 9 14 14 N 1.46928 * 108.77076 * 305.36516 * 13 12 10 15 15 C 1.36942 * 120.62684 * 233.62516 * 14 13 12 16 16 H 1.08000 * 119.99751 * 27.67358 * 15 14 13 17 17 C 1.38811 * 119.99824 * 207.66333 * 15 14 13 18 18 N 1.31624 * 119.99998 * 17.36918 * 17 15 14 19 19 Si 1.86798 * 120.00104 * 197.36624 * 17 15 14 20 20 H 1.48501 * 109.47316 * 89.99976 * 19 17 15 21 21 H 1.48501 * 109.47097 * 210.00476 * 19 17 15 22 22 H 1.48506 * 109.47088 * 330.00071 * 19 17 15 23 23 C 1.46927 * 118.74168 * 53.60911 * 14 13 12 24 24 C 1.53039 * 109.45889 * 204.72298 * 10 9 7 25 25 H 1.09008 * 109.49601 * 58.62845 * 24 10 9 26 26 O 1.42901 * 109.50102 * 298.56571 * 24 10 9 27 27 H 1.09001 * 109.47276 * 300.00364 * 1 2 3 28 28 H 1.09001 * 109.46949 * 59.99868 * 1 2 3 29 29 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46969 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47451 * 299.99824 * 3 2 1 32 32 H 1.09001 * 109.47465 * 60.00316 * 3 2 1 33 33 H 1.09006 * 109.47123 * 300.00146 * 4 2 1 34 34 H 1.09002 * 109.47474 * 60.00034 * 4 2 1 35 35 H 1.08995 * 109.47277 * 179.97438 * 4 2 1 36 36 H 0.97000 * 119.99950 * 359.97438 * 9 7 6 37 37 H 1.09006 * 109.49970 * 301.33455 * 12 10 9 38 38 H 1.09001 * 109.49852 * 61.43198 * 12 10 9 39 39 H 1.08999 * 109.58932 * 185.58028 * 13 12 10 40 40 H 1.09002 * 109.58623 * 65.15020 * 13 12 10 41 41 H 0.97002 * 119.99647 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.58550 * 186.60651 * 23 14 13 43 43 H 1.08992 * 109.70558 * 66.24619 * 23 14 13 44 44 H 0.96699 * 114.00108 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0206 -0.6940 1.2019 6 6 2.4119 -1.2474 2.1605 7 6 2.8892 -1.9224 3.3297 8 8 2.2263 -2.8090 3.8332 9 7 4.0731 -1.5752 3.8722 10 6 4.5643 -2.2699 5.0649 11 1 3.7228 -2.5233 5.7097 12 6 5.2895 -3.5508 4.6464 13 6 5.7714 -4.2921 5.8974 14 7 6.5854 -3.3747 6.7064 15 6 7.8505 -3.7243 7.0971 16 1 8.4299 -4.4115 6.4984 17 6 8.3880 -3.1954 8.2624 18 7 7.5987 -2.6458 9.1610 19 14 10.2316 -3.2635 8.5554 20 1 10.8664 -2.0402 8.0022 21 1 10.4984 -3.3433 10.0141 22 1 10.7958 -4.4613 7.8829 23 6 6.0164 -2.0749 7.0880 24 6 5.5318 -1.3586 5.8235 25 1 5.0213 -0.4361 6.1004 26 8 6.6514 -1.0523 4.9900 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 4.6020 -0.8683 3.4704 37 1 4.6064 -4.1892 4.0859 38 1 6.1458 -3.2966 4.0216 39 1 6.3732 -5.1521 5.6035 40 1 4.9116 -4.6264 6.4780 41 1 7.9744 -2.2766 9.9755 42 1 6.7800 -1.4719 7.5796 43 1 5.1771 -2.2261 7.7667 44 1 7.3068 -0.4767 5.4075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099827349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:27 Heat of formation + Delta-G solvation = -26.075504 kcal Electronic energy + Delta-G solvation = -23689.496310 eV Core-core repulsion = 20222.472241 eV Total energy + Delta-G solvation = -3467.024069 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.77713 -38.01605 -37.71311 -34.80978 -34.33619 -32.59440 -31.82707 -29.41587 -29.07087 -27.68800 -27.68219 -25.52817 -23.76002 -22.32884 -21.73072 -20.68118 -19.60043 -18.24266 -17.18353 -16.22268 -16.13306 -15.51252 -15.07236 -14.93429 -14.64722 -14.52132 -14.28258 -13.86014 -13.76785 -13.26677 -12.86720 -12.83508 -12.75499 -12.18696 -12.10787 -12.08764 -12.01710 -11.65935 -11.61864 -11.29854 -11.19441 -10.83147 -10.63000 -10.54366 -10.50360 -10.38079 -10.19769 -10.05561 -10.01057 -9.68366 -9.21219 -8.75694 -8.51277 -6.70307 -5.82757 -3.23340 1.60118 2.25346 3.15902 3.35756 3.43391 3.44958 3.58552 4.08091 4.46944 4.53470 4.55630 4.65153 4.81053 5.15797 5.21651 5.22302 5.30086 5.36427 5.39269 5.44732 5.45738 5.46037 5.55069 5.65318 5.72693 5.87821 5.88326 5.93112 6.02189 6.18971 6.23594 6.44661 6.53648 6.77963 6.80518 6.96680 7.15220 7.16105 7.41492 7.65766 7.77355 8.21526 8.29646 8.41491 9.16603 9.79645 10.36377 11.26133 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.002936 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.951610 B = 9534.737887 C = 9778.828698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.083 4.083 6 C -0.212 4.212 7 C 0.626 3.374 8 O -0.529 6.529 9 N -0.704 5.704 10 C 0.162 3.838 11 H 0.094 0.906 12 C -0.138 4.138 13 C 0.148 3.852 14 N -0.583 5.583 15 C -0.242 4.242 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.907 5.907 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.145 3.855 24 C 0.073 3.927 25 H 0.045 0.955 26 O -0.560 6.560 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.405 0.595 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.021 0.979 41 H 0.254 0.746 42 H 0.097 0.903 43 H 0.029 0.971 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 9.142 -17.326 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.085 4.085 6 C -0.215 4.215 7 C 0.412 3.588 8 O -0.407 6.407 9 N -0.353 5.353 10 C 0.059 3.941 11 H 0.112 0.888 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.305 5.305 15 C -0.372 4.372 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.018 3.982 24 C 0.012 3.988 25 H 0.062 0.938 26 O -0.365 6.365 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.240 0.760 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.047 0.953 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.926 8.153 -17.172 21.925 hybrid contribution 1.470 0.700 0.517 1.708 sum -9.455 8.853 -16.655 21.099 Atomic orbital electron populations 1.21910 0.92395 1.02935 1.02686 1.17909 0.95964 0.94342 0.87989 1.21907 1.01853 0.93371 1.02741 1.21902 1.01844 1.00695 0.95440 1.22455 0.97157 0.95378 0.93523 1.20938 1.02587 1.01200 0.96725 1.14784 0.81440 0.81898 0.80704 1.90851 1.57349 1.30648 1.61808 1.46106 1.19659 1.39240 1.30334 1.21113 0.95532 0.92517 0.84960 0.88831 1.22330 0.99687 0.95545 1.00240 1.20899 0.94183 0.92590 0.90196 1.43892 1.13899 1.12543 1.60186 1.19205 0.89473 1.25817 1.02708 0.91595 1.25020 0.98130 1.01859 0.94925 1.70023 1.33142 1.43748 1.08338 0.86259 0.85498 0.77961 0.76879 1.21511 1.21867 1.20468 1.21443 0.98273 0.87917 0.90553 1.22848 0.86624 0.96032 0.93301 0.93752 1.86345 1.34433 1.72536 1.43222 0.91937 0.91249 0.91864 0.91822 0.91220 0.91931 0.91893 0.91187 0.91848 0.76034 0.92740 0.91076 0.92328 0.96107 0.93632 0.88527 0.95342 0.77747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.43 37.16 0.31 -0.68 16 2 C 0.04 0.31 0.95 -157.30 -0.15 0.16 16 3 C -0.14 -0.93 8.43 37.15 0.31 -0.62 16 4 C -0.14 -0.98 8.43 37.16 0.31 -0.66 16 5 C -0.08 -0.99 11.77 -37.12 -0.44 -1.42 16 6 C -0.21 -3.07 13.61 -38.84 -0.53 -3.60 16 7 C 0.63 10.60 7.61 -14.33 -0.11 10.49 16 8 O -0.53 -10.75 16.75 5.27 0.09 -10.66 16 9 N -0.70 -11.15 5.04 -56.21 -0.28 -11.43 16 10 C 0.16 2.93 2.20 -67.89 -0.15 2.78 16 11 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 12 C -0.14 -2.65 5.51 -26.61 -0.15 -2.80 16 13 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 14 N -0.58 -14.33 2.94 -172.32 -0.51 -14.84 16 15 C -0.24 -6.53 9.59 -15.06 -0.14 -6.67 16 16 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 17 C 0.00 -0.04 4.91 -17.43 -0.09 -0.13 16 18 N -0.91 -25.58 11.19 55.49 0.62 -24.96 16 19 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.15 3.29 4.95 -3.71 -0.02 3.27 16 24 C 0.07 1.33 3.38 -26.61 -0.09 1.24 16 25 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 26 O -0.56 -9.86 12.09 -35.23 -0.43 -10.29 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.40 5.69 8.22 -40.82 -0.34 5.35 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.43 7.61 -51.93 -0.40 1.03 16 39 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.10 2.39 6.04 -51.93 -0.31 2.07 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.38 5.72 9.08 45.56 0.41 6.14 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -31.48 363.70 -7.48 -38.96 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.48 Total: 6.89 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.94 Total: 4.55 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.17 Total: -51.23 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.34 Total: -20.95 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.48 -7.48 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099827349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.881 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds