Wall clock time and date at job start Tue Mar 31 2020 07:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.53001 * 109.46651 * 240.00255 * 2 1 3 5 5 C 1.47201 * 109.47391 * 120.00816 * 2 1 3 6 6 C 2.64607 * 109.47407 * 120.00511 * 2 1 3 7 7 C 4.07802 * 109.47367 * 120.00439 * 2 1 3 8 8 O 1.21611 * 119.99759 * 308.20126 * 7 6 5 9 9 N 1.34771 * 119.99938 * 128.20227 * 7 6 5 10 10 C 1.46498 * 120.00391 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45895 * 34.96976 * 10 9 7 12 12 C 1.53045 * 109.45800 * 275.00172 * 10 9 7 13 13 C 1.53197 * 109.33523 * 178.59334 * 12 10 9 14 14 N 1.46988 * 108.74054 * 54.62539 * 13 12 10 15 15 C 1.36931 * 120.62061 * 126.38474 * 14 13 12 16 16 H 1.08003 * 120.00549 * 207.69125 * 15 14 13 17 17 C 1.38814 * 119.99725 * 27.68301 * 15 14 13 18 18 N 1.31614 * 120.00044 * 17.35431 * 17 15 14 19 19 Si 1.86808 * 120.00100 * 197.35456 * 17 15 14 20 20 H 1.48505 * 109.46884 * 89.99975 * 19 17 15 21 21 H 1.48498 * 109.47378 * 210.00238 * 19 17 15 22 22 H 1.48504 * 109.47049 * 330.00189 * 19 17 15 23 23 C 1.46930 * 118.75483 * 306.40354 * 14 13 12 24 24 C 1.53034 * 109.46549 * 154.93387 * 10 9 7 25 25 H 1.08990 * 109.49953 * 61.43291 * 24 10 9 26 26 O 1.42905 * 109.49360 * 301.36891 * 24 10 9 27 27 H 1.09000 * 109.46779 * 299.99192 * 1 2 3 28 28 H 1.08988 * 109.47434 * 59.99835 * 1 2 3 29 29 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46847 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47277 * 300.00071 * 3 2 1 32 32 H 1.09001 * 109.47149 * 60.00709 * 3 2 1 33 33 H 1.09004 * 109.47695 * 299.99790 * 4 2 1 34 34 H 1.09001 * 109.47430 * 60.00135 * 4 2 1 35 35 H 1.09001 * 109.47333 * 180.02562 * 4 2 1 36 36 H 0.97003 * 120.00341 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.49819 * 298.55962 * 12 10 9 38 38 H 1.09001 * 109.49650 * 58.63046 * 12 10 9 39 39 H 1.09008 * 109.57889 * 174.43827 * 13 12 10 40 40 H 1.08995 * 109.59109 * 294.86129 * 13 12 10 41 41 H 0.97007 * 120.00009 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.58730 * 293.82478 * 23 14 13 43 43 H 1.08999 * 109.70895 * 173.46405 * 23 14 13 44 44 H 0.96705 * 113.99886 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0207 -0.6941 1.2018 6 6 2.4122 -1.2475 2.1604 7 6 2.8895 -1.9226 3.3295 8 8 2.1702 -2.0336 4.3038 9 7 4.1359 -2.4350 3.3501 10 6 4.6241 -3.1262 4.5459 11 1 3.8017 -3.6672 5.0139 12 6 5.1871 -2.1011 5.5331 13 6 5.6647 -2.8232 6.7970 14 7 6.6163 -3.8742 6.4093 15 6 7.8599 -3.9339 6.9793 16 1 8.6844 -4.3671 6.4325 17 6 8.0610 -3.4374 8.2599 18 7 7.0321 -3.2278 9.0535 19 14 9.7918 -3.0666 8.8568 20 1 10.1392 -1.6612 8.5257 21 1 9.8603 -3.2600 10.3276 22 1 10.7519 -3.9837 8.1917 23 6 6.2082 -4.8593 5.3984 24 6 5.7243 -4.1137 4.1507 25 1 6.5578 -3.5707 3.7052 26 8 5.2061 -5.0515 3.2050 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8901 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7217 -1.2492 36 1 4.7097 -2.3462 2.5731 37 1 6.0257 -1.5770 5.0747 38 1 4.4095 -1.3838 5.7958 39 1 6.1556 -2.1115 7.4609 40 1 4.8117 -3.2722 7.3057 41 1 7.1727 -2.8812 9.9485 42 1 5.3995 -5.4743 5.7931 43 1 7.0563 -5.4932 5.1394 44 1 5.8505 -5.7094 2.9099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099827351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:34 Heat of formation + Delta-G solvation = -27.376147 kcal Electronic energy + Delta-G solvation = -23556.833436 eV Core-core repulsion = 20089.752967 eV Total energy + Delta-G solvation = -3467.080469 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.75356 -38.01626 -37.69720 -35.42213 -34.33748 -32.53016 -31.74146 -29.96805 -28.57317 -27.67558 -27.66289 -25.54549 -23.76245 -22.35902 -21.75468 -20.70121 -19.69988 -18.26729 -17.06224 -16.58176 -16.16430 -15.97954 -14.99633 -14.84624 -14.63957 -14.45598 -14.40550 -13.93320 -13.65502 -13.23970 -12.87262 -12.80483 -12.76393 -12.31558 -12.12763 -12.09168 -12.07099 -11.63809 -11.58962 -11.58677 -11.13741 -10.89830 -10.77615 -10.46487 -10.40390 -10.34165 -10.25447 -10.06158 -9.93703 -9.75461 -9.51490 -8.80934 -8.47504 -6.79406 -5.85975 -3.30264 1.64558 2.28150 3.17772 3.34286 3.40856 3.42443 3.63528 4.08721 4.35815 4.50475 4.55088 4.57694 4.68623 5.18392 5.22898 5.24112 5.28860 5.31503 5.37863 5.46150 5.47296 5.47557 5.52877 5.66825 5.73375 5.75503 5.89383 5.90237 5.95188 6.08480 6.26788 6.46071 6.49435 6.65124 6.75655 6.80487 7.18869 7.27493 7.58931 7.65923 7.71908 7.90181 8.32746 8.36260 9.11669 9.74093 10.29879 11.22625 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.002984 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.267296 B = 9381.285808 C = 9655.231193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.085 4.085 6 C -0.209 4.209 7 C 0.628 3.372 8 O -0.525 6.525 9 N -0.702 5.702 10 C 0.162 3.838 11 H 0.091 0.909 12 C -0.148 4.148 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.260 4.260 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.057 0.943 26 O -0.571 6.571 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.399 0.601 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.025 0.975 41 H 0.256 0.744 42 H 0.030 0.970 43 H 0.061 0.939 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 5.647 -20.062 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 C -0.199 4.199 4 C -0.198 4.198 5 C -0.087 4.087 6 C -0.212 4.212 7 C 0.414 3.586 8 O -0.403 6.403 9 N -0.351 5.351 10 C 0.059 3.941 11 H 0.109 0.891 12 C -0.188 4.188 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.389 4.389 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.542 5.542 19 Si 0.735 3.265 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.006 4.006 24 C 0.019 3.981 25 H 0.075 0.925 26 O -0.375 6.375 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.647 5.938 -19.057 21.753 hybrid contribution 1.666 -0.100 -0.012 1.669 sum -6.982 5.838 -19.068 21.129 Atomic orbital electron populations 1.21910 0.92412 1.02894 1.02731 1.17900 0.95973 0.94345 0.87946 1.21900 1.01793 0.93384 1.02783 1.21903 1.01783 1.00659 0.95484 1.22442 0.97532 0.94576 0.94182 1.20945 1.02418 1.02156 0.95692 1.14714 0.81925 0.78233 0.83751 1.90862 1.56489 1.58282 1.34677 1.45962 1.13985 1.56631 1.18480 1.21105 0.96351 0.92122 0.84519 0.89087 1.22635 0.99919 0.97893 0.98379 1.20858 0.92131 0.91039 0.91470 1.44068 1.14225 1.27932 1.45009 1.19169 0.85299 1.38434 0.96044 0.91481 1.25076 0.97279 1.01761 0.95298 1.70035 1.28985 1.47899 1.07294 0.86259 0.84106 0.78415 0.77762 1.21339 1.21672 1.20404 1.21520 0.98066 0.91983 0.89066 1.22784 0.94465 0.89955 0.90893 0.92481 1.86489 1.42570 1.45991 1.62497 0.91858 0.91268 0.91927 0.91885 0.91205 0.91880 0.91927 0.91235 0.91882 0.76692 0.92200 0.91770 0.88746 0.95666 0.93395 0.95221 0.92068 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.43 37.16 0.31 -0.73 16 2 C 0.04 0.32 0.95 -157.30 -0.15 0.17 16 3 C -0.14 -0.99 8.43 37.15 0.31 -0.68 16 4 C -0.14 -0.95 8.43 37.16 0.31 -0.64 16 5 C -0.08 -1.04 11.77 -37.12 -0.44 -1.48 16 6 C -0.21 -3.13 13.61 -38.84 -0.53 -3.66 16 7 C 0.63 11.06 7.61 -14.34 -0.11 10.95 16 8 O -0.53 -11.23 16.75 5.27 0.09 -11.14 16 9 N -0.70 -11.27 4.91 -56.21 -0.28 -11.55 16 10 C 0.16 2.99 2.12 -67.89 -0.14 2.85 16 11 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 12 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 13 C 0.17 4.10 5.31 -3.67 -0.02 4.08 16 14 N -0.59 -14.36 3.00 -172.26 -0.52 -14.88 16 15 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16 16 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 17 C 0.01 0.14 4.91 -17.43 -0.09 0.06 16 18 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 19 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C 0.12 2.45 6.14 -3.70 -0.02 2.43 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.28 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 O -0.57 -8.59 13.16 -35.23 -0.46 -9.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.36 8.14 -51.94 -0.42 -0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.40 5.38 8.57 -40.82 -0.35 5.03 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 2.51 6.04 -51.92 -0.31 2.19 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 44 H 0.37 3.99 9.08 45.56 0.41 4.40 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -32.34 365.39 -7.53 -39.86 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.52 Total: 5.74 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.93 Total: 4.48 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.17 Total: -51.61 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.38 Total: -20.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.34 -7.53 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099827351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.486 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds