Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.51762 * 2 1 4 4 N 1.46501 * 109.47308 * 305.00512 * 3 2 1 5 5 C 1.34775 * 120.00414 * 179.97438 * 4 3 2 6 6 O 1.21622 * 119.99353 * 0.02562 * 5 4 3 7 7 C 1.47101 * 120.00429 * 179.72352 * 5 4 3 8 8 C 1.32987 * 120.00034 * 180.28107 * 7 5 4 9 9 C 1.50705 * 119.99834 * 180.02562 * 8 7 5 10 10 C 1.53000 * 117.49613 * 188.74397 * 9 8 7 11 11 C 1.52998 * 117.49871 * 120.08303 * 9 8 7 12 12 C 1.53300 * 109.51468 * 120.10679 * 2 1 3 13 13 N 1.47150 * 108.38211 * 67.66676 * 12 2 1 14 14 C 1.36936 * 120.98351 * 230.51325 * 13 12 2 15 15 H 1.07993 * 120.00039 * 153.74669 * 14 13 12 16 16 C 1.38816 * 119.99872 * 333.74969 * 14 13 12 17 17 N 1.31616 * 119.99904 * 160.04206 * 16 14 13 18 18 Si 1.86799 * 119.99834 * 340.03599 * 16 14 13 19 19 H 1.48503 * 109.47082 * 91.88799 * 18 16 14 20 20 H 1.48497 * 109.47175 * 211.89032 * 18 16 14 21 21 H 1.48505 * 109.47377 * 331.89123 * 18 16 14 22 22 C 1.47153 * 118.03567 * 50.53886 * 13 12 2 23 23 C 1.53296 * 108.38794 * 309.46317 * 22 13 12 24 24 O 1.42949 * 109.26369 * 52.27520 * 23 22 13 25 25 H 1.09000 * 109.46964 * 59.99126 * 1 2 3 26 26 H 1.08997 * 109.47432 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46679 * 300.00076 * 1 2 3 28 28 H 1.09002 * 109.47508 * 185.00174 * 3 2 1 29 29 H 1.09007 * 109.46625 * 65.00232 * 3 2 1 30 30 H 0.96998 * 119.99908 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.99581 * 0.27586 * 7 5 4 32 32 H 1.08006 * 120.00326 * 359.97438 * 8 7 5 33 33 H 1.08998 * 115.54783 * 334.40835 * 9 8 7 34 34 H 1.09002 * 117.50020 * 359.97438 * 10 9 8 35 35 H 1.09006 * 117.49668 * 145.01693 * 10 9 8 36 36 H 1.09001 * 117.49436 * 214.97254 * 11 9 8 37 37 H 1.08993 * 117.50153 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.67855 * 187.39273 * 12 2 1 39 39 H 1.09000 * 109.67633 * 307.91278 * 12 2 1 40 40 H 0.97007 * 119.99584 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.68202 * 69.18393 * 22 13 12 42 42 H 1.08998 * 109.68241 * 189.73680 * 22 13 12 43 43 H 1.08995 * 109.51643 * 172.22678 * 23 22 13 44 44 H 1.09007 * 109.50590 * 292.32833 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 7 1.4575 2.1671 -1.1314 5 6 1.7666 3.4634 -1.3328 6 8 2.5305 4.0310 -0.5756 7 6 1.1854 4.1897 -2.4723 8 6 1.4948 5.4672 -2.6743 9 6 0.8988 6.2114 -3.8413 10 6 1.4455 7.6085 -4.1417 11 6 0.0504 7.4467 -3.5326 12 6 2.0421 -0.7248 1.2500 13 7 1.6970 -2.1505 1.1338 14 6 1.0626 -2.8077 2.1541 15 1 0.4497 -3.6711 1.9416 16 6 1.2075 -2.3640 3.4614 17 7 0.3285 -2.7142 4.3763 18 14 2.6499 -1.2702 3.9221 19 1 2.2534 0.1546 3.7877 20 1 3.0491 -1.5426 5.3262 21 1 3.7940 -1.5528 3.0185 22 6 2.0541 -2.8494 -0.1110 23 6 1.5415 -2.0211 -1.2947 24 8 2.0075 -0.6759 -1.1659 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1275 1.4426 -0.0896 29 1 1.7532 1.9296 0.9315 30 1 0.8486 1.7142 -1.7355 31 1 0.5074 3.6854 -3.1449 32 1 2.1726 5.9716 -2.0014 33 1 0.6002 5.5948 -4.6891 34 1 2.2358 7.9895 -3.4950 35 1 1.5061 7.9112 -5.1872 36 1 -0.8060 7.6429 -4.1776 37 1 -0.0770 7.7208 -2.4855 38 1 3.1240 -0.6135 1.3214 39 1 1.5703 -0.3035 2.1377 40 1 0.4296 -2.4038 5.2899 41 1 3.1373 -2.9521 -0.1765 42 1 1.5899 -3.8355 -0.1245 43 1 1.9139 -2.4478 -2.2260 44 1 0.4515 -2.0300 -1.3003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107839673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -31.381927 kcal Electronic energy + Delta-G solvation = -23988.322213 eV Core-core repulsion = 20521.068041 eV Total energy + Delta-G solvation = -3467.254173 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27686 -40.33328 -38.42801 -36.71188 -36.02993 -33.71284 -33.64247 -32.98312 -29.98953 -28.27473 -27.64047 -25.33079 -24.93447 -23.23074 -22.77263 -21.69445 -20.78487 -20.43865 -19.05521 -18.49801 -17.71078 -17.24615 -17.01668 -16.29695 -16.20221 -15.98668 -15.91032 -15.67198 -15.44332 -15.08939 -14.63470 -14.30145 -14.06443 -13.93244 -13.59173 -13.51813 -13.09614 -13.05899 -12.72094 -12.58612 -12.39073 -12.37337 -12.24020 -12.10098 -12.02496 -11.64521 -11.41406 -11.28193 -11.06784 -10.97797 -10.50887 -10.30726 -9.93531 -8.96790 -8.21818 -5.53784 0.32194 1.23205 1.36080 1.42489 2.12338 2.24848 2.34535 2.65515 2.97234 3.03864 3.20994 3.57472 3.74818 3.83546 3.88285 3.96178 4.03065 4.11744 4.21542 4.27897 4.40425 4.42940 4.45111 4.50515 4.57458 4.61476 4.70544 4.80027 4.80422 4.87493 5.01542 5.03919 5.11612 5.13112 5.25800 5.29446 5.34573 5.39245 5.47705 5.77014 6.07099 6.22676 6.54589 6.79865 7.20259 7.52527 7.93985 8.97438 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.003308 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.684450 B = 8463.411240 C = 8993.961125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C 0.141 3.859 4 N -0.701 5.701 5 C 0.537 3.463 6 O -0.598 6.598 7 C -0.215 4.215 8 C -0.030 4.030 9 C -0.147 4.147 10 C -0.170 4.170 11 C -0.163 4.163 12 C 0.102 3.898 13 N -0.616 5.616 14 C -0.241 4.241 15 H 0.064 0.936 16 C -0.027 4.027 17 N -0.951 5.951 18 Si 0.930 3.070 19 H -0.275 1.275 20 H -0.309 1.309 21 H -0.268 1.268 22 C 0.104 3.896 23 C 0.050 3.950 24 O -0.377 6.377 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.417 0.583 31 H 0.159 0.841 32 H 0.108 0.892 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.062 0.938 40 H 0.262 0.738 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 15.708 -20.921 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.061 3.939 3 C 0.016 3.984 4 N -0.353 5.353 5 C 0.328 3.672 6 O -0.482 6.482 7 C -0.235 4.235 8 C -0.050 4.050 9 C -0.165 4.165 10 C -0.207 4.207 11 C -0.200 4.200 12 C -0.024 4.024 13 N -0.341 5.341 14 C -0.370 4.370 15 H 0.082 0.918 16 C -0.222 4.222 17 N -0.597 5.597 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.238 1.238 21 H -0.192 1.192 22 C -0.021 4.021 23 C -0.027 4.027 24 O -0.296 6.296 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.255 0.745 31 H 0.177 0.823 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.456 16.117 -20.369 25.978 hybrid contribution 0.412 -0.374 1.262 1.379 sum -0.044 15.743 -19.107 24.758 Atomic orbital electron populations 1.22164 0.93733 1.03139 1.02554 1.21949 0.94811 0.90469 0.86670 1.21111 0.98361 0.88844 0.90099 1.45709 1.48657 1.10794 1.30110 1.19212 0.80573 0.81741 0.85662 1.90763 1.38764 1.68993 1.49639 1.22499 1.05531 0.96441 0.99078 1.23179 0.93234 0.94050 0.94524 1.21382 1.05674 0.91062 0.98393 1.23137 0.97288 0.97128 1.03161 1.23086 0.95350 0.98990 1.02581 1.21913 0.97541 0.85523 0.97406 1.44414 1.69174 1.04704 1.15839 1.18843 1.20793 1.11782 0.85617 0.91813 1.25747 0.99850 1.00787 0.95856 1.69920 1.36069 1.50299 1.03369 0.86199 0.82577 0.79201 0.76046 1.20222 1.23759 1.19244 1.21890 0.98138 0.96400 0.85641 1.23161 0.99342 0.81508 0.98723 1.87873 1.73063 1.26502 1.42191 0.89737 0.91960 0.92584 0.91780 0.90965 0.74522 0.82348 0.87393 0.84967 0.88804 0.86611 0.86465 0.89015 0.95365 0.92027 0.92882 0.94882 0.90593 0.85695 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 7.87 71.98 0.57 -4.34 16 2 C 0.10 3.44 0.78 -10.69 -0.01 3.44 16 3 C 0.14 4.50 4.85 86.38 0.42 4.92 16 4 N -0.70 -18.16 5.19 -466.69 -2.42 -20.58 16 5 C 0.54 14.97 7.76 86.57 0.67 15.65 16 6 O -0.60 -21.97 16.22 -4.10 -0.07 -22.04 16 7 C -0.22 -4.12 9.67 23.43 0.23 -3.90 16 8 C -0.03 -0.54 9.24 24.52 0.23 -0.32 16 9 C -0.15 -1.77 6.00 -11.54 -0.07 -1.84 16 10 C -0.17 -1.74 10.24 30.62 0.31 -1.43 16 11 C -0.16 -1.68 10.24 30.62 0.31 -1.36 16 12 C 0.10 4.38 3.05 86.36 0.26 4.64 16 13 N -0.62 -28.19 2.36 -697.54 -1.64 -29.83 16 14 C -0.24 -13.23 10.10 84.03 0.85 -12.38 16 15 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 16 C -0.03 -1.56 5.26 84.86 0.45 -1.12 16 17 N -0.95 -58.84 13.97 21.65 0.30 -58.54 16 18 Si 0.93 46.99 24.28 68.60 1.67 48.66 16 19 H -0.28 -13.27 6.58 99.48 0.65 -12.61 16 20 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 21 H -0.27 -13.24 6.54 99.48 0.65 -12.59 16 22 C 0.10 3.78 6.74 86.35 0.58 4.37 16 23 C 0.05 1.42 6.60 72.08 0.48 1.90 16 24 O -0.38 -11.81 10.17 -148.98 -1.52 -13.32 16 25 H 0.08 1.97 6.58 -2.39 -0.02 1.95 16 26 H 0.06 2.16 6.12 -2.39 -0.01 2.15 16 27 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.42 8.49 6.97 -92.71 -0.65 7.84 16 31 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.11 2.38 7.49 -2.91 -0.02 2.36 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 39 H 0.06 2.90 4.60 -2.39 -0.01 2.89 16 40 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 41 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 2.68 7.96 -2.39 -0.02 2.66 16 43 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.06 1.68 6.26 -2.38 -0.01 1.66 16 Total: -1.00 -71.38 349.49 1.84 -69.54 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.24 Total: 17.88 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.28 Total: 8.23 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.76 Total: -108.95 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.58 Total: -35.36 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.67 Total: 48.66 kcal Total: -71.38 1.84 -69.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.157 kcal (2) G-P(sol) polarization free energy of solvation -71.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds