Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.55147 * 2 1 4 4 N 1.46499 * 109.47060 * 60.13157 * 3 2 1 5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21611 * 119.99604 * 359.97438 * 5 4 3 7 7 C 1.47097 * 120.00079 * 179.97438 * 5 4 3 8 8 C 1.32996 * 120.00048 * 179.97438 * 7 5 4 9 9 C 1.50694 * 119.99838 * 179.97438 * 8 7 5 10 10 C 1.52997 * 117.49762 * 188.62404 * 9 8 7 11 11 C 1.53001 * 60.00181 * 252.50794 * 10 9 8 12 12 C 1.53290 * 109.50882 * 239.87287 * 2 1 3 13 13 N 1.47232 * 108.40967 * 292.38059 * 12 2 1 14 14 C 1.36937 * 121.03256 * 129.46000 * 13 12 2 15 15 H 1.07999 * 119.99830 * 333.77469 * 14 13 12 16 16 C 1.38814 * 119.99671 * 153.77042 * 14 13 12 17 17 N 1.31617 * 119.99660 * 160.02496 * 16 14 13 18 18 Si 1.86793 * 120.00266 * 340.02129 * 16 14 13 19 19 H 1.48503 * 109.46760 * 91.88567 * 18 16 14 20 20 H 1.48497 * 109.47347 * 211.88792 * 18 16 14 21 21 H 1.48498 * 109.47201 * 331.89168 * 18 16 14 22 22 C 1.47155 * 117.98347 * 309.49012 * 13 12 2 23 23 C 1.53294 * 108.41729 * 50.51829 * 22 13 12 24 24 O 1.42960 * 109.50970 * 120.12955 * 2 1 3 25 25 H 1.08996 * 109.46656 * 299.86994 * 1 2 3 26 26 H 1.08998 * 109.46877 * 59.87220 * 1 2 3 27 27 H 1.09001 * 109.46700 * 179.87487 * 1 2 3 28 28 H 1.09004 * 109.46468 * 180.12711 * 3 2 1 29 29 H 1.08996 * 109.47418 * 300.12428 * 3 2 1 30 30 H 0.96992 * 120.00094 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.99845 * 359.97438 * 7 5 4 32 32 H 1.07994 * 119.99760 * 359.97438 * 8 7 5 33 33 H 1.09003 * 115.55156 * 334.33298 * 9 8 7 34 34 H 1.08999 * 117.50298 * 0.02562 * 10 9 8 35 35 H 1.09002 * 117.49992 * 145.02564 * 10 9 8 36 36 H 1.08998 * 117.50183 * 252.51178 * 11 10 9 37 37 H 1.09003 * 117.49329 * 107.48378 * 11 10 9 38 38 H 1.09001 * 109.68378 * 52.10405 * 12 2 1 39 39 H 1.09000 * 109.68200 * 172.65533 * 12 2 1 40 40 H 0.97002 * 120.00062 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.68049 * 290.77118 * 22 13 12 42 42 H 1.09003 * 109.67731 * 170.25941 * 22 13 12 43 43 H 1.08998 * 109.51349 * 67.59796 * 23 22 13 44 44 H 1.08996 * 109.51070 * 187.70400 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5573 2.1321 1.1977 5 6 1.8848 3.4220 1.4110 6 8 2.5831 4.0126 0.6094 7 6 1.3976 4.1154 2.6134 8 6 1.7212 5.3881 2.8241 9 6 1.2216 6.0986 4.0555 10 6 1.4549 7.6081 4.1437 11 6 2.2677 6.6557 5.0231 12 6 2.0420 -0.7252 -1.2497 13 7 1.6959 -2.1516 -1.1341 14 6 1.0612 -2.8090 -2.1540 15 1 0.4409 -2.2599 -2.8468 16 6 1.2152 -4.1811 -2.2972 17 7 0.3375 -4.8727 -2.9927 18 14 2.6681 -5.0459 -1.5032 19 1 2.2821 -5.5212 -0.1503 20 1 3.0712 -6.2052 -2.3389 21 1 3.8059 -4.0985 -1.3890 22 6 2.0522 -2.8498 0.1114 23 6 1.5396 -2.0211 1.2948 24 8 2.0075 -0.6764 1.1655 25 1 -0.3632 0.5118 0.8911 26 1 -0.3633 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0022 28 1 3.1321 1.4401 -0.0023 29 1 1.6777 1.9568 -0.8888 30 1 1.0001 1.6612 1.8369 31 1 0.7772 3.5910 3.3250 32 1 2.3419 5.9123 2.1126 33 1 0.2991 5.7057 4.4833 34 1 1.9694 8.0874 3.3109 35 1 0.6859 8.2087 4.6296 36 1 2.0334 6.6297 6.0873 37 1 3.3174 6.5083 4.7687 38 1 1.5704 -0.3041 -2.1376 39 1 3.1241 -0.6148 -1.3208 40 1 0.4453 -5.8314 -3.0932 41 1 3.1352 -2.9533 0.1773 42 1 1.5877 -3.8358 0.1251 43 1 0.4497 -2.0284 1.2994 44 1 1.9106 -2.4485 2.2263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107839674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = -10.229655 kcal Electronic energy + Delta-G solvation = -23768.689141 eV Core-core repulsion = 20302.352200 eV Total energy + Delta-G solvation = -3466.336941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97115 -39.04702 -37.84833 -35.22073 -34.44839 -32.76615 -32.01181 -31.39264 -28.43521 -26.93768 -26.13556 -24.07957 -23.17336 -22.78190 -21.64237 -20.68868 -19.81570 -19.01708 -17.50184 -16.93447 -16.48606 -15.95686 -15.56954 -15.39126 -14.91859 -14.83328 -14.41358 -14.12414 -13.97726 -13.84865 -13.38395 -12.90229 -12.77984 -12.43887 -12.30949 -12.02457 -11.88987 -11.83213 -11.61383 -11.48219 -11.45842 -11.02729 -10.86453 -10.83512 -10.39930 -10.31347 -9.95101 -9.68532 -9.55952 -9.42699 -9.40356 -8.92532 -8.60764 -7.05564 -6.02016 -3.39254 1.16202 3.20879 3.22112 3.25341 3.44164 3.47132 3.58755 4.01063 4.26652 4.45700 4.46129 4.56905 4.72651 4.75092 4.95452 5.07530 5.15331 5.21832 5.22508 5.27626 5.37025 5.45577 5.67182 5.68881 5.72114 5.76041 5.81067 5.86442 5.96638 6.05253 6.12342 6.19314 6.22075 6.22287 6.44186 6.46667 6.51707 6.55533 6.71978 7.57973 7.60370 7.81250 8.23165 8.26708 8.81283 9.62184 9.98252 11.13518 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041856 B = 0.002798 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.803072 B =10006.207436 C =10174.714752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 C 0.138 3.862 4 N -0.712 5.712 5 C 0.542 3.458 6 O -0.553 6.553 7 C -0.208 4.208 8 C -0.040 4.040 9 C -0.140 4.140 10 C -0.172 4.172 11 C -0.167 4.167 12 C 0.131 3.869 13 N -0.604 5.604 14 C -0.260 4.260 15 H 0.089 0.911 16 C 0.023 3.977 17 N -0.907 5.907 18 Si 0.884 3.116 19 H -0.289 1.289 20 H -0.302 1.302 21 H -0.271 1.271 22 C 0.089 3.911 23 C 0.046 3.954 24 O -0.380 6.380 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.404 0.596 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 18.523 15.481 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 C 0.014 3.986 4 N -0.362 5.362 5 C 0.331 3.669 6 O -0.433 6.433 7 C -0.228 4.228 8 C -0.060 4.060 9 C -0.158 4.158 10 C -0.209 4.209 11 C -0.204 4.204 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.388 4.388 15 H 0.106 0.894 16 C -0.176 4.176 17 N -0.549 5.549 18 Si 0.715 3.285 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.196 1.196 22 C -0.037 4.037 23 C -0.032 4.032 24 O -0.299 6.299 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.240 0.760 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.888 18.817 14.913 24.026 hybrid contribution 0.313 -1.229 0.535 1.376 sum 1.201 17.588 15.448 23.440 Atomic orbital electron populations 1.22260 0.95048 1.03916 1.01225 1.22233 0.94015 0.90555 0.88652 1.21349 0.99926 0.89629 0.87706 1.45824 1.53257 1.11605 1.25561 1.18540 0.80330 0.81780 0.86256 1.90778 1.38701 1.66479 1.47357 1.22531 1.05362 0.96387 0.98569 1.23028 0.94189 0.94211 0.94535 1.21331 1.01080 0.96179 0.97217 1.23019 1.03360 0.91529 1.02949 1.22989 0.97284 1.03245 0.96845 1.21478 0.97748 0.85464 0.94919 1.44324 1.69277 1.05726 1.13517 1.18892 1.21743 0.91103 1.07026 0.89386 1.25245 0.97986 0.96489 0.97852 1.69818 1.34326 1.07094 1.43706 0.86967 0.85174 0.78873 0.77507 1.21640 1.23060 1.19563 1.22028 0.98203 0.96790 0.86661 1.23087 0.98974 0.82480 0.98684 1.87842 1.72846 1.26076 1.43152 0.93329 0.91746 0.90215 0.90790 0.90000 0.76028 0.85637 0.85459 0.86729 0.88266 0.88281 0.88190 0.88308 0.90792 0.94823 0.92664 0.94829 0.90103 0.92564 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 7.92 37.16 0.29 -2.24 16 2 C 0.09 1.40 0.76 -90.47 -0.07 1.33 16 3 C 0.14 2.01 4.82 -4.04 -0.02 1.99 16 4 N -0.71 -9.19 5.15 -61.49 -0.32 -9.51 16 5 C 0.54 7.41 7.76 -12.66 -0.10 7.31 16 6 O -0.55 -9.53 16.22 5.27 0.09 -9.44 16 7 C -0.21 -2.12 9.67 -37.81 -0.37 -2.48 16 8 C -0.04 -0.38 9.24 -36.13 -0.33 -0.71 16 9 C -0.14 -0.99 6.01 -91.77 -0.55 -1.54 16 10 C -0.17 -1.03 10.23 -26.73 -0.27 -1.30 16 11 C -0.17 -1.02 10.23 -26.73 -0.27 -1.30 16 12 C 0.13 2.53 5.41 -3.49 -0.02 2.51 16 13 N -0.60 -13.91 2.35 -171.76 -0.40 -14.31 16 14 C -0.26 -7.02 10.10 -15.06 -0.15 -7.18 16 15 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 16 C 0.02 0.66 5.26 -17.43 -0.09 0.57 16 17 N -0.91 -27.21 13.97 55.49 0.78 -26.44 16 18 Si 0.88 22.06 24.28 -169.99 -4.13 17.93 16 19 H -0.29 -6.87 6.58 56.52 0.37 -6.50 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 22 C 0.09 1.89 4.38 -3.53 -0.02 1.87 16 23 C 0.05 0.79 6.60 37.31 0.25 1.03 16 24 O -0.38 -6.45 9.97 -35.23 -0.35 -6.80 16 25 H 0.05 0.62 6.88 -51.93 -0.36 0.26 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.42 6.11 -51.93 -0.32 1.10 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.40 4.55 7.19 -40.82 -0.29 4.26 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.34 7.49 -52.49 -0.39 0.94 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.39 7.96 -51.93 -0.41 0.98 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.03 0.74 6.86 -51.93 -0.36 0.38 16 42 H 0.08 1.85 4.60 -51.93 -0.24 1.61 16 43 H 0.06 0.95 6.25 -51.93 -0.32 0.63 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -32.00 349.76 -7.76 -39.75 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.96 Total: 3.68 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.72 Total: -0.13 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.05 Total: -50.26 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.27 Total: -16.24 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.13 Total: 17.93 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.00 -7.76 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.525 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds