Wall clock time and date at job start Tue Mar 31 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.51762 * 2 1 4 4 N 1.46501 * 109.47308 * 305.00512 * 3 2 1 5 5 C 1.34775 * 120.00414 * 179.97438 * 4 3 2 6 6 O 1.21622 * 119.99353 * 0.02562 * 5 4 3 7 7 C 1.47101 * 120.00429 * 179.72352 * 5 4 3 8 8 C 1.32987 * 120.00034 * 180.28107 * 7 5 4 9 9 C 1.50705 * 119.99834 * 180.02562 * 8 7 5 10 10 C 1.53000 * 117.49613 * 188.74397 * 9 8 7 11 11 C 1.52998 * 117.49871 * 120.08303 * 9 8 7 12 12 C 1.53300 * 109.51468 * 120.10679 * 2 1 3 13 13 N 1.47150 * 108.38211 * 67.66676 * 12 2 1 14 14 C 1.36936 * 120.98351 * 230.51325 * 13 12 2 15 15 H 1.07993 * 120.00039 * 153.74669 * 14 13 12 16 16 C 1.38816 * 119.99872 * 333.74969 * 14 13 12 17 17 N 1.31616 * 119.99904 * 160.04206 * 16 14 13 18 18 Si 1.86799 * 119.99834 * 340.03599 * 16 14 13 19 19 H 1.48503 * 109.47082 * 91.88799 * 18 16 14 20 20 H 1.48497 * 109.47175 * 211.89032 * 18 16 14 21 21 H 1.48505 * 109.47377 * 331.89123 * 18 16 14 22 22 C 1.47153 * 118.03567 * 50.53886 * 13 12 2 23 23 C 1.53296 * 108.38794 * 309.46317 * 22 13 12 24 24 O 1.42949 * 109.26369 * 52.27520 * 23 22 13 25 25 H 1.09000 * 109.46964 * 59.99126 * 1 2 3 26 26 H 1.08997 * 109.47432 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46679 * 300.00076 * 1 2 3 28 28 H 1.09002 * 109.47508 * 185.00174 * 3 2 1 29 29 H 1.09007 * 109.46625 * 65.00232 * 3 2 1 30 30 H 0.96998 * 119.99908 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.99581 * 0.27586 * 7 5 4 32 32 H 1.08006 * 120.00326 * 359.97438 * 8 7 5 33 33 H 1.08998 * 115.54783 * 334.40835 * 9 8 7 34 34 H 1.09002 * 117.50020 * 359.97438 * 10 9 8 35 35 H 1.09006 * 117.49668 * 145.01693 * 10 9 8 36 36 H 1.09001 * 117.49436 * 214.97254 * 11 9 8 37 37 H 1.08993 * 117.50153 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.67855 * 187.39273 * 12 2 1 39 39 H 1.09000 * 109.67633 * 307.91278 * 12 2 1 40 40 H 0.97007 * 119.99584 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.68202 * 69.18393 * 22 13 12 42 42 H 1.08998 * 109.68241 * 189.73680 * 22 13 12 43 43 H 1.08995 * 109.51643 * 172.22678 * 23 22 13 44 44 H 1.09007 * 109.50590 * 292.32833 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 7 1.4575 2.1671 -1.1314 5 6 1.7666 3.4634 -1.3328 6 8 2.5305 4.0310 -0.5756 7 6 1.1854 4.1897 -2.4723 8 6 1.4948 5.4672 -2.6743 9 6 0.8988 6.2114 -3.8413 10 6 1.4455 7.6085 -4.1417 11 6 0.0504 7.4467 -3.5326 12 6 2.0421 -0.7248 1.2500 13 7 1.6970 -2.1505 1.1338 14 6 1.0626 -2.8077 2.1541 15 1 0.4497 -3.6711 1.9416 16 6 1.2075 -2.3640 3.4614 17 7 0.3285 -2.7142 4.3763 18 14 2.6499 -1.2702 3.9221 19 1 2.2534 0.1546 3.7877 20 1 3.0491 -1.5426 5.3262 21 1 3.7940 -1.5528 3.0185 22 6 2.0541 -2.8494 -0.1110 23 6 1.5415 -2.0211 -1.2947 24 8 2.0075 -0.6759 -1.1659 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1275 1.4426 -0.0896 29 1 1.7532 1.9296 0.9315 30 1 0.8486 1.7142 -1.7355 31 1 0.5074 3.6854 -3.1449 32 1 2.1726 5.9716 -2.0014 33 1 0.6002 5.5948 -4.6891 34 1 2.2358 7.9895 -3.4950 35 1 1.5061 7.9112 -5.1872 36 1 -0.8060 7.6429 -4.1776 37 1 -0.0770 7.7208 -2.4855 38 1 3.1240 -0.6135 1.3214 39 1 1.5703 -0.3035 2.1377 40 1 0.4296 -2.4038 5.2899 41 1 3.1373 -2.9521 -0.1765 42 1 1.5899 -3.8355 -0.1245 43 1 1.9139 -2.4478 -2.2260 44 1 0.4515 -2.0300 -1.3003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107839673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:10 Heat of formation + Delta-G solvation = -9.353152 kcal Electronic energy + Delta-G solvation = -23987.366974 eV Core-core repulsion = 20521.068041 eV Total energy + Delta-G solvation = -3466.298933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.95773 -39.03244 -37.82243 -35.12474 -34.53891 -32.72689 -31.77541 -31.59949 -28.45165 -26.91775 -25.99142 -23.97497 -23.60248 -22.76536 -21.27944 -20.66593 -19.75859 -19.09180 -17.48517 -17.12717 -16.30740 -16.07240 -15.50852 -15.27448 -14.93932 -14.65933 -14.56796 -14.09600 -13.96263 -13.83982 -13.30928 -12.90094 -12.73936 -12.37201 -12.31798 -12.01760 -11.89465 -11.79335 -11.55721 -11.45414 -11.40560 -11.08379 -10.86637 -10.84121 -10.40024 -10.21424 -9.94736 -9.71979 -9.53440 -9.41341 -9.37716 -8.89492 -8.59935 -7.05154 -6.02355 -3.39583 1.18974 3.21019 3.27140 3.28917 3.45648 3.47732 3.60400 4.03084 4.28229 4.45863 4.48120 4.58637 4.73255 4.77372 4.97680 5.09972 5.18736 5.23375 5.24322 5.30222 5.39524 5.47375 5.69261 5.70766 5.72943 5.74905 5.82188 5.91181 5.97755 6.04676 6.14709 6.21480 6.23156 6.25989 6.43853 6.46151 6.54878 6.59560 6.74048 7.60679 7.62232 7.81242 8.23285 8.30076 8.81058 9.62076 9.98316 11.13129 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.003308 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.684450 B = 8463.411240 C = 8993.961125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 C 0.135 3.865 4 N -0.712 5.712 5 C 0.542 3.458 6 O -0.552 6.552 7 C -0.207 4.207 8 C -0.041 4.041 9 C -0.139 4.139 10 C -0.172 4.172 11 C -0.167 4.167 12 C 0.108 3.892 13 N -0.604 5.604 14 C -0.261 4.261 15 H 0.088 0.912 16 C 0.026 3.974 17 N -0.906 5.906 18 Si 0.878 3.122 19 H -0.286 1.286 20 H -0.301 1.301 21 H -0.269 1.269 22 C 0.112 3.888 23 C 0.044 3.956 24 O -0.380 6.380 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.404 0.596 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.264 0.736 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 14.347 -17.603 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 C 0.011 3.989 4 N -0.363 5.363 5 C 0.330 3.670 6 O -0.432 6.432 7 C -0.227 4.227 8 C -0.060 4.060 9 C -0.157 4.157 10 C -0.209 4.209 11 C -0.204 4.204 12 C -0.018 4.018 13 N -0.328 5.328 14 C -0.389 4.389 15 H 0.106 0.894 16 C -0.174 4.174 17 N -0.548 5.548 18 Si 0.708 3.292 19 H -0.214 1.214 20 H -0.229 1.229 21 H -0.194 1.194 22 C -0.013 4.013 23 C -0.034 4.034 24 O -0.299 6.299 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.239 0.761 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.196 14.756 -16.982 22.498 hybrid contribution 0.320 0.067 0.315 0.454 sum 0.124 14.822 -16.667 22.305 Atomic orbital electron populations 1.22226 0.94868 1.03887 1.01205 1.22245 0.94179 0.90448 0.88374 1.21371 0.98890 0.89321 0.89359 1.45871 1.48754 1.10907 1.30756 1.18562 0.81326 0.81856 0.85260 1.90784 1.36568 1.68123 1.47752 1.22521 1.04261 0.96318 0.99644 1.23033 0.94475 0.94155 0.94368 1.21327 1.04881 0.90607 0.98923 1.23031 0.97426 0.98185 1.02234 1.22999 0.94688 1.00162 1.02513 1.21915 0.98126 0.85901 0.95901 1.44305 1.69229 1.03810 1.15474 1.18881 1.22287 1.13061 0.84665 0.89394 1.25244 0.97908 0.98644 0.95583 1.69816 1.34264 1.47683 1.03061 0.87058 0.85188 0.79910 0.77042 1.21356 1.22884 1.19449 1.21633 0.97810 0.95661 0.86238 1.23082 0.98830 0.82714 0.98796 1.87852 1.72924 1.25986 1.43147 0.93390 0.90244 0.91573 0.90713 0.90010 0.76058 0.85625 0.85461 0.86739 0.88276 0.88282 0.88194 0.88299 0.94614 0.89914 0.92625 0.95130 0.91006 0.89646 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 7.87 37.16 0.29 -2.41 16 2 C 0.09 1.57 0.78 -90.47 -0.07 1.50 16 3 C 0.13 2.22 4.85 -4.04 -0.02 2.20 16 4 N -0.71 -9.95 5.19 -61.49 -0.32 -10.27 16 5 C 0.54 7.90 7.76 -12.67 -0.10 7.80 16 6 O -0.55 -10.13 16.22 5.26 0.09 -10.04 16 7 C -0.21 -2.23 9.67 -37.81 -0.37 -2.59 16 8 C -0.04 -0.40 9.24 -36.13 -0.33 -0.74 16 9 C -0.14 -1.04 6.00 -91.77 -0.55 -1.59 16 10 C -0.17 -1.09 10.24 -26.69 -0.27 -1.36 16 11 C -0.17 -1.08 10.24 -26.69 -0.27 -1.35 16 12 C 0.11 2.34 3.05 -3.53 -0.01 2.33 16 13 N -0.60 -13.95 2.36 -171.83 -0.40 -14.35 16 14 C -0.26 -7.07 10.10 -15.06 -0.15 -7.22 16 15 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 16 C 0.03 0.73 5.26 -17.43 -0.09 0.63 16 17 N -0.91 -27.24 13.97 55.49 0.78 -26.47 16 18 Si 0.88 22.25 24.28 -169.99 -4.13 18.12 16 19 H -0.29 -6.97 6.58 56.52 0.37 -6.60 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 21 H -0.27 -6.79 6.54 56.52 0.37 -6.42 16 22 C 0.11 2.14 6.74 -3.53 -0.02 2.12 16 23 C 0.04 0.69 6.60 37.31 0.25 0.94 16 24 O -0.38 -6.52 10.17 -35.23 -0.36 -6.88 16 25 H 0.05 0.64 6.58 -51.93 -0.34 0.30 16 26 H 0.08 1.45 6.12 -51.93 -0.32 1.13 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.40 4.80 6.97 -40.82 -0.28 4.52 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.42 7.49 -52.48 -0.39 1.02 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.80 6.86 -51.93 -0.36 0.45 16 39 H 0.08 1.94 4.60 -51.93 -0.24 1.70 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.84 6.26 -51.92 -0.32 0.51 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -32.18 349.49 -7.75 -39.93 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.94 Total: 4.42 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.73 Total: 0.27 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.05 Total: -51.09 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.27 Total: -16.92 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.13 Total: 18.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.18 -7.75 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.577 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds