Wall clock time and date at job start Tue Mar 31 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.51158 * 2 1 4 4 N 1.46494 * 109.47401 * 304.90187 * 3 2 1 5 5 C 1.34777 * 119.99962 * 180.02562 * 4 3 2 6 6 O 1.21607 * 120.00100 * 359.97438 * 5 4 3 7 7 C 1.47098 * 119.99788 * 179.97438 * 5 4 3 8 8 C 1.32995 * 120.00236 * 172.82128 * 7 5 4 9 9 C 1.50705 * 119.99293 * 352.57351 * 8 7 5 10 10 C 1.53013 * 117.49597 * 180.60766 * 9 8 7 11 11 C 1.53005 * 117.49794 * 111.95464 * 9 8 7 12 12 C 1.53287 * 109.51049 * 120.15531 * 2 1 3 13 13 N 1.47157 * 108.38759 * 67.62024 * 12 2 1 14 14 C 1.36935 * 120.98178 * 230.55426 * 13 12 2 15 15 H 1.07995 * 119.99467 * 154.53040 * 14 13 12 16 16 C 1.38809 * 120.00378 * 334.52933 * 14 13 12 17 17 N 1.31624 * 119.99738 * 341.86066 * 16 14 13 18 18 Si 1.86797 * 120.00006 * 161.85900 * 16 14 13 19 19 H 1.48497 * 109.46935 * 94.96289 * 18 16 14 20 20 H 1.48497 * 109.47248 * 214.95963 * 18 16 14 21 21 H 1.48498 * 109.47184 * 334.96201 * 18 16 14 22 22 C 1.47157 * 118.03096 * 50.53347 * 13 12 2 23 23 C 1.53288 * 108.38448 * 309.46419 * 22 13 12 24 24 O 1.42965 * 109.51106 * 239.90282 * 2 1 3 25 25 H 1.08997 * 109.47257 * 180.09621 * 1 2 3 26 26 H 1.09000 * 109.46972 * 300.10088 * 1 2 3 27 27 H 1.08999 * 109.46761 * 60.10023 * 1 2 3 28 28 H 1.09005 * 109.46931 * 64.90387 * 3 2 1 29 29 H 1.09002 * 109.46791 * 184.89645 * 3 2 1 30 30 H 0.97003 * 119.99676 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.00512 * 352.82278 * 7 5 4 32 32 H 1.08002 * 120.00786 * 172.57489 * 8 7 5 33 33 H 1.08996 * 115.55211 * 326.27779 * 9 8 7 34 34 H 1.09004 * 117.49426 * 0.02562 * 10 9 8 35 35 H 1.08998 * 117.49586 * 145.01739 * 10 9 8 36 36 H 1.08998 * 117.49737 * 214.97637 * 11 9 8 37 37 H 1.08997 * 117.49561 * 359.97047 * 11 9 8 38 38 H 1.09005 * 109.68069 * 187.34514 * 12 2 1 39 39 H 1.08999 * 109.68682 * 307.85902 * 12 2 1 40 40 H 0.97000 * 119.99919 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.67538 * 189.73985 * 22 13 12 42 42 H 1.08997 * 109.68300 * 69.18917 * 22 13 12 43 43 H 1.09007 * 109.51370 * 172.22736 * 23 22 13 44 44 H 1.08996 * 109.51404 * 292.33048 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 7 1.4594 2.1664 -1.1327 5 6 1.7696 3.4623 -1.3349 6 8 2.5320 4.0305 -0.5769 7 6 1.1858 4.1894 -2.4727 8 6 1.3761 5.5002 -2.5924 9 6 2.0441 6.2691 -1.4817 10 6 2.2214 7.7768 -1.6735 11 6 3.4338 6.8463 -1.7584 12 6 2.0420 -0.7258 1.2493 13 7 1.6959 -2.1513 1.1325 14 6 1.0608 -2.8083 2.1524 15 1 0.4575 -3.6788 1.9408 16 6 1.1923 -2.3556 3.4579 17 7 2.1786 -1.5445 3.7770 18 14 -0.0304 -2.8975 4.7620 19 1 0.5108 -4.0733 5.4899 20 1 -0.2589 -1.7852 5.7190 21 1 -1.3151 -3.2647 4.1140 22 6 2.0521 -2.8497 -0.1128 23 6 1.5396 -2.0204 -1.2958 24 8 2.0076 -0.6758 -1.1659 25 1 -0.3633 -1.0276 0.0017 26 1 -0.3633 0.5154 0.8891 27 1 -0.3633 0.5123 -0.8909 28 1 1.7516 1.9302 0.9307 29 1 3.1276 1.4426 -0.0877 30 1 0.8515 1.7131 -1.7376 31 1 0.6027 3.6589 -3.2108 32 1 1.0520 6.0137 -3.4856 33 1 1.8397 5.9107 -0.4728 34 1 1.8545 8.2124 -2.6028 35 1 2.1340 8.4101 -0.7906 36 1 4.1436 6.8678 -0.9315 37 1 3.8651 6.6694 -2.7437 38 1 3.1241 -0.6154 1.3205 39 1 1.5710 -0.3047 2.1375 40 1 2.2703 -1.2278 4.6892 41 1 1.5872 -3.8355 -0.1267 42 1 3.1352 -2.9531 -0.1789 43 1 1.9113 -2.4468 -2.2276 44 1 0.4497 -2.0284 -1.3010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107839676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:19 Heat of formation + Delta-G solvation = -27.006655 kcal Electronic energy + Delta-G solvation = -24262.591490 eV Core-core repulsion = 20795.527043 eV Total energy + Delta-G solvation = -3467.064447 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15531 -40.29020 -38.17763 -36.50408 -35.87792 -33.59118 -33.22852 -32.81124 -29.58686 -28.15762 -27.53734 -25.03263 -24.60457 -23.18700 -22.91709 -22.06422 -20.75412 -20.09927 -18.92498 -17.98590 -17.41974 -17.06862 -16.83879 -16.17163 -16.08680 -15.88230 -15.58187 -15.52342 -15.17395 -14.80003 -14.61156 -14.24320 -13.97460 -13.85187 -13.43051 -13.19058 -12.93911 -12.78469 -12.60284 -12.53477 -12.42670 -12.39553 -12.17117 -11.96342 -11.92837 -11.83005 -11.27918 -11.11215 -10.80182 -10.57832 -10.48824 -10.14417 -9.82266 -8.73687 -7.90574 -5.36075 0.45063 1.44967 1.47223 1.56844 2.28102 2.33578 2.48794 2.79613 3.10989 3.24260 3.50152 3.71125 3.90068 4.00611 4.04410 4.08458 4.10893 4.21422 4.41344 4.43193 4.46523 4.56885 4.59017 4.64352 4.70976 4.79110 4.79733 4.96323 5.01734 5.04057 5.11893 5.20278 5.24210 5.28295 5.34842 5.35589 5.48941 5.52308 5.61079 5.62274 6.28210 6.37074 6.67551 7.05799 7.34631 7.75650 8.29525 9.15300 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.003496 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.257632 B = 8006.701334 C = 8713.267237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.152 3.848 4 N -0.706 5.706 5 C 0.528 3.472 6 O -0.579 6.579 7 C -0.223 4.223 8 C -0.025 4.025 9 C -0.148 4.148 10 C -0.164 4.164 11 C -0.168 4.168 12 C 0.168 3.832 13 N -0.607 5.607 14 C -0.259 4.259 15 H 0.075 0.925 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.288 1.288 20 H -0.294 1.294 21 H -0.265 1.265 22 C 0.101 3.899 23 C 0.053 3.947 24 O -0.386 6.386 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.413 0.587 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.101 0.899 38 H -0.010 1.010 39 H 0.066 0.934 40 H 0.250 0.750 41 H 0.073 0.927 42 H 0.011 0.989 43 H 0.118 0.882 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 12.283 -16.580 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C 0.026 3.974 4 N -0.358 5.358 5 C 0.319 3.681 6 O -0.461 6.461 7 C -0.244 4.244 8 C -0.044 4.044 9 C -0.166 4.166 10 C -0.200 4.200 11 C -0.205 4.205 12 C 0.041 3.959 13 N -0.331 5.331 14 C -0.389 4.389 15 H 0.092 0.908 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.215 1.215 20 H -0.221 1.221 21 H -0.189 1.189 22 C -0.024 4.024 23 C -0.025 4.025 24 O -0.305 6.305 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.251 0.749 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.008 0.992 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.136 0.864 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.828 12.762 -16.021 21.044 hybrid contribution -0.268 -1.014 1.487 1.819 sum -5.095 11.748 -14.534 19.371 Atomic orbital electron populations 1.22101 0.93880 1.02848 1.02114 1.22177 0.94720 0.90564 0.87244 1.20926 0.97574 0.89106 0.89750 1.45805 1.48834 1.11146 1.30010 1.19369 0.81252 0.81669 0.85792 1.90757 1.38118 1.68030 1.49225 1.22727 1.06198 0.96069 0.99366 1.23420 0.90760 0.93681 0.96549 1.21446 1.00714 0.95310 0.99168 1.23185 1.01200 0.91309 1.04335 1.22834 0.90787 1.03943 1.02898 1.21044 0.95268 0.84425 0.95156 1.44276 1.68638 1.05563 1.14669 1.19515 1.21592 1.11567 0.86196 0.90768 1.25784 0.98922 1.00854 0.99100 1.70206 1.30845 1.38759 1.18437 0.85277 0.79503 0.76894 0.78901 1.21490 1.22077 1.18935 1.21829 0.97003 0.96410 0.87185 1.23111 0.99154 0.81767 0.98452 1.87838 1.73268 1.26507 1.42912 0.91953 0.92732 0.90225 0.91476 0.93085 0.74928 0.81938 0.81720 0.88678 0.86356 0.88522 0.90107 0.88024 0.99197 0.91556 0.94108 0.90871 0.97070 0.86440 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 7.86 71.98 0.57 -4.40 16 2 C 0.09 3.52 0.78 -10.69 -0.01 3.51 16 3 C 0.15 5.43 4.85 86.38 0.42 5.85 16 4 N -0.71 -19.93 5.19 -466.72 -2.42 -22.35 16 5 C 0.53 15.34 7.65 86.57 0.66 16.01 16 6 O -0.58 -21.38 13.40 -4.05 -0.05 -21.44 16 7 C -0.22 -4.31 10.02 23.43 0.23 -4.08 16 8 C -0.02 -0.43 9.74 24.52 0.24 -0.19 16 9 C -0.15 -3.30 4.27 -11.53 -0.05 -3.35 16 10 C -0.16 -2.63 10.24 30.62 0.31 -2.32 16 11 C -0.17 -3.46 10.24 30.62 0.31 -3.15 16 12 C 0.17 8.19 4.13 86.35 0.36 8.55 16 13 N -0.61 -30.05 2.57 -697.55 -1.79 -31.84 16 14 C -0.26 -13.88 9.65 84.03 0.81 -13.07 16 15 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 16 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 17 N -0.94 -55.64 11.16 21.65 0.24 -55.40 16 18 Si 0.97 44.29 29.59 68.60 2.03 46.32 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 C 0.10 4.08 6.73 86.35 0.58 4.66 16 23 C 0.05 1.67 6.59 72.08 0.48 2.15 16 24 O -0.39 -13.72 10.17 -148.98 -1.52 -15.24 16 25 H 0.06 2.20 6.11 -2.39 -0.01 2.19 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 2.00 6.59 -2.39 -0.02 1.98 16 28 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.41 9.41 6.98 -92.71 -0.65 8.77 16 31 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.10 2.82 6.38 -2.39 -0.02 2.80 16 34 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 39 H 0.07 3.62 6.12 -2.39 -0.01 3.61 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.12 2.92 8.14 -2.38 -0.02 2.90 16 44 H 0.06 1.85 6.26 -2.39 -0.01 1.83 16 Total: -1.00 -70.04 351.20 2.17 -67.87 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.34 Total: 24.31 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.33 Total: 7.76 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -3.97 Total: -109.59 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.57 Total: -36.67 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.04 2.17 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107839676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.868 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds