Wall clock time and date at job start Tue Mar 31 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46852 * 2 1 4 4 C 1.52996 * 109.47223 * 239.99925 * 2 1 3 5 5 C 1.47203 * 109.46810 * 120.00137 * 2 1 3 6 6 C 2.64600 * 109.46956 * 120.00020 * 2 1 3 7 7 C 4.07801 * 109.46908 * 119.99971 * 2 1 3 8 8 O 1.21611 * 120.00257 * 359.34528 * 7 6 5 9 9 N 1.34778 * 119.99722 * 179.34316 * 7 6 5 10 10 C 1.46504 * 119.99906 * 180.27827 * 9 7 6 11 11 H 1.09001 * 109.45510 * 324.69626 * 10 9 7 12 12 C 1.53034 * 109.46071 * 84.65651 * 10 9 7 13 13 C 1.53192 * 109.31531 * 181.38718 * 12 10 9 14 14 N 1.46928 * 108.77076 * 305.36516 * 13 12 10 15 15 C 1.36942 * 120.62684 * 233.62516 * 14 13 12 16 16 H 1.08000 * 119.99751 * 27.67358 * 15 14 13 17 17 C 1.38811 * 119.99824 * 207.66333 * 15 14 13 18 18 N 1.31624 * 119.99998 * 17.36918 * 17 15 14 19 19 Si 1.86798 * 120.00104 * 197.36624 * 17 15 14 20 20 H 1.48501 * 109.47316 * 89.99976 * 19 17 15 21 21 H 1.48501 * 109.47097 * 210.00476 * 19 17 15 22 22 H 1.48506 * 109.47088 * 330.00071 * 19 17 15 23 23 C 1.46927 * 118.74168 * 53.60911 * 14 13 12 24 24 C 1.53039 * 109.45889 * 204.72298 * 10 9 7 25 25 H 1.09008 * 109.49601 * 58.62845 * 24 10 9 26 26 O 1.42901 * 109.50102 * 298.56571 * 24 10 9 27 27 H 1.09001 * 109.47276 * 300.00364 * 1 2 3 28 28 H 1.09001 * 109.46949 * 59.99868 * 1 2 3 29 29 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46969 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47451 * 299.99824 * 3 2 1 32 32 H 1.09001 * 109.47465 * 60.00316 * 3 2 1 33 33 H 1.09006 * 109.47123 * 300.00146 * 4 2 1 34 34 H 1.09002 * 109.47474 * 60.00034 * 4 2 1 35 35 H 1.08995 * 109.47277 * 179.97438 * 4 2 1 36 36 H 0.97000 * 119.99950 * 359.97438 * 9 7 6 37 37 H 1.09006 * 109.49970 * 301.33455 * 12 10 9 38 38 H 1.09001 * 109.49852 * 61.43198 * 12 10 9 39 39 H 1.08999 * 109.58932 * 185.58028 * 13 12 10 40 40 H 1.09002 * 109.58623 * 65.15020 * 13 12 10 41 41 H 0.97002 * 119.99647 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.58550 * 186.60651 * 23 14 13 43 43 H 1.08992 * 109.70558 * 66.24619 * 23 14 13 44 44 H 0.96699 * 114.00108 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0206 -0.6940 1.2019 6 6 2.4119 -1.2474 2.1605 7 6 2.8892 -1.9224 3.3297 8 8 2.2263 -2.8090 3.8332 9 7 4.0731 -1.5752 3.8722 10 6 4.5643 -2.2699 5.0649 11 1 3.7228 -2.5233 5.7097 12 6 5.2895 -3.5508 4.6464 13 6 5.7714 -4.2921 5.8974 14 7 6.5854 -3.3747 6.7064 15 6 7.8505 -3.7243 7.0971 16 1 8.4299 -4.4115 6.4984 17 6 8.3880 -3.1954 8.2624 18 7 7.5987 -2.6458 9.1610 19 14 10.2316 -3.2635 8.5554 20 1 10.8664 -2.0402 8.0022 21 1 10.4984 -3.3433 10.0141 22 1 10.7958 -4.4613 7.8829 23 6 6.0164 -2.0749 7.0880 24 6 5.5318 -1.3586 5.8235 25 1 5.0213 -0.4361 6.1004 26 8 6.6514 -1.0523 4.9900 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 4.6020 -0.8683 3.4704 37 1 4.6064 -4.1892 4.0859 38 1 6.1458 -3.2966 4.0216 39 1 6.3732 -5.1521 5.6035 40 1 4.9116 -4.6264 6.4780 41 1 7.9744 -2.2766 9.9755 42 1 6.7800 -1.4719 7.5796 43 1 5.1771 -2.2261 7.7667 44 1 7.3068 -0.4767 5.4075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099827349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:26 Heat of formation + Delta-G solvation = -47.851177 kcal Electronic energy + Delta-G solvation = -23690.440574 eV Core-core repulsion = 20222.472241 eV Total energy + Delta-G solvation = -3467.968333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20373 -39.50964 -38.46860 -36.51793 -35.82388 -34.08944 -33.23141 -31.16698 -30.72017 -28.20565 -28.18689 -27.28560 -25.20149 -23.94731 -23.26331 -21.77697 -21.15794 -19.62976 -18.92634 -17.69671 -17.16790 -16.99582 -16.77515 -16.25368 -15.86547 -15.49044 -15.43377 -15.21653 -15.20334 -15.03231 -14.56049 -13.85698 -13.68244 -13.35885 -13.32647 -13.17174 -12.83612 -12.74614 -12.66948 -12.61509 -12.37426 -12.34831 -12.28076 -12.22879 -12.06040 -11.85466 -11.65646 -11.37682 -11.31668 -11.24037 -10.78424 -10.58881 -10.17187 -8.69489 -7.88092 -5.32059 0.44622 1.20230 1.48826 1.50379 1.59203 1.96747 2.40573 2.51827 3.06071 3.25066 3.36769 3.63267 3.80608 3.94700 3.95712 3.97116 3.99783 4.29268 4.31716 4.37421 4.57906 4.67927 4.74489 4.75404 4.83003 4.84243 4.90942 4.96533 4.96687 5.04392 5.07104 5.15409 5.20088 5.33220 5.35797 5.37366 5.41073 5.54769 5.65187 6.14411 6.35296 6.37924 6.88889 6.99531 7.14166 7.81662 8.34802 9.18576 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.002936 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.951610 B = 9534.737887 C = 9778.828698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.038 4.038 6 C -0.268 4.268 7 C 0.630 3.370 8 O -0.571 6.571 9 N -0.691 5.691 10 C 0.167 3.833 11 H 0.080 0.920 12 C -0.122 4.122 13 C 0.146 3.854 14 N -0.598 5.598 15 C -0.255 4.255 16 H 0.062 0.938 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.275 1.275 23 C 0.150 3.850 24 C 0.092 3.908 25 H 0.071 0.929 26 O -0.561 6.561 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.416 0.584 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.014 0.986 41 H 0.251 0.749 42 H 0.075 0.925 43 H 0.007 0.993 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.271 10.806 -19.861 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.041 4.041 6 C -0.271 4.271 7 C 0.418 3.582 8 O -0.452 6.452 9 N -0.340 5.340 10 C 0.063 3.937 11 H 0.098 0.902 12 C -0.162 4.162 13 C 0.019 3.981 14 N -0.321 5.321 15 C -0.385 4.385 16 H 0.080 0.920 17 C -0.242 4.242 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.200 1.200 23 C 0.023 3.977 24 C 0.030 3.970 25 H 0.089 0.911 26 O -0.368 6.368 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.025 0.975 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.978 9.846 -19.744 24.643 hybrid contribution 1.430 0.190 1.231 1.896 sum -9.549 10.036 -18.512 23.121 Atomic orbital electron populations 1.21944 0.91213 1.02823 1.03919 1.18329 0.96876 0.95124 0.86652 1.21931 1.01764 0.92071 1.03932 1.21933 1.01690 1.00488 0.95684 1.23406 0.94525 0.93150 0.92971 1.20565 1.05316 1.03612 0.97597 1.14973 0.81004 0.81237 0.80956 1.90819 1.58463 1.32637 1.63281 1.45851 1.19587 1.39108 1.29494 1.20858 0.94956 0.92277 0.85638 0.90207 1.22109 0.99488 0.95914 0.98688 1.20966 0.93629 0.92679 0.90804 1.44113 1.13746 1.13767 1.60489 1.19436 0.90499 1.25772 1.02758 0.92008 1.25702 1.01883 1.01914 0.94684 1.70166 1.34658 1.44714 1.08638 0.85262 0.80764 0.78161 0.76173 1.20690 1.22429 1.19980 1.21326 0.96711 0.87386 0.92236 1.22510 0.86888 0.96381 0.91189 0.91131 1.86319 1.34626 1.72927 1.42971 0.92425 0.88380 0.92693 0.92040 0.88557 0.92305 0.92664 0.88383 0.92172 0.74700 0.92343 0.91518 0.92358 0.96802 0.93970 0.90656 0.97546 0.76342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.43 71.98 0.61 -0.98 16 2 C 0.03 0.41 0.95 -53.99 -0.05 0.36 16 3 C -0.14 -1.39 8.43 71.98 0.61 -0.78 16 4 C -0.14 -1.52 8.43 71.98 0.61 -0.92 16 5 C -0.04 -0.85 11.77 31.13 0.37 -0.48 16 6 C -0.27 -7.65 13.61 30.02 0.41 -7.25 16 7 C 0.63 21.43 7.61 85.49 0.65 22.08 16 8 O -0.57 -23.74 16.75 -4.07 -0.07 -23.81 16 9 N -0.69 -21.48 5.04 -449.99 -2.27 -23.75 16 10 C 0.17 6.02 2.20 45.02 0.10 6.12 16 11 H 0.08 3.15 7.58 -2.39 -0.02 3.13 16 12 C -0.12 -4.69 5.51 30.67 0.17 -4.52 16 13 C 0.15 6.43 6.52 86.36 0.56 6.99 16 14 N -0.60 -29.86 2.94 -699.08 -2.05 -31.91 16 15 C -0.25 -13.84 9.59 84.03 0.81 -13.03 16 16 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 17 C -0.05 -2.54 4.91 84.86 0.42 -2.12 16 18 N -0.94 -53.59 11.19 21.65 0.24 -53.35 16 19 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.15 6.91 4.95 86.36 0.43 7.34 16 24 C 0.09 3.27 3.38 30.67 0.10 3.37 16 25 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 26 O -0.56 -18.97 12.09 -148.98 -1.80 -20.77 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.42 11.13 8.22 -92.71 -0.76 10.36 16 37 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.07 2.63 7.61 -2.39 -0.02 2.62 16 39 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 40 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.08 3.79 6.04 -2.38 -0.01 3.78 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.39 11.20 9.08 -74.06 -0.67 10.53 16 Total: -1.00 -68.65 363.70 1.43 -67.22 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.43 Total: 24.18 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 5.78 Total: 16.18 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.08 Total: -109.01 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.87 Total: -44.57 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.65 1.43 -67.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099827349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.364 kcal (2) G-P(sol) polarization free energy of solvation -68.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds