Wall clock time and date at job start Tue Mar 31 2020 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.53001 * 109.46651 * 240.00255 * 2 1 3 5 5 C 1.47201 * 109.47391 * 120.00816 * 2 1 3 6 6 C 2.64607 * 109.47407 * 120.00511 * 2 1 3 7 7 C 4.07802 * 109.47367 * 120.00439 * 2 1 3 8 8 O 1.21611 * 119.99759 * 308.20126 * 7 6 5 9 9 N 1.34771 * 119.99938 * 128.20227 * 7 6 5 10 10 C 1.46498 * 120.00391 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.45895 * 34.96976 * 10 9 7 12 12 C 1.53045 * 109.45800 * 275.00172 * 10 9 7 13 13 C 1.53197 * 109.33523 * 178.59334 * 12 10 9 14 14 N 1.46988 * 108.74054 * 54.62539 * 13 12 10 15 15 C 1.36931 * 120.62061 * 126.38474 * 14 13 12 16 16 H 1.08003 * 120.00549 * 207.69125 * 15 14 13 17 17 C 1.38814 * 119.99725 * 27.68301 * 15 14 13 18 18 N 1.31614 * 120.00044 * 17.35431 * 17 15 14 19 19 Si 1.86808 * 120.00100 * 197.35456 * 17 15 14 20 20 H 1.48505 * 109.46884 * 89.99975 * 19 17 15 21 21 H 1.48498 * 109.47378 * 210.00238 * 19 17 15 22 22 H 1.48504 * 109.47049 * 330.00189 * 19 17 15 23 23 C 1.46930 * 118.75483 * 306.40354 * 14 13 12 24 24 C 1.53034 * 109.46549 * 154.93387 * 10 9 7 25 25 H 1.08990 * 109.49953 * 61.43291 * 24 10 9 26 26 O 1.42905 * 109.49360 * 301.36891 * 24 10 9 27 27 H 1.09000 * 109.46779 * 299.99192 * 1 2 3 28 28 H 1.08988 * 109.47434 * 59.99835 * 1 2 3 29 29 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46847 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47277 * 300.00071 * 3 2 1 32 32 H 1.09001 * 109.47149 * 60.00709 * 3 2 1 33 33 H 1.09004 * 109.47695 * 299.99790 * 4 2 1 34 34 H 1.09001 * 109.47430 * 60.00135 * 4 2 1 35 35 H 1.09001 * 109.47333 * 180.02562 * 4 2 1 36 36 H 0.97003 * 120.00341 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.49819 * 298.55962 * 12 10 9 38 38 H 1.09001 * 109.49650 * 58.63046 * 12 10 9 39 39 H 1.09008 * 109.57889 * 174.43827 * 13 12 10 40 40 H 1.08995 * 109.59109 * 294.86129 * 13 12 10 41 41 H 0.97007 * 120.00009 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.58730 * 293.82478 * 23 14 13 43 43 H 1.08999 * 109.70895 * 173.46405 * 23 14 13 44 44 H 0.96705 * 113.99886 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0207 -0.6941 1.2018 6 6 2.4122 -1.2475 2.1604 7 6 2.8895 -1.9226 3.3295 8 8 2.1702 -2.0336 4.3038 9 7 4.1359 -2.4350 3.3501 10 6 4.6241 -3.1262 4.5459 11 1 3.8017 -3.6672 5.0139 12 6 5.1871 -2.1011 5.5331 13 6 5.6647 -2.8232 6.7970 14 7 6.6163 -3.8742 6.4093 15 6 7.8599 -3.9339 6.9793 16 1 8.6844 -4.3671 6.4325 17 6 8.0610 -3.4374 8.2599 18 7 7.0321 -3.2278 9.0535 19 14 9.7918 -3.0666 8.8568 20 1 10.1392 -1.6612 8.5257 21 1 9.8603 -3.2600 10.3276 22 1 10.7519 -3.9837 8.1917 23 6 6.2082 -4.8593 5.3984 24 6 5.7243 -4.1137 4.1507 25 1 6.5578 -3.5707 3.7052 26 8 5.2061 -5.0515 3.2050 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8901 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7217 -1.2492 36 1 4.7097 -2.3462 2.5731 37 1 6.0257 -1.5770 5.0747 38 1 4.4095 -1.3838 5.7958 39 1 6.1556 -2.1115 7.4609 40 1 4.8117 -3.2722 7.3057 41 1 7.1727 -2.8812 9.9485 42 1 5.3995 -5.4743 5.7931 43 1 7.0563 -5.4932 5.1394 44 1 5.8505 -5.7094 2.9099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099827351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:33 Heat of formation + Delta-G solvation = -50.620016 kcal Electronic energy + Delta-G solvation = -23557.841366 eV Core-core repulsion = 20089.752967 eV Total energy + Delta-G solvation = -3468.088399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21145 -39.48269 -38.46918 -37.00412 -35.87813 -33.99329 -33.24600 -31.67488 -30.21943 -28.20765 -28.18425 -27.31857 -25.21523 -23.95367 -23.29665 -21.83087 -21.31385 -19.61981 -18.75824 -18.06951 -17.57128 -16.99204 -16.73003 -16.22972 -15.91516 -15.68841 -15.25599 -15.20019 -15.16208 -14.98126 -14.54094 -13.93111 -13.70592 -13.35068 -13.32523 -13.29488 -13.00099 -12.75734 -12.73757 -12.61390 -12.46030 -12.27847 -12.26827 -12.14635 -12.07106 -11.91371 -11.69989 -11.33915 -11.27872 -11.24525 -11.07786 -10.59481 -10.19414 -8.78925 -7.91012 -5.38606 0.44915 1.19815 1.48677 1.50154 1.59033 1.94851 2.40912 2.48781 3.01980 3.12679 3.27111 3.59476 3.80643 3.95058 3.96311 3.98039 4.00931 4.18163 4.29274 4.36599 4.49243 4.62411 4.74417 4.75644 4.80593 4.84256 4.88395 4.96543 4.96722 4.98247 5.07271 5.10089 5.19998 5.29729 5.35367 5.35743 5.37654 5.58733 5.64578 6.13984 6.32598 6.34538 6.86430 7.00266 7.08277 7.76491 8.29397 9.16561 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.002984 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.267296 B = 9381.285808 C = 9655.231193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.031 3.969 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.037 4.037 6 C -0.267 4.267 7 C 0.630 3.370 8 O -0.575 6.575 9 N -0.687 5.687 10 C 0.168 3.832 11 H 0.060 0.940 12 C -0.131 4.131 13 C 0.180 3.820 14 N -0.604 5.604 15 C -0.265 4.265 16 H 0.079 0.921 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.118 3.882 24 C 0.103 3.897 25 H 0.077 0.923 26 O -0.572 6.572 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.415 0.585 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.065 0.935 40 H -0.007 1.007 41 H 0.251 0.749 42 H 0.013 0.987 43 H 0.079 0.921 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 6.328 -23.757 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 C -0.198 4.198 4 C -0.196 4.196 5 C -0.040 4.040 6 C -0.270 4.270 7 C 0.418 3.582 8 O -0.456 6.456 9 N -0.336 5.336 10 C 0.064 3.936 11 H 0.079 0.921 12 C -0.171 4.171 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.395 4.395 16 H 0.096 0.904 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.800 3.200 20 H -0.211 1.211 21 H -0.226 1.226 22 H -0.188 1.188 23 C -0.008 4.008 24 C 0.042 3.958 25 H 0.094 0.906 26 O -0.379 6.379 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.011 0.989 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.097 0.903 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.772 6.591 -22.831 25.002 hybrid contribution 1.323 -0.345 1.022 1.707 sum -6.449 6.246 -21.809 23.584 Atomic orbital electron populations 1.21949 0.91353 1.02874 1.03797 1.18337 0.96792 0.95034 0.86788 1.21932 1.01784 0.92229 1.03809 1.21927 1.01844 1.00492 0.95358 1.23416 0.94776 0.92037 0.93743 1.20523 1.05279 1.04671 0.96556 1.14986 0.81722 0.77581 0.83958 1.90828 1.57755 1.60277 1.36748 1.45696 1.13900 1.55826 1.18142 1.20794 0.95810 0.91990 0.85038 0.92142 1.22359 1.00013 0.97736 0.97009 1.20562 0.90728 0.90640 0.92686 1.44277 1.13814 1.29029 1.45706 1.19582 0.86398 1.37438 0.96072 0.90384 1.25897 1.00829 1.02271 0.95687 1.70206 1.31141 1.49472 1.07434 0.85203 0.79955 0.78297 0.76577 1.21112 1.22554 1.18801 1.21687 0.98261 0.91648 0.89244 1.22312 0.93973 0.89670 0.89851 0.90551 1.86462 1.43619 1.46398 1.61430 0.92798 0.88281 0.92537 0.91984 0.88353 0.92768 0.92439 0.88490 0.91866 0.74775 0.90904 0.92425 0.91665 0.98873 0.94006 0.96885 0.90263 0.75220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.43 71.98 0.61 -1.10 16 2 C 0.03 0.43 0.95 -53.99 -0.05 0.37 16 3 C -0.14 -1.54 8.43 71.98 0.61 -0.93 16 4 C -0.14 -1.39 8.43 71.98 0.61 -0.78 16 5 C -0.04 -0.86 11.77 31.13 0.37 -0.49 16 6 C -0.27 -7.95 13.61 30.01 0.41 -7.54 16 7 C 0.63 22.64 7.61 85.49 0.65 23.29 16 8 O -0.57 -25.76 16.75 -4.07 -0.07 -25.83 16 9 N -0.69 -21.79 4.91 -450.01 -2.21 -24.00 16 10 C 0.17 6.24 2.12 45.02 0.10 6.34 16 11 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 12 C -0.13 -5.34 5.65 30.68 0.17 -5.17 16 13 C 0.18 9.04 5.31 86.35 0.46 9.49 16 14 N -0.60 -29.82 3.00 -698.91 -2.09 -31.92 16 15 C -0.27 -14.08 9.59 84.03 0.81 -13.27 16 16 H 0.08 3.91 7.89 -2.91 -0.02 3.89 16 17 C -0.05 -2.82 4.91 84.86 0.42 -2.41 16 18 N -0.94 -55.73 11.19 21.65 0.24 -55.49 16 19 Si 0.97 43.93 29.59 68.60 2.03 45.96 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 C 0.12 4.71 6.14 86.36 0.53 5.24 16 24 C 0.10 3.36 3.14 30.67 0.10 3.45 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 O -0.57 -15.80 13.16 -148.98 -1.96 -17.76 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.42 10.50 8.57 -92.71 -0.79 9.70 16 37 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.07 3.64 6.04 -2.38 -0.01 3.63 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.08 2.85 7.94 -2.39 -0.02 2.83 16 44 H 0.40 7.11 9.08 -74.05 -0.67 6.44 16 Total: -1.00 -73.18 365.39 1.25 -71.94 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.46 Total: 20.59 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 5.77 Total: 16.51 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.06 Total: -111.41 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -2.03 Total: -43.58 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.18 1.25 -71.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099827351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.316 kcal (2) G-P(sol) polarization free energy of solvation -73.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds