Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.55147 * 2 1 4 4 N 1.46499 * 109.47060 * 60.13157 * 3 2 1 5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21611 * 119.99604 * 359.97438 * 5 4 3 7 7 C 1.47097 * 120.00079 * 179.97438 * 5 4 3 8 8 C 1.32996 * 120.00048 * 179.97438 * 7 5 4 9 9 C 1.50694 * 119.99838 * 179.97438 * 8 7 5 10 10 C 1.52997 * 117.49762 * 188.62404 * 9 8 7 11 11 C 1.53001 * 60.00181 * 252.50794 * 10 9 8 12 12 C 1.53290 * 109.50882 * 239.87287 * 2 1 3 13 13 N 1.47232 * 108.40967 * 292.38059 * 12 2 1 14 14 C 1.36937 * 121.03256 * 129.46000 * 13 12 2 15 15 H 1.07999 * 119.99830 * 333.77469 * 14 13 12 16 16 C 1.38814 * 119.99671 * 153.77042 * 14 13 12 17 17 N 1.31617 * 119.99660 * 160.02496 * 16 14 13 18 18 Si 1.86793 * 120.00266 * 340.02129 * 16 14 13 19 19 H 1.48503 * 109.46760 * 91.88567 * 18 16 14 20 20 H 1.48497 * 109.47347 * 211.88792 * 18 16 14 21 21 H 1.48498 * 109.47201 * 331.89168 * 18 16 14 22 22 C 1.47155 * 117.98347 * 309.49012 * 13 12 2 23 23 C 1.53294 * 108.41729 * 50.51829 * 22 13 12 24 24 O 1.42960 * 109.50970 * 120.12955 * 2 1 3 25 25 H 1.08996 * 109.46656 * 299.86994 * 1 2 3 26 26 H 1.08998 * 109.46877 * 59.87220 * 1 2 3 27 27 H 1.09001 * 109.46700 * 179.87487 * 1 2 3 28 28 H 1.09004 * 109.46468 * 180.12711 * 3 2 1 29 29 H 1.08996 * 109.47418 * 300.12428 * 3 2 1 30 30 H 0.96992 * 120.00094 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.99845 * 359.97438 * 7 5 4 32 32 H 1.07994 * 119.99760 * 359.97438 * 8 7 5 33 33 H 1.09003 * 115.55156 * 334.33298 * 9 8 7 34 34 H 1.08999 * 117.50298 * 0.02562 * 10 9 8 35 35 H 1.09002 * 117.49992 * 145.02564 * 10 9 8 36 36 H 1.08998 * 117.50183 * 252.51178 * 11 10 9 37 37 H 1.09003 * 117.49329 * 107.48378 * 11 10 9 38 38 H 1.09001 * 109.68378 * 52.10405 * 12 2 1 39 39 H 1.09000 * 109.68200 * 172.65533 * 12 2 1 40 40 H 0.97002 * 120.00062 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.68049 * 290.77118 * 22 13 12 42 42 H 1.09003 * 109.67731 * 170.25941 * 22 13 12 43 43 H 1.08998 * 109.51349 * 67.59796 * 23 22 13 44 44 H 1.08996 * 109.51070 * 187.70400 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5573 2.1321 1.1977 5 6 1.8848 3.4220 1.4110 6 8 2.5831 4.0126 0.6094 7 6 1.3976 4.1154 2.6134 8 6 1.7212 5.3881 2.8241 9 6 1.2216 6.0986 4.0555 10 6 1.4549 7.6081 4.1437 11 6 2.2677 6.6557 5.0231 12 6 2.0420 -0.7252 -1.2497 13 7 1.6959 -2.1516 -1.1341 14 6 1.0612 -2.8090 -2.1540 15 1 0.4409 -2.2599 -2.8468 16 6 1.2152 -4.1811 -2.2972 17 7 0.3375 -4.8727 -2.9927 18 14 2.6681 -5.0459 -1.5032 19 1 2.2821 -5.5212 -0.1503 20 1 3.0712 -6.2052 -2.3389 21 1 3.8059 -4.0985 -1.3890 22 6 2.0522 -2.8498 0.1114 23 6 1.5396 -2.0211 1.2948 24 8 2.0075 -0.6764 1.1655 25 1 -0.3632 0.5118 0.8911 26 1 -0.3633 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0022 28 1 3.1321 1.4401 -0.0023 29 1 1.6777 1.9568 -0.8888 30 1 1.0001 1.6612 1.8369 31 1 0.7772 3.5910 3.3250 32 1 2.3419 5.9123 2.1126 33 1 0.2991 5.7057 4.4833 34 1 1.9694 8.0874 3.3109 35 1 0.6859 8.2087 4.6296 36 1 2.0334 6.6297 6.0873 37 1 3.3174 6.5083 4.7687 38 1 1.5704 -0.3041 -2.1376 39 1 3.1241 -0.6148 -1.3208 40 1 0.4453 -5.8314 -3.0932 41 1 3.1352 -2.9533 0.1773 42 1 1.5877 -3.8358 0.1251 43 1 0.4497 -2.0284 1.2994 44 1 1.9106 -2.4485 2.2263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107839674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -31.921353 kcal Electronic energy + Delta-G solvation = -23769.629764 eV Core-core repulsion = 20302.352200 eV Total energy + Delta-G solvation = -3467.277564 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22048 -40.30439 -38.42170 -36.78037 -35.88706 -33.83485 -33.54062 -32.93822 -29.96573 -28.20428 -27.76573 -25.05137 -24.81632 -23.23734 -23.14835 -21.62906 -20.76341 -20.32272 -18.98540 -18.39541 -17.64323 -17.34008 -17.01689 -16.30444 -16.07018 -16.02238 -15.86376 -15.59438 -15.45891 -15.16635 -14.58207 -14.25267 -14.13038 -13.81852 -13.56284 -13.46047 -13.28077 -12.96146 -12.61806 -12.56185 -12.36408 -12.35853 -12.15549 -12.10566 -12.08042 -11.56757 -11.40069 -11.29005 -11.09670 -10.94059 -10.49561 -10.25898 -9.89601 -8.96336 -8.19349 -5.52498 0.34719 1.25727 1.40118 1.47969 2.18190 2.28027 2.37584 2.67179 3.00142 3.04848 3.20568 3.60542 3.79474 3.88151 3.96543 3.97031 4.04442 4.13536 4.23855 4.24659 4.28937 4.45151 4.46360 4.54595 4.65400 4.66831 4.74534 4.80916 4.83819 4.93068 5.00826 5.02222 5.04308 5.14221 5.26401 5.33861 5.36881 5.41982 5.50155 5.77520 6.08082 6.21955 6.58527 6.80915 7.24090 7.53641 7.94396 8.99911 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041856 B = 0.002798 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.803072 B =10006.207436 C =10174.714752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 C 0.146 3.854 4 N -0.703 5.703 5 C 0.539 3.461 6 O -0.597 6.597 7 C -0.217 4.217 8 C -0.030 4.030 9 C -0.148 4.148 10 C -0.170 4.170 11 C -0.164 4.164 12 C 0.124 3.876 13 N -0.616 5.616 14 C -0.244 4.244 15 H 0.058 0.942 16 C -0.033 4.033 17 N -0.954 5.954 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.312 1.312 21 H -0.270 1.270 22 C 0.080 3.920 23 C 0.054 3.946 24 O -0.377 6.377 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.415 0.585 31 H 0.156 0.844 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 19.893 18.623 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 C 0.021 3.979 4 N -0.354 5.354 5 C 0.330 3.670 6 O -0.480 6.480 7 C -0.237 4.237 8 C -0.050 4.050 9 C -0.166 4.166 10 C -0.207 4.207 11 C -0.200 4.200 12 C -0.002 4.002 13 N -0.341 5.341 14 C -0.373 4.373 15 H 0.076 0.924 16 C -0.228 4.228 17 N -0.600 5.600 18 Si 0.774 3.226 19 H -0.195 1.195 20 H -0.241 1.241 21 H -0.195 1.195 22 C -0.044 4.044 23 C -0.023 4.023 24 O -0.296 6.296 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.253 0.747 31 H 0.173 0.827 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.938 20.208 18.112 27.153 hybrid contribution 0.301 -1.514 -0.476 1.616 sum 1.240 18.694 17.635 25.730 Atomic orbital electron populations 1.22188 0.94036 1.02685 1.02873 1.22048 0.94588 0.90774 0.86821 1.21128 0.99240 0.88728 0.88760 1.45704 1.53101 1.11498 1.25090 1.19113 0.79508 0.81663 0.86762 1.90758 1.40794 1.67359 1.49099 1.22523 1.06702 0.96601 0.97902 1.23161 0.92886 0.94046 0.94902 1.21387 1.02009 0.96754 0.96490 1.23121 1.03626 0.91056 1.02886 1.23075 0.96754 1.02637 0.97579 1.21655 0.97822 0.83845 0.96892 1.44399 1.69229 1.07014 1.13485 1.18816 1.20436 0.91028 1.07043 0.92389 1.25831 1.00185 0.97395 0.99399 1.69940 1.36214 1.07286 1.46517 0.85973 0.81827 0.77325 0.77435 1.19457 1.24111 1.19458 1.22133 0.98009 0.96878 0.87422 1.23054 0.99317 0.81887 0.98067 1.87862 1.72968 1.25840 1.42921 0.90303 0.91575 0.92752 0.91899 0.89790 0.74734 0.82654 0.87247 0.85124 0.88697 0.86712 0.86565 0.88937 0.91037 0.94893 0.92874 0.94984 0.91696 0.92070 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 7.92 71.99 0.57 -4.00 16 2 C 0.10 3.02 0.76 -10.69 -0.01 3.01 16 3 C 0.15 4.06 4.82 86.38 0.42 4.48 16 4 N -0.70 -16.61 5.15 -466.72 -2.40 -19.02 16 5 C 0.54 13.95 7.76 86.57 0.67 14.62 16 6 O -0.60 -20.43 16.22 -4.07 -0.07 -20.49 16 7 C -0.22 -3.93 9.67 23.43 0.23 -3.70 16 8 C -0.03 -0.52 9.24 24.52 0.23 -0.29 16 9 C -0.15 -1.71 6.01 -11.54 -0.07 -1.78 16 10 C -0.17 -1.64 10.23 30.59 0.31 -1.33 16 11 C -0.16 -1.59 10.23 30.60 0.31 -1.28 16 12 C 0.12 4.73 5.41 86.34 0.47 5.20 16 13 N -0.62 -28.20 2.35 -697.34 -1.64 -29.84 16 14 C -0.24 -13.45 10.10 84.03 0.85 -12.61 16 15 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 16 C -0.03 -1.90 5.26 84.86 0.45 -1.45 16 17 N -0.95 -58.81 13.97 21.65 0.30 -58.51 16 18 Si 0.95 45.98 24.28 68.60 1.67 47.65 16 19 H -0.27 -12.04 6.58 99.48 0.65 -11.38 16 20 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 21 H -0.27 -12.90 6.54 99.48 0.65 -12.25 16 22 C 0.08 3.29 4.38 86.35 0.38 3.67 16 23 C 0.05 1.71 6.60 72.08 0.48 2.19 16 24 O -0.38 -11.71 9.97 -148.98 -1.49 -13.20 16 25 H 0.08 1.76 6.88 -2.39 -0.02 1.74 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.86 6.11 -2.39 -0.01 1.84 16 28 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.42 7.97 7.19 -92.71 -0.67 7.30 16 31 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.11 2.27 7.49 -2.91 -0.02 2.25 16 33 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.03 1.33 6.86 -2.39 -0.02 1.32 16 42 H 0.06 2.87 4.60 -2.39 -0.01 2.86 16 43 H 0.06 1.90 6.25 -2.39 -0.01 1.89 16 44 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -70.42 349.76 1.87 -68.56 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.22 Total: 18.14 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.28 Total: 6.72 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.74 Total: -107.37 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.55 Total: -33.69 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.65 kcal Total: -70.42 1.87 -68.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.635 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds