Wall clock time and date at job start Tue Mar 31 2020 07:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47300 * 2 1 4 4 C 1.52999 * 109.46958 * 239.99854 * 2 1 3 5 5 C 1.47201 * 109.47062 * 120.00077 * 2 1 3 6 6 C 2.64600 * 109.47178 * 120.00047 * 2 1 3 7 7 C 4.07800 * 109.47086 * 119.99967 * 2 1 3 8 8 O 1.21610 * 120.00393 * 23.56316 * 7 6 5 9 9 N 1.34777 * 119.99714 * 203.56285 * 7 6 5 10 10 C 1.46495 * 120.00097 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.45156 * 324.96915 * 10 9 7 12 12 C 1.53039 * 109.46210 * 84.93281 * 10 9 7 13 13 C 1.52760 * 109.38854 * 181.25925 * 12 10 9 14 14 N 1.46922 * 109.00877 * 305.58987 * 13 12 10 15 15 C 1.36932 * 120.63376 * 233.58214 * 14 13 12 16 16 H 1.08002 * 120.00663 * 152.17063 * 15 14 13 17 17 C 1.38819 * 119.99763 * 331.89781 * 15 14 13 18 18 N 1.31619 * 119.99653 * 343.16079 * 17 15 14 19 19 Si 1.86799 * 120.00056 * 163.16209 * 17 15 14 20 20 H 1.48498 * 109.47033 * 89.99898 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99748 * 19 17 15 22 22 H 1.48496 * 109.47329 * 330.00182 * 19 17 15 23 23 C 1.46930 * 118.73694 * 53.30539 * 14 13 12 24 24 C 1.53042 * 109.46148 * 205.00152 * 10 9 7 25 25 H 1.09002 * 109.49778 * 298.56636 * 24 10 9 26 26 O 1.42897 * 109.50086 * 58.66312 * 24 10 9 27 27 H 1.08999 * 109.47246 * 299.99546 * 1 2 3 28 28 H 1.08996 * 109.47263 * 60.00227 * 1 2 3 29 29 H 1.09004 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47484 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47078 * 300.00157 * 3 2 1 32 32 H 1.08999 * 109.47146 * 59.99523 * 3 2 1 33 33 H 1.09002 * 109.47497 * 300.00084 * 4 2 1 34 34 H 1.09004 * 109.47442 * 59.99996 * 4 2 1 35 35 H 1.09001 * 109.47402 * 180.02562 * 4 2 1 36 36 H 0.97009 * 120.00088 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.49950 * 301.34344 * 12 10 9 38 38 H 1.09007 * 109.49637 * 61.40177 * 12 10 9 39 39 H 1.08996 * 109.51085 * 185.70306 * 13 12 10 40 40 H 1.09005 * 109.42847 * 65.42406 * 13 12 10 41 41 H 0.97007 * 119.99830 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.58541 * 66.43258 * 23 14 13 43 43 H 1.09004 * 109.58472 * 186.71118 * 23 14 13 44 44 H 0.96698 * 114.00308 * 179.83885 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4120 -1.2474 2.1604 7 6 2.8893 -1.9224 3.3297 8 8 2.5023 -3.0470 3.5832 9 7 3.7675 -1.3112 4.1493 10 6 4.2563 -2.0019 5.3452 11 1 3.4588 -2.6187 5.7595 12 6 5.4453 -2.8899 4.9710 13 6 5.9337 -3.6332 6.2130 14 7 6.2193 -2.6572 7.2734 15 6 7.4384 -2.6407 7.8967 16 1 7.8190 -1.7204 8.3145 17 6 8.1826 -3.8083 7.9967 18 7 7.6051 -4.9752 7.8039 19 14 10.0034 -3.7232 8.4048 20 1 10.1836 -3.7765 9.8778 21 1 10.7052 -4.8722 7.7784 22 1 10.5690 -2.4533 7.8826 23 6 5.1739 -1.6950 7.6481 24 6 4.6959 -0.9698 6.3862 25 1 5.5103 -0.3689 5.9814 26 8 3.5931 -0.1217 6.7123 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2075 -2.1393 35 1 3.1300 -0.7217 -1.2491 36 1 4.0760 -0.4139 3.9473 37 1 5.1374 -3.6095 4.2124 38 1 6.2524 -2.2709 4.5790 39 1 6.8410 -4.1872 5.9723 40 1 5.1603 -4.3233 6.5501 41 1 8.1252 -5.7911 7.8734 42 1 4.3373 -2.2239 8.1047 43 1 5.5794 -0.9722 8.3561 44 1 3.7995 0.5565 7.3700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099827350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:30 Heat of formation + Delta-G solvation = -50.622273 kcal Electronic energy + Delta-G solvation = -23558.635989 eV Core-core repulsion = 20090.547492 eV Total energy + Delta-G solvation = -3468.088497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21520 -39.49020 -38.46900 -37.01045 -35.87911 -33.99692 -33.24628 -31.69175 -30.22488 -28.20947 -28.18160 -27.31773 -25.21520 -23.95239 -23.29868 -21.83087 -21.30876 -19.62049 -18.76018 -18.06854 -17.57160 -16.99088 -16.72751 -16.23025 -15.91733 -15.69431 -15.26045 -15.19748 -15.16484 -14.98239 -14.54154 -13.93568 -13.70590 -13.34621 -13.32643 -13.29783 -13.00564 -12.75451 -12.71502 -12.61350 -12.46376 -12.27652 -12.26906 -12.13948 -12.10710 -11.90581 -11.69911 -11.34085 -11.27951 -11.24402 -11.07912 -10.59133 -10.19317 -8.78072 -7.91014 -5.38612 0.44871 1.19998 1.48262 1.50140 1.59747 1.94900 2.40825 2.48978 3.01984 3.12758 3.27526 3.59455 3.80461 3.95241 3.96406 3.97881 4.00770 4.18029 4.29309 4.36466 4.49989 4.62969 4.74464 4.75569 4.80544 4.84251 4.88445 4.96591 4.96830 4.98322 5.07285 5.10089 5.19996 5.29708 5.35518 5.35755 5.37965 5.58826 5.64591 6.14020 6.32810 6.34538 6.86428 7.00258 7.08590 7.76744 8.29638 9.16717 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.002983 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.424078 B = 9384.633513 C = 9659.097870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.031 3.969 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.037 4.037 6 C -0.267 4.267 7 C 0.630 3.370 8 O -0.575 6.575 9 N -0.687 5.687 10 C 0.168 3.832 11 H 0.060 0.940 12 C -0.131 4.131 13 C 0.181 3.819 14 N -0.604 5.604 15 C -0.266 4.266 16 H 0.078 0.922 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.265 1.265 23 C 0.118 3.882 24 C 0.103 3.897 25 H 0.077 0.923 26 O -0.571 6.571 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.415 0.585 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.065 0.935 40 H -0.008 1.008 41 H 0.251 0.749 42 H 0.013 0.987 43 H 0.079 0.921 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 16.648 -16.422 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 C -0.196 4.196 4 C -0.199 4.199 5 C -0.040 4.040 6 C -0.270 4.270 7 C 0.418 3.582 8 O -0.456 6.456 9 N -0.336 5.336 10 C 0.064 3.936 11 H 0.079 0.921 12 C -0.171 4.171 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.396 4.396 16 H 0.096 0.904 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.799 3.201 20 H -0.211 1.211 21 H -0.222 1.222 22 H -0.189 1.189 23 C -0.009 4.009 24 C 0.042 3.958 25 H 0.094 0.906 26 O -0.379 6.379 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.252 0.748 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.097 0.903 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.638 15.360 -16.610 25.000 hybrid contribution 1.295 -0.280 1.103 1.724 sum -9.343 15.080 -15.507 23.562 Atomic orbital electron populations 1.21941 0.91125 1.02783 1.04018 1.18337 0.96897 0.95201 0.86521 1.21928 1.01733 0.91947 1.04024 1.21941 1.01645 1.00467 0.95814 1.23413 0.92896 0.94404 0.93251 1.20520 1.06060 1.02803 0.97646 1.14989 0.78421 0.84113 0.80723 1.90828 1.59918 1.20233 1.74627 1.45698 1.43952 1.19778 1.24141 1.20794 0.95756 0.93278 0.83801 0.92145 1.22286 0.96865 0.98839 0.99121 1.20451 0.98098 0.90149 0.85894 1.44241 1.11735 1.37009 1.39833 1.19568 0.93958 0.93771 1.32255 0.90409 1.25908 1.03166 0.94861 1.00760 1.70208 1.36021 0.97280 1.54745 0.85218 0.80010 0.77269 0.77570 1.21127 1.22219 1.18940 1.21694 0.91175 0.92923 0.95067 1.22308 0.88255 0.90684 0.94549 0.90556 1.86458 1.37440 1.48816 1.65190 0.92295 0.88281 0.92824 0.92062 0.88559 0.92109 0.92819 0.88293 0.92251 0.74771 0.92389 0.90904 0.91686 0.98968 0.94009 0.96891 0.90263 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.43 71.98 0.61 -1.02 16 2 C 0.03 0.43 0.95 -53.99 -0.05 0.37 16 3 C -0.14 -1.37 8.43 71.98 0.61 -0.76 16 4 C -0.14 -1.63 8.43 71.98 0.61 -1.02 16 5 C -0.04 -0.86 11.77 31.13 0.37 -0.49 16 6 C -0.27 -7.95 13.61 30.02 0.41 -7.54 16 7 C 0.63 22.65 7.61 85.49 0.65 23.30 16 8 O -0.57 -25.76 16.75 -4.06 -0.07 -25.83 16 9 N -0.69 -21.81 4.91 -450.00 -2.21 -24.02 16 10 C 0.17 6.25 2.12 45.02 0.10 6.34 16 11 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 12 C -0.13 -5.34 5.63 30.53 0.17 -5.17 16 13 C 0.18 9.05 5.28 86.22 0.45 9.51 16 14 N -0.60 -29.86 3.00 -699.92 -2.10 -31.96 16 15 C -0.27 -14.12 9.58 84.04 0.81 -13.32 16 16 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 17 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 18 N -0.94 -55.75 11.18 21.65 0.24 -55.51 16 19 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 C 0.12 4.71 6.14 86.36 0.53 5.24 16 24 C 0.10 3.36 3.14 30.67 0.10 3.46 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 O -0.57 -15.81 13.16 -148.98 -1.96 -17.77 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.59 8.14 -2.38 -0.02 0.58 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.42 10.51 8.57 -92.70 -0.79 9.71 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 39 H 0.06 3.63 6.05 -2.39 -0.01 3.61 16 40 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 41 H 0.25 14.48 8.31 -92.70 -0.77 13.70 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 44 H 0.40 7.12 9.08 -74.06 -0.67 6.45 16 Total: -1.00 -73.26 365.35 1.24 -72.02 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.46 Total: 20.65 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 5.77 Total: 16.49 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -4.07 Total: -111.48 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.03 Total: -43.60 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -73.26 1.24 -72.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099827350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.396 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds