Wall clock time and date at job start Tue Mar 31 2020 07:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47300 * 2 1 4 4 C 1.52999 * 109.46958 * 239.99854 * 2 1 3 5 5 C 1.47201 * 109.47062 * 120.00077 * 2 1 3 6 6 C 2.64600 * 109.47178 * 120.00047 * 2 1 3 7 7 C 4.07800 * 109.47086 * 119.99967 * 2 1 3 8 8 O 1.21610 * 120.00393 * 23.56316 * 7 6 5 9 9 N 1.34777 * 119.99714 * 203.56285 * 7 6 5 10 10 C 1.46495 * 120.00097 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.45156 * 324.96915 * 10 9 7 12 12 C 1.53039 * 109.46210 * 84.93281 * 10 9 7 13 13 C 1.52760 * 109.38854 * 181.25925 * 12 10 9 14 14 N 1.46922 * 109.00877 * 305.58987 * 13 12 10 15 15 C 1.36932 * 120.63376 * 233.58214 * 14 13 12 16 16 H 1.08002 * 120.00663 * 152.17063 * 15 14 13 17 17 C 1.38819 * 119.99763 * 331.89781 * 15 14 13 18 18 N 1.31619 * 119.99653 * 343.16079 * 17 15 14 19 19 Si 1.86799 * 120.00056 * 163.16209 * 17 15 14 20 20 H 1.48498 * 109.47033 * 89.99898 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99748 * 19 17 15 22 22 H 1.48496 * 109.47329 * 330.00182 * 19 17 15 23 23 C 1.46930 * 118.73694 * 53.30539 * 14 13 12 24 24 C 1.53042 * 109.46148 * 205.00152 * 10 9 7 25 25 H 1.09002 * 109.49778 * 298.56636 * 24 10 9 26 26 O 1.42897 * 109.50086 * 58.66312 * 24 10 9 27 27 H 1.08999 * 109.47246 * 299.99546 * 1 2 3 28 28 H 1.08996 * 109.47263 * 60.00227 * 1 2 3 29 29 H 1.09004 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47484 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47078 * 300.00157 * 3 2 1 32 32 H 1.08999 * 109.47146 * 59.99523 * 3 2 1 33 33 H 1.09002 * 109.47497 * 300.00084 * 4 2 1 34 34 H 1.09004 * 109.47442 * 59.99996 * 4 2 1 35 35 H 1.09001 * 109.47402 * 180.02562 * 4 2 1 36 36 H 0.97009 * 120.00088 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.49950 * 301.34344 * 12 10 9 38 38 H 1.09007 * 109.49637 * 61.40177 * 12 10 9 39 39 H 1.08996 * 109.51085 * 185.70306 * 13 12 10 40 40 H 1.09005 * 109.42847 * 65.42406 * 13 12 10 41 41 H 0.97007 * 119.99830 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.58541 * 66.43258 * 23 14 13 43 43 H 1.09004 * 109.58472 * 186.71118 * 23 14 13 44 44 H 0.96698 * 114.00308 * 179.83885 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4120 -1.2474 2.1604 7 6 2.8893 -1.9224 3.3297 8 8 2.5023 -3.0470 3.5832 9 7 3.7675 -1.3112 4.1493 10 6 4.2563 -2.0019 5.3452 11 1 3.4588 -2.6187 5.7595 12 6 5.4453 -2.8899 4.9710 13 6 5.9337 -3.6332 6.2130 14 7 6.2193 -2.6572 7.2734 15 6 7.4384 -2.6407 7.8967 16 1 7.8190 -1.7204 8.3145 17 6 8.1826 -3.8083 7.9967 18 7 7.6051 -4.9752 7.8039 19 14 10.0034 -3.7232 8.4048 20 1 10.1836 -3.7765 9.8778 21 1 10.7052 -4.8722 7.7784 22 1 10.5690 -2.4533 7.8826 23 6 5.1739 -1.6950 7.6481 24 6 4.6959 -0.9698 6.3862 25 1 5.5103 -0.3689 5.9814 26 8 3.5931 -0.1217 6.7123 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2075 -2.1393 35 1 3.1300 -0.7217 -1.2491 36 1 4.0760 -0.4139 3.9473 37 1 5.1374 -3.6095 4.2124 38 1 6.2524 -2.2709 4.5790 39 1 6.8410 -4.1872 5.9723 40 1 5.1603 -4.3233 6.5501 41 1 8.1252 -5.7911 7.8734 42 1 4.3373 -2.2239 8.1047 43 1 5.5794 -0.9722 8.3561 44 1 3.7995 0.5565 7.3700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099827350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:30 Heat of formation + Delta-G solvation = -27.337584 kcal Electronic energy + Delta-G solvation = -23557.626289 eV Core-core repulsion = 20090.547492 eV Total energy + Delta-G solvation = -3467.078797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.75610 -38.02084 -37.69869 -35.42955 -34.33694 -32.53158 -31.74289 -29.98287 -28.57855 -27.67351 -27.66510 -25.54508 -23.76061 -22.35755 -21.75646 -20.70195 -19.69267 -18.26670 -17.06465 -16.57913 -16.16438 -15.97966 -14.99581 -14.84336 -14.63756 -14.45704 -14.40629 -13.93769 -13.66007 -13.24034 -12.87196 -12.80967 -12.75938 -12.31839 -12.12860 -12.09155 -12.07109 -11.63759 -11.59202 -11.58758 -11.13847 -10.88217 -10.77305 -10.46246 -10.40141 -10.34418 -10.27648 -10.06113 -9.93275 -9.75506 -9.51545 -8.80764 -8.47384 -6.78371 -5.85881 -3.30148 1.64612 2.28181 3.17808 3.33823 3.41026 3.42693 3.63550 4.08738 4.35999 4.50519 4.55381 4.57499 4.68574 5.18414 5.22832 5.24128 5.28871 5.32079 5.37916 5.46114 5.47207 5.47598 5.52850 5.66798 5.73386 5.75485 5.89515 5.90020 5.95019 6.08661 6.27633 6.46241 6.49432 6.65419 6.75958 6.80839 7.18890 7.27883 7.59185 7.65976 7.71815 7.90307 8.32778 8.36604 9.12031 9.74424 10.30235 11.22841 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.002983 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.424078 B = 9384.633513 C = 9659.097870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.085 4.085 6 C -0.209 4.209 7 C 0.628 3.372 8 O -0.525 6.525 9 N -0.702 5.702 10 C 0.162 3.838 11 H 0.091 0.909 12 C -0.148 4.148 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.260 4.260 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.057 0.943 26 O -0.571 6.571 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.399 0.601 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.025 0.975 41 H 0.256 0.744 42 H 0.030 0.970 43 H 0.061 0.939 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 13.231 -14.673 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.087 4.087 6 C -0.212 4.212 7 C 0.414 3.586 8 O -0.403 6.403 9 N -0.351 5.351 10 C 0.059 3.941 11 H 0.109 0.891 12 C -0.188 4.188 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.375 6.375 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.577 11.853 -14.867 21.757 hybrid contribution 1.396 0.706 0.593 1.673 sum -9.181 12.558 -14.274 21.112 Atomic orbital electron populations 1.21905 0.92363 1.02949 1.02685 1.17899 0.95955 0.94303 0.88002 1.21906 1.01788 0.93423 1.02734 1.21905 1.01807 1.00744 0.95449 1.22440 0.95810 0.96587 0.93892 1.20944 1.03176 1.00317 0.96773 1.14717 0.79010 0.84691 0.80205 1.90862 1.58165 1.18017 1.73266 1.45964 1.44485 1.19385 1.25229 1.21105 0.97525 0.93002 0.82461 0.89084 1.22562 0.95911 0.98895 1.01434 1.20748 1.00480 0.90097 0.84184 1.44032 1.11077 1.36472 1.39627 1.19144 0.93150 0.93483 1.33179 0.91546 1.25082 0.99073 0.95160 1.00094 1.70035 1.34641 0.96731 1.52804 0.86279 0.85103 0.77209 0.78047 1.21307 1.21458 1.20443 1.21528 0.92675 0.93409 0.93051 1.22780 0.87434 0.91015 0.96859 0.92475 1.86484 1.38362 1.48480 1.64219 0.91934 0.91233 0.91855 0.91892 0.91257 0.91901 0.91856 0.91220 0.91904 0.76687 0.91736 0.92218 0.88778 0.95724 0.93407 0.95221 0.92068 0.77924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.43 37.16 0.31 -0.70 16 2 C 0.04 0.32 0.95 -157.30 -0.15 0.17 16 3 C -0.14 -0.94 8.43 37.15 0.31 -0.63 16 4 C -0.14 -1.02 8.43 37.16 0.31 -0.71 16 5 C -0.08 -1.04 11.77 -37.12 -0.44 -1.47 16 6 C -0.21 -3.13 13.61 -38.84 -0.53 -3.66 16 7 C 0.63 11.06 7.61 -14.33 -0.11 10.95 16 8 O -0.53 -11.23 16.75 5.27 0.09 -11.14 16 9 N -0.70 -11.28 4.91 -56.21 -0.28 -11.56 16 10 C 0.16 2.99 2.12 -67.89 -0.14 2.85 16 11 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 12 C -0.15 -2.94 5.63 -26.83 -0.15 -3.09 16 13 C 0.17 4.10 5.28 -3.93 -0.02 4.08 16 14 N -0.59 -14.37 3.00 -172.58 -0.52 -14.89 16 15 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 16 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 17 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 18 N -0.90 -25.81 11.18 55.49 0.62 -25.19 16 19 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.12 2.45 6.14 -3.71 -0.02 2.43 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.28 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 O -0.57 -8.59 13.16 -35.23 -0.46 -9.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.40 5.39 8.57 -40.82 -0.35 5.04 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 2.50 6.05 -51.93 -0.31 2.18 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 44 H 0.37 3.99 9.08 45.56 0.41 4.41 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -32.37 365.35 -7.53 -39.90 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.52 Total: 5.76 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.94 Total: 4.48 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.17 Total: -51.63 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.38 Total: -20.20 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.37 -7.53 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099827350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.566 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds