Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.55364 * 2 1 4 4 N 1.46503 * 109.46866 * 60.12564 * 3 2 1 5 5 C 1.34776 * 119.99764 * 180.02562 * 4 3 2 6 6 O 1.21617 * 119.99784 * 0.02562 * 5 4 3 7 7 C 1.47098 * 119.99830 * 179.97438 * 5 4 3 8 8 C 1.32998 * 119.99521 * 176.83865 * 7 5 4 9 9 C 1.50692 * 120.00658 * 352.94597 * 8 7 5 10 10 C 1.53004 * 117.50317 * 179.88089 * 9 8 7 11 11 C 1.53003 * 117.50224 * 111.25572 * 9 8 7 12 12 C 1.53298 * 109.51505 * 239.87482 * 2 1 3 13 13 N 1.47228 * 108.40202 * 292.38032 * 12 2 1 14 14 C 1.36935 * 121.03219 * 129.46050 * 13 12 2 15 15 H 1.08006 * 119.99844 * 329.17630 * 14 13 12 16 16 C 1.38806 * 120.00113 * 149.16850 * 14 13 12 17 17 N 1.31621 * 120.00275 * 161.30997 * 16 14 13 18 18 Si 1.86799 * 119.99971 * 341.31273 * 16 14 13 19 19 H 1.48497 * 109.47243 * 84.15077 * 18 16 14 20 20 H 1.48506 * 109.47004 * 204.14861 * 18 16 14 21 21 H 1.48498 * 109.47295 * 324.14665 * 18 16 14 22 22 C 1.47149 * 117.98772 * 309.48189 * 13 12 2 23 23 C 1.53301 * 108.41365 * 50.52166 * 22 13 12 24 24 O 1.42954 * 109.22407 * 307.67949 * 23 22 13 25 25 H 1.09001 * 109.47224 * 299.87105 * 1 2 3 26 26 H 1.09001 * 109.47504 * 59.87444 * 1 2 3 27 27 H 1.08998 * 109.46731 * 179.87303 * 1 2 3 28 28 H 1.08996 * 109.47478 * 180.12805 * 3 2 1 29 29 H 1.09002 * 109.47067 * 300.13011 * 3 2 1 30 30 H 0.96999 * 119.99861 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.00270 * 356.84100 * 7 5 4 32 32 H 1.08004 * 119.99750 * 172.94735 * 8 7 5 33 33 H 1.09006 * 115.54859 * 325.59476 * 9 8 7 34 34 H 1.08996 * 117.49605 * 0.02562 * 10 9 8 35 35 H 1.08998 * 117.49584 * 145.01849 * 10 9 8 36 36 H 1.08995 * 117.50444 * 214.97995 * 11 9 8 37 37 H 1.09007 * 117.49178 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.67722 * 52.09935 * 12 2 1 39 39 H 1.08999 * 109.68228 * 172.65103 * 12 2 1 40 40 H 0.96999 * 120.00589 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.68367 * 290.78345 * 22 13 12 42 42 H 1.08997 * 109.68314 * 170.26209 * 22 13 12 43 43 H 1.08997 * 109.51035 * 67.60621 * 23 22 13 44 44 H 1.09004 * 109.51063 * 187.70476 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.5571 2.1322 1.1977 5 6 1.8846 3.4221 1.4110 6 8 2.5822 4.0129 0.6090 7 6 1.3973 4.1154 2.6133 8 6 1.7715 5.3684 2.8559 9 6 2.8159 6.0241 1.9898 10 6 3.2014 7.4678 2.3183 11 6 2.3618 7.1640 1.0758 12 6 2.0420 -0.7252 -1.2498 13 7 1.6959 -2.1515 -1.1340 14 6 1.0613 -2.8090 -2.1539 15 1 0.3827 -2.2738 -2.8017 16 6 1.2902 -4.1631 -2.3553 17 7 0.4410 -4.8758 -3.0648 18 14 2.8034 -4.9742 -1.6192 19 1 2.5245 -5.3577 -0.2120 20 1 3.1460 -6.1873 -2.4042 21 1 3.9427 -4.0225 -1.6564 22 6 2.0522 -2.8497 0.1113 23 6 1.5396 -2.0210 1.2948 24 8 2.0074 -0.6763 1.1655 25 1 -0.3634 0.5118 0.8911 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0023 28 1 3.1320 1.4403 -0.0023 29 1 1.6775 1.9568 -0.8888 30 1 1.0004 1.6610 1.8372 31 1 0.7356 3.6071 3.2990 32 1 1.3269 5.9160 3.6737 33 1 3.6012 5.3648 1.6198 34 1 2.6999 7.9433 3.1611 35 1 4.2406 7.7586 2.1646 36 1 2.8486 7.2550 0.1048 37 1 1.3075 7.4399 1.1014 38 1 1.5704 -0.3040 -2.1376 39 1 3.1241 -0.6147 -1.3208 40 1 0.6007 -5.8221 -3.2053 41 1 3.1353 -2.9531 0.1773 42 1 1.5878 -3.8357 0.1252 43 1 0.4497 -2.0284 1.2995 44 1 1.9107 -2.4483 2.2264 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107839675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = -3.906730 kcal Electronic energy + Delta-G solvation = -24131.048375 eV Core-core repulsion = 20664.985616 eV Total energy + Delta-G solvation = -3466.062759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03839 -39.13908 -37.38715 -35.14762 -34.42122 -32.72218 -31.98124 -31.40010 -28.42071 -26.88820 -26.09114 -23.75876 -23.16036 -22.49923 -21.76813 -20.97906 -19.79602 -18.91570 -17.15687 -16.91061 -16.40934 -15.78241 -15.53221 -15.38154 -14.83960 -14.68027 -14.37193 -14.03139 -13.92071 -13.74860 -13.45443 -13.01649 -12.73674 -12.45212 -12.30880 -11.91084 -11.81146 -11.71374 -11.60713 -11.43354 -11.18920 -11.00907 -10.80888 -10.55967 -10.43108 -10.34445 -9.74728 -9.61005 -9.57123 -9.38988 -9.26666 -8.85076 -8.58180 -7.00015 -6.03420 -3.44439 1.21097 3.25032 3.26256 3.31353 3.43533 3.47664 3.82815 4.02879 4.41914 4.45856 4.72102 4.74273 4.83965 4.94003 5.10470 5.17117 5.21656 5.23474 5.28269 5.37280 5.44664 5.70182 5.73196 5.76291 5.81993 5.87123 5.94579 5.97383 6.01445 6.07026 6.09686 6.22613 6.23167 6.35678 6.47316 6.48126 6.55411 6.56480 6.72104 7.61183 7.62384 7.85865 8.24159 8.31771 8.81669 9.61406 9.99518 11.12237 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038548 B = 0.003050 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.190507 B = 9177.502245 C = 9288.028916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 C 0.139 3.861 4 N -0.714 5.714 5 C 0.539 3.461 6 O -0.541 6.541 7 C -0.214 4.214 8 C -0.038 4.038 9 C -0.125 4.125 10 C -0.189 4.189 11 C -0.156 4.156 12 C 0.130 3.870 13 N -0.604 5.604 14 C -0.262 4.262 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.906 5.906 18 Si 0.885 3.115 19 H -0.285 1.285 20 H -0.302 1.302 21 H -0.273 1.273 22 C 0.090 3.910 23 C 0.046 3.954 24 O -0.380 6.380 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.403 0.597 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 18.294 13.291 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C 0.015 3.985 4 N -0.365 5.365 5 C 0.328 3.672 6 O -0.420 6.420 7 C -0.235 4.235 8 C -0.058 4.058 9 C -0.143 4.143 10 C -0.226 4.226 11 C -0.193 4.193 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.390 4.390 15 H 0.104 0.896 16 C -0.172 4.172 17 N -0.549 5.549 18 Si 0.716 3.284 19 H -0.212 1.212 20 H -0.230 1.230 21 H -0.199 1.199 22 C -0.035 4.035 23 C -0.032 4.032 24 O -0.299 6.299 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.238 0.762 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.610 18.590 12.714 22.579 hybrid contribution 0.314 -1.167 0.555 1.330 sum 1.924 17.423 13.270 21.985 Atomic orbital electron populations 1.22251 0.95102 1.03847 1.01196 1.22231 0.93972 0.90619 0.88625 1.21320 0.99817 0.89588 0.87766 1.45867 1.53487 1.11661 1.25523 1.18595 0.80399 0.81583 0.86637 1.90746 1.38194 1.65965 1.47141 1.22628 1.05328 0.96720 0.98790 1.23078 0.92505 0.93986 0.96221 1.21554 1.00965 0.90699 1.01062 1.23082 1.00867 0.98926 0.99734 1.22791 1.00029 1.01439 0.95083 1.21505 0.97687 0.85636 0.94885 1.44308 1.69291 1.05769 1.13479 1.18854 1.19103 0.92685 1.08383 0.89630 1.25354 0.97731 0.96740 0.97368 1.69807 1.35191 1.07270 1.42607 0.86968 0.85515 0.78385 0.77577 1.21213 1.22995 1.19862 1.22054 0.97943 0.96905 0.86625 1.23086 0.98940 0.82492 0.98699 1.87840 1.72849 1.26085 1.43171 0.93343 0.91790 0.90281 0.90899 0.90102 0.76177 0.85432 0.85783 0.84866 0.89048 0.88729 0.88547 0.89124 0.90823 0.94890 0.92600 0.95164 0.89943 0.92596 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 7.92 37.15 0.29 -2.22 16 2 C 0.09 1.39 0.76 -90.47 -0.07 1.32 16 3 C 0.14 2.00 4.82 -4.04 -0.02 1.98 16 4 N -0.71 -9.01 5.15 -61.49 -0.32 -9.33 16 5 C 0.54 7.05 7.70 -12.67 -0.10 6.95 16 6 O -0.54 -8.58 13.27 5.26 0.07 -8.51 16 7 C -0.21 -2.10 10.02 -37.81 -0.38 -2.48 16 8 C -0.04 -0.35 9.74 -36.13 -0.35 -0.70 16 9 C -0.13 -1.31 4.31 -91.77 -0.40 -1.70 16 10 C -0.19 -1.55 10.23 -26.73 -0.27 -1.83 16 11 C -0.16 -1.49 10.23 -26.73 -0.27 -1.77 16 12 C 0.13 2.51 5.41 -3.49 -0.02 2.49 16 13 N -0.60 -13.88 2.28 -171.77 -0.39 -14.27 16 14 C -0.26 -7.08 10.06 -15.06 -0.15 -7.24 16 15 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 16 C 0.03 0.78 5.24 -17.43 -0.09 0.69 16 17 N -0.91 -27.16 13.97 55.49 0.78 -26.38 16 18 Si 0.89 22.07 24.38 -169.99 -4.14 17.92 16 19 H -0.28 -6.71 6.33 56.52 0.36 -6.35 16 20 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 21 H -0.27 -6.87 7.05 56.52 0.40 -6.47 16 22 C 0.09 1.91 4.38 -3.53 -0.02 1.90 16 23 C 0.05 0.78 6.60 37.31 0.25 1.03 16 24 O -0.38 -6.43 9.97 -35.23 -0.35 -6.78 16 25 H 0.05 0.61 6.88 -51.93 -0.36 0.26 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.40 6.11 -51.93 -0.32 1.08 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.40 4.48 7.19 -40.82 -0.29 4.19 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.13 1.73 6.26 -51.93 -0.33 1.41 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.39 7.96 -51.93 -0.41 0.98 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.03 0.66 7.08 -51.93 -0.37 0.29 16 42 H 0.08 1.87 4.96 -51.93 -0.26 1.61 16 43 H 0.06 0.94 6.25 -51.93 -0.32 0.62 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -31.24 345.39 -7.66 -38.91 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.91 Total: 4.81 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.60 Total: -1.57 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.07 Total: -49.98 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.28 Total: -15.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.24 -7.66 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.999 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds