Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.55364 * 2 1 4 4 N 1.46503 * 109.46866 * 60.12564 * 3 2 1 5 5 C 1.34776 * 119.99764 * 180.02562 * 4 3 2 6 6 O 1.21617 * 119.99784 * 0.02562 * 5 4 3 7 7 C 1.47098 * 119.99830 * 179.97438 * 5 4 3 8 8 C 1.32998 * 119.99521 * 176.83865 * 7 5 4 9 9 C 1.50692 * 120.00658 * 352.94597 * 8 7 5 10 10 C 1.53004 * 117.50317 * 179.88089 * 9 8 7 11 11 C 1.53003 * 117.50224 * 111.25572 * 9 8 7 12 12 C 1.53298 * 109.51505 * 239.87482 * 2 1 3 13 13 N 1.47228 * 108.40202 * 292.38032 * 12 2 1 14 14 C 1.36935 * 121.03219 * 129.46050 * 13 12 2 15 15 H 1.08006 * 119.99844 * 329.17630 * 14 13 12 16 16 C 1.38806 * 120.00113 * 149.16850 * 14 13 12 17 17 N 1.31621 * 120.00275 * 161.30997 * 16 14 13 18 18 Si 1.86799 * 119.99971 * 341.31273 * 16 14 13 19 19 H 1.48497 * 109.47243 * 84.15077 * 18 16 14 20 20 H 1.48506 * 109.47004 * 204.14861 * 18 16 14 21 21 H 1.48498 * 109.47295 * 324.14665 * 18 16 14 22 22 C 1.47149 * 117.98772 * 309.48189 * 13 12 2 23 23 C 1.53301 * 108.41365 * 50.52166 * 22 13 12 24 24 O 1.42954 * 109.22407 * 307.67949 * 23 22 13 25 25 H 1.09001 * 109.47224 * 299.87105 * 1 2 3 26 26 H 1.09001 * 109.47504 * 59.87444 * 1 2 3 27 27 H 1.08998 * 109.46731 * 179.87303 * 1 2 3 28 28 H 1.08996 * 109.47478 * 180.12805 * 3 2 1 29 29 H 1.09002 * 109.47067 * 300.13011 * 3 2 1 30 30 H 0.96999 * 119.99861 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.00270 * 356.84100 * 7 5 4 32 32 H 1.08004 * 119.99750 * 172.94735 * 8 7 5 33 33 H 1.09006 * 115.54859 * 325.59476 * 9 8 7 34 34 H 1.08996 * 117.49605 * 0.02562 * 10 9 8 35 35 H 1.08998 * 117.49584 * 145.01849 * 10 9 8 36 36 H 1.08995 * 117.50444 * 214.97995 * 11 9 8 37 37 H 1.09007 * 117.49178 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.67722 * 52.09935 * 12 2 1 39 39 H 1.08999 * 109.68228 * 172.65103 * 12 2 1 40 40 H 0.96999 * 120.00589 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.68367 * 290.78345 * 22 13 12 42 42 H 1.08997 * 109.68314 * 170.26209 * 22 13 12 43 43 H 1.08997 * 109.51035 * 67.60621 * 23 22 13 44 44 H 1.09004 * 109.51063 * 187.70476 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.5571 2.1322 1.1977 5 6 1.8846 3.4221 1.4110 6 8 2.5822 4.0129 0.6090 7 6 1.3973 4.1154 2.6133 8 6 1.7715 5.3684 2.8559 9 6 2.8159 6.0241 1.9898 10 6 3.2014 7.4678 2.3183 11 6 2.3618 7.1640 1.0758 12 6 2.0420 -0.7252 -1.2498 13 7 1.6959 -2.1515 -1.1340 14 6 1.0613 -2.8090 -2.1539 15 1 0.3827 -2.2738 -2.8017 16 6 1.2902 -4.1631 -2.3553 17 7 0.4410 -4.8758 -3.0648 18 14 2.8034 -4.9742 -1.6192 19 1 2.5245 -5.3577 -0.2120 20 1 3.1460 -6.1873 -2.4042 21 1 3.9427 -4.0225 -1.6564 22 6 2.0522 -2.8497 0.1113 23 6 1.5396 -2.0210 1.2948 24 8 2.0074 -0.6763 1.1655 25 1 -0.3634 0.5118 0.8911 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0023 28 1 3.1320 1.4403 -0.0023 29 1 1.6775 1.9568 -0.8888 30 1 1.0004 1.6610 1.8372 31 1 0.7356 3.6071 3.2990 32 1 1.3269 5.9160 3.6737 33 1 3.6012 5.3648 1.6198 34 1 2.6999 7.9433 3.1611 35 1 4.2406 7.7586 2.1646 36 1 2.8486 7.2550 0.1048 37 1 1.3075 7.4399 1.1014 38 1 1.5704 -0.3040 -2.1376 39 1 3.1241 -0.6147 -1.3208 40 1 0.6007 -5.8221 -3.2053 41 1 3.1353 -2.9531 0.1773 42 1 1.5878 -3.8357 0.1252 43 1 0.4497 -2.0284 1.2995 44 1 1.9107 -2.4483 2.2264 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107839675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = -25.006418 kcal Electronic energy + Delta-G solvation = -24131.963326 eV Core-core repulsion = 20664.985616 eV Total energy + Delta-G solvation = -3466.977710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21650 -40.37414 -38.18272 -36.70248 -35.81557 -33.81347 -33.50646 -32.88417 -29.95018 -28.18123 -27.70107 -24.82076 -24.74845 -23.23220 -23.10275 -22.03489 -20.88041 -20.21815 -18.95997 -17.97496 -17.64828 -17.29871 -16.86552 -16.37401 -16.04941 -15.92013 -15.70316 -15.56638 -15.43351 -15.10309 -14.38380 -14.27354 -14.06894 -13.86243 -13.78104 -13.43377 -13.23316 -12.95567 -12.63902 -12.60701 -12.38727 -12.35625 -12.16342 -12.13301 -11.91537 -11.62808 -11.29013 -11.23895 -11.04031 -10.55661 -10.47410 -10.13861 -9.80238 -8.90415 -8.21102 -5.58099 0.45246 1.25979 1.39277 1.47667 2.27529 2.36274 2.37391 2.69325 3.01824 3.11635 3.20111 3.71825 3.81081 3.88360 3.96692 4.03462 4.10281 4.22183 4.25673 4.29461 4.44083 4.49436 4.56496 4.59561 4.66239 4.68030 4.76178 4.80345 4.85275 4.93647 5.00892 5.02461 5.05167 5.24991 5.28971 5.35702 5.37102 5.51140 5.62936 5.80889 6.08648 6.23262 6.67644 6.81980 7.35161 7.52489 7.95440 8.98406 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038548 B = 0.003050 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.190507 B = 9177.502245 C = 9288.028916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 C 0.149 3.851 4 N -0.708 5.708 5 C 0.531 3.469 6 O -0.577 6.577 7 C -0.225 4.225 8 C -0.027 4.027 9 C -0.148 4.148 10 C -0.168 4.168 11 C -0.166 4.166 12 C 0.123 3.877 13 N -0.616 5.616 14 C -0.247 4.247 15 H 0.055 0.945 16 C -0.027 4.027 17 N -0.953 5.953 18 Si 0.944 3.056 19 H -0.261 1.261 20 H -0.310 1.310 21 H -0.276 1.276 22 C 0.082 3.918 23 C 0.055 3.945 24 O -0.377 6.377 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.413 0.587 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.029 0.971 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 20.002 16.546 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C 0.024 3.976 4 N -0.360 5.360 5 C 0.322 3.678 6 O -0.459 6.459 7 C -0.245 4.245 8 C -0.046 4.046 9 C -0.166 4.166 10 C -0.204 4.204 11 C -0.203 4.203 12 C -0.003 4.003 13 N -0.341 5.341 14 C -0.377 4.377 15 H 0.073 0.927 16 C -0.223 4.223 17 N -0.598 5.598 18 Si 0.773 3.227 19 H -0.186 1.186 20 H -0.239 1.239 21 H -0.202 1.202 22 C -0.043 4.043 23 C -0.023 4.023 24 O -0.296 6.296 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.250 0.750 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.598 20.321 16.024 25.928 hybrid contribution 0.338 -1.570 -0.514 1.687 sum 1.936 18.750 15.510 24.410 Atomic orbital electron populations 1.22172 0.94074 1.02610 1.02810 1.22047 0.94554 0.90897 0.86720 1.21059 0.99013 0.88622 0.88881 1.45767 1.53515 1.11697 1.24994 1.19242 0.79717 0.81413 0.87388 1.90747 1.39794 1.66661 1.48670 1.22733 1.06578 0.97089 0.98112 1.23409 0.91179 0.93767 0.96235 1.21496 1.01245 0.91384 1.02432 1.23169 1.01023 0.96817 0.99425 1.22830 1.00831 1.01489 0.95166 1.21670 0.97672 0.84058 0.96895 1.44381 1.69232 1.07029 1.13485 1.18768 1.17853 0.92581 1.08461 0.92721 1.25928 1.00096 0.97537 0.98695 1.69927 1.37041 1.07547 1.45318 0.86006 0.81773 0.76896 0.78044 1.18631 1.23861 1.20192 1.22156 0.97740 0.97008 0.87367 1.23051 0.99302 0.81889 0.98064 1.87860 1.72981 1.25861 1.42940 0.90308 0.91686 0.92802 0.92163 0.90058 0.75018 0.82274 0.82137 0.88119 0.86663 0.88513 0.89844 0.88120 0.91170 0.95101 0.92785 0.95330 0.91511 0.92064 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 7.92 71.98 0.57 -3.97 16 2 C 0.10 3.03 0.76 -10.69 -0.01 3.02 16 3 C 0.15 4.12 4.82 86.38 0.42 4.54 16 4 N -0.71 -16.42 5.15 -466.70 -2.40 -18.82 16 5 C 0.53 13.12 7.70 86.57 0.67 13.79 16 6 O -0.58 -18.29 13.27 -4.09 -0.05 -18.34 16 7 C -0.22 -3.75 10.02 23.43 0.23 -3.51 16 8 C -0.03 -0.40 9.74 24.52 0.24 -0.16 16 9 C -0.15 -2.89 4.31 -11.54 -0.05 -2.94 16 10 C -0.17 -2.37 10.23 30.60 0.31 -2.06 16 11 C -0.17 -2.99 10.23 30.60 0.31 -2.67 16 12 C 0.12 4.74 5.41 86.34 0.47 5.21 16 13 N -0.62 -28.28 2.28 -697.34 -1.59 -29.88 16 14 C -0.25 -13.67 10.06 84.03 0.85 -12.83 16 15 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 16 C -0.03 -1.55 5.24 84.86 0.45 -1.10 16 17 N -0.95 -58.74 13.97 21.65 0.30 -58.44 16 18 Si 0.94 46.00 24.38 68.60 1.67 47.67 16 19 H -0.26 -11.56 6.33 99.48 0.63 -10.93 16 20 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 21 H -0.28 -13.46 7.05 99.48 0.70 -12.76 16 22 C 0.08 3.36 4.38 86.36 0.38 3.74 16 23 C 0.05 1.72 6.60 72.08 0.48 2.20 16 24 O -0.38 -11.77 9.97 -148.98 -1.49 -13.26 16 25 H 0.08 1.76 6.88 -2.39 -0.02 1.74 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.84 6.11 -2.39 -0.01 1.82 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.41 7.87 7.19 -92.71 -0.67 7.20 16 31 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.10 2.67 6.26 -2.38 -0.01 2.65 16 34 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.03 1.19 7.08 -2.39 -0.02 1.17 16 42 H 0.07 2.94 4.96 -2.39 -0.01 2.93 16 43 H 0.06 1.90 6.25 -2.39 -0.01 1.88 16 44 H 0.12 2.98 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -69.79 345.39 1.99 -67.80 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.25 Total: 20.03 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.31 Total: 3.24 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -3.69 Total: -107.14 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.54 Total: -31.60 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -69.79 1.99 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.790 kcal (2) G-P(sol) polarization free energy of solvation -69.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds