Wall clock time and date at job start Tue Mar 31 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.51158 * 2 1 4 4 N 1.46494 * 109.47401 * 304.90187 * 3 2 1 5 5 C 1.34777 * 119.99962 * 180.02562 * 4 3 2 6 6 O 1.21607 * 120.00100 * 359.97438 * 5 4 3 7 7 C 1.47098 * 119.99788 * 179.97438 * 5 4 3 8 8 C 1.32995 * 120.00236 * 172.82128 * 7 5 4 9 9 C 1.50705 * 119.99293 * 352.57351 * 8 7 5 10 10 C 1.53013 * 117.49597 * 180.60766 * 9 8 7 11 11 C 1.53005 * 117.49794 * 111.95464 * 9 8 7 12 12 C 1.53287 * 109.51049 * 120.15531 * 2 1 3 13 13 N 1.47157 * 108.38759 * 67.62024 * 12 2 1 14 14 C 1.36935 * 120.98178 * 230.55426 * 13 12 2 15 15 H 1.07995 * 119.99467 * 154.53040 * 14 13 12 16 16 C 1.38809 * 120.00378 * 334.52933 * 14 13 12 17 17 N 1.31624 * 119.99738 * 341.86066 * 16 14 13 18 18 Si 1.86797 * 120.00006 * 161.85900 * 16 14 13 19 19 H 1.48497 * 109.46935 * 94.96289 * 18 16 14 20 20 H 1.48497 * 109.47248 * 214.95963 * 18 16 14 21 21 H 1.48498 * 109.47184 * 334.96201 * 18 16 14 22 22 C 1.47157 * 118.03096 * 50.53347 * 13 12 2 23 23 C 1.53288 * 108.38448 * 309.46419 * 22 13 12 24 24 O 1.42965 * 109.51106 * 239.90282 * 2 1 3 25 25 H 1.08997 * 109.47257 * 180.09621 * 1 2 3 26 26 H 1.09000 * 109.46972 * 300.10088 * 1 2 3 27 27 H 1.08999 * 109.46761 * 60.10023 * 1 2 3 28 28 H 1.09005 * 109.46931 * 64.90387 * 3 2 1 29 29 H 1.09002 * 109.46791 * 184.89645 * 3 2 1 30 30 H 0.97003 * 119.99676 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.00512 * 352.82278 * 7 5 4 32 32 H 1.08002 * 120.00786 * 172.57489 * 8 7 5 33 33 H 1.08996 * 115.55211 * 326.27779 * 9 8 7 34 34 H 1.09004 * 117.49426 * 0.02562 * 10 9 8 35 35 H 1.08998 * 117.49586 * 145.01739 * 10 9 8 36 36 H 1.08998 * 117.49737 * 214.97637 * 11 9 8 37 37 H 1.08997 * 117.49561 * 359.97047 * 11 9 8 38 38 H 1.09005 * 109.68069 * 187.34514 * 12 2 1 39 39 H 1.08999 * 109.68682 * 307.85902 * 12 2 1 40 40 H 0.97000 * 119.99919 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.67538 * 189.73985 * 22 13 12 42 42 H 1.08997 * 109.68300 * 69.18917 * 22 13 12 43 43 H 1.09007 * 109.51370 * 172.22736 * 23 22 13 44 44 H 1.08996 * 109.51404 * 292.33048 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 7 1.4594 2.1664 -1.1327 5 6 1.7696 3.4623 -1.3349 6 8 2.5320 4.0305 -0.5769 7 6 1.1858 4.1894 -2.4727 8 6 1.3761 5.5002 -2.5924 9 6 2.0441 6.2691 -1.4817 10 6 2.2214 7.7768 -1.6735 11 6 3.4338 6.8463 -1.7584 12 6 2.0420 -0.7258 1.2493 13 7 1.6959 -2.1513 1.1325 14 6 1.0608 -2.8083 2.1524 15 1 0.4575 -3.6788 1.9408 16 6 1.1923 -2.3556 3.4579 17 7 2.1786 -1.5445 3.7770 18 14 -0.0304 -2.8975 4.7620 19 1 0.5108 -4.0733 5.4899 20 1 -0.2589 -1.7852 5.7190 21 1 -1.3151 -3.2647 4.1140 22 6 2.0521 -2.8497 -0.1128 23 6 1.5396 -2.0204 -1.2958 24 8 2.0076 -0.6758 -1.1659 25 1 -0.3633 -1.0276 0.0017 26 1 -0.3633 0.5154 0.8891 27 1 -0.3633 0.5123 -0.8909 28 1 1.7516 1.9302 0.9307 29 1 3.1276 1.4426 -0.0877 30 1 0.8515 1.7131 -1.7376 31 1 0.6027 3.6589 -3.2108 32 1 1.0520 6.0137 -3.4856 33 1 1.8397 5.9107 -0.4728 34 1 1.8545 8.2124 -2.6028 35 1 2.1340 8.4101 -0.7906 36 1 4.1436 6.8678 -0.9315 37 1 3.8651 6.6694 -2.7437 38 1 3.1241 -0.6154 1.3205 39 1 1.5710 -0.3047 2.1375 40 1 2.2703 -1.2278 4.6892 41 1 1.5872 -3.8355 -0.1267 42 1 3.1352 -2.9531 -0.1789 43 1 1.9113 -2.4468 -2.2276 44 1 0.4497 -2.0284 -1.3010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107839676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:20 Heat of formation + Delta-G solvation = -7.569162 kcal Electronic energy + Delta-G solvation = -24261.748617 eV Core-core repulsion = 20795.527043 eV Total energy + Delta-G solvation = -3466.221574 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85145 -38.89045 -37.27438 -34.87469 -34.31332 -32.58694 -31.53891 -31.24728 -27.95936 -26.68600 -25.81671 -23.57144 -23.21885 -22.41431 -21.53965 -20.82034 -19.58919 -18.59198 -17.08719 -16.89679 -16.01628 -15.78392 -15.17208 -15.03318 -14.76970 -14.45461 -14.15822 -13.99891 -13.57645 -13.45055 -13.24089 -12.93278 -12.64260 -12.47830 -11.92796 -11.73611 -11.62311 -11.58499 -11.19869 -11.10008 -11.02717 -10.81965 -10.66511 -10.45342 -10.32297 -10.26679 -9.96306 -9.56896 -9.48804 -9.16357 -9.02977 -8.67990 -8.53798 -6.75968 -5.85762 -3.27713 1.32149 3.32598 3.39592 3.40707 3.42284 3.48342 3.91927 4.26082 4.43141 4.50907 4.81831 4.93057 5.03680 5.14867 5.24349 5.30887 5.33495 5.48848 5.51928 5.52577 5.67546 5.79379 5.91217 5.93604 6.02899 6.03172 6.09021 6.10884 6.13812 6.19851 6.31189 6.43016 6.48347 6.59822 6.72033 6.77836 6.81949 7.06363 7.45610 7.69841 7.78289 7.88595 8.31304 8.47048 9.09516 9.73157 10.30068 11.22303 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.003496 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.257632 B = 8006.701334 C = 8713.267237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.140 3.860 4 N -0.715 5.715 5 C 0.536 3.464 6 O -0.539 6.539 7 C -0.212 4.212 8 C -0.041 4.041 9 C -0.123 4.123 10 C -0.190 4.190 11 C -0.156 4.156 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.900 5.900 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.279 1.279 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.384 6.384 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.401 0.599 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.096 0.904 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 11.663 -13.545 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.016 3.984 4 N -0.366 5.366 5 C 0.325 3.675 6 O -0.419 6.419 7 C -0.233 4.233 8 C -0.061 4.061 9 C -0.140 4.140 10 C -0.227 4.227 11 C -0.193 4.193 12 C 0.033 3.967 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.304 6.304 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.236 0.764 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.098 0.902 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.646 12.164 -12.932 17.950 hybrid contribution -1.035 -0.816 0.541 1.425 sum -3.681 11.349 -12.391 17.201 Atomic orbital electron populations 1.22201 0.95815 1.03205 1.00672 1.22546 0.93544 0.90773 0.89434 1.21309 0.98750 0.89385 0.88916 1.45971 1.48776 1.11068 1.30777 1.18588 0.81799 0.81910 0.85197 1.90759 1.36264 1.67333 1.47551 1.22654 1.04846 0.95743 1.00047 1.23052 0.92739 0.93997 0.96268 1.21487 0.99587 0.93018 0.99938 1.23095 1.03615 0.92925 1.03020 1.22794 0.90851 1.02732 1.02890 1.21284 0.97810 0.83908 0.93682 1.44015 1.68629 1.05007 1.13809 1.19151 1.22014 1.11672 0.85508 0.91410 1.25013 0.97342 1.00211 0.97013 1.70034 1.28947 1.36999 1.18472 0.86296 0.81193 0.77814 0.81596 1.21420 1.21451 1.20411 1.21597 0.97553 0.95219 0.87374 1.23031 0.98288 0.83183 0.98701 1.87829 1.72896 1.25795 1.43832 0.90814 0.91898 0.93948 0.90112 0.90924 0.76406 0.85503 0.85839 0.85157 0.89079 0.88749 0.88537 0.89135 0.95300 0.88569 0.93453 0.92054 0.95662 0.90217 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 7.86 37.16 0.29 -2.46 16 2 C 0.08 1.45 0.78 -90.47 -0.07 1.38 16 3 C 0.14 2.43 4.85 -4.04 -0.02 2.41 16 4 N -0.71 -10.41 5.19 -61.49 -0.32 -10.73 16 5 C 0.54 7.93 7.65 -12.67 -0.10 7.83 16 6 O -0.54 -9.60 13.40 5.27 0.07 -9.53 16 7 C -0.21 -2.34 10.02 -37.81 -0.38 -2.72 16 8 C -0.04 -0.41 9.74 -36.12 -0.35 -0.77 16 9 C -0.12 -1.42 4.27 -91.76 -0.39 -1.81 16 10 C -0.19 -1.73 10.24 -26.69 -0.27 -2.00 16 11 C -0.16 -1.66 10.24 -26.69 -0.27 -1.94 16 12 C 0.16 3.72 4.13 -3.54 -0.01 3.71 16 13 N -0.59 -14.38 2.57 -171.83 -0.44 -14.82 16 14 C -0.25 -6.75 9.65 -15.06 -0.15 -6.89 16 15 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 16 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -25.62 11.16 55.49 0.62 -25.00 16 18 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 23 C 0.05 0.79 6.59 37.31 0.25 1.04 16 24 O -0.38 -7.11 10.17 -35.23 -0.36 -7.47 16 25 H 0.07 1.37 6.11 -51.93 -0.32 1.06 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.60 6.59 -51.93 -0.34 0.25 16 28 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.40 5.10 6.98 -40.82 -0.28 4.81 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.85 6.38 -51.93 -0.33 1.52 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 2.47 6.12 -51.93 -0.32 2.16 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.80 6.26 -51.93 -0.32 0.47 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -30.47 351.20 -8.71 -39.18 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.95 Total: 6.91 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.59 Total: 0.00 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.14 Total: -50.55 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.29 Total: -17.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.47 -8.71 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.606 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds