Wall clock time and date at job start Tue Mar 31 2020 07:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50709 * 119.99482 * 2 1 4 4 H 1.08995 * 109.69944 * 355.09537 * 3 2 1 5 5 C 1.53189 * 109.58540 * 234.73557 * 3 2 1 6 6 C 1.53041 * 109.31199 * 185.57958 * 5 3 2 7 7 C 1.53039 * 109.53797 * 61.36424 * 6 5 3 8 8 C 1.53632 * 109.24342 * 298.51355 * 7 6 5 9 9 N 1.46926 * 109.58123 * 115.44633 * 3 2 1 10 10 C 1.34779 * 120.63353 * 353.37424 * 9 3 2 11 11 O 1.21346 * 119.99743 * 8.72050 * 10 9 3 12 12 C 1.49451 * 119.99646 * 188.71701 * 10 9 3 13 13 O 1.21354 * 120.00005 * 6.02659 * 12 10 9 14 14 N 1.34773 * 119.99724 * 186.01942 * 12 10 9 15 15 C 1.46499 * 120.00333 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.47519 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47110 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46983 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00148 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99805 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00222 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99985 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47328 * 60.00316 * 22 20 18 24 24 H 1.48503 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47080 * 299.99925 * 22 20 18 26 26 H 1.08009 * 119.99585 * 174.97141 * 1 2 3 27 27 H 1.07994 * 120.00838 * 354.96399 * 1 2 3 28 28 H 1.07997 * 120.00576 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.49982 * 305.53019 * 5 3 2 30 30 H 1.09000 * 109.49702 * 65.63078 * 5 3 2 31 31 H 1.08996 * 109.46378 * 181.38842 * 6 5 3 32 32 H 1.09006 * 109.45797 * 301.34506 * 6 5 3 33 33 H 1.08999 * 109.49617 * 58.59075 * 7 6 5 34 34 H 1.09000 * 109.49890 * 178.65310 * 7 6 5 35 35 H 1.09000 * 109.73758 * 295.11959 * 8 7 6 36 36 H 1.08996 * 109.66295 * 174.54988 * 8 7 6 37 37 H 0.97001 * 120.00329 * 0.02562 * 14 12 10 38 38 H 1.08998 * 109.47002 * 59.99812 * 15 14 12 39 39 H 1.08998 * 109.46946 * 300.00968 * 15 14 12 40 40 H 1.09000 * 109.47265 * 60.00105 * 16 15 14 41 41 H 1.08999 * 109.47168 * 299.99701 * 16 15 14 42 42 H 1.09000 * 109.46954 * 299.99372 * 17 16 15 43 43 H 1.08999 * 109.47776 * 59.99979 * 17 16 15 44 44 H 0.97004 * 120.00085 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3616 2.1346 -0.0877 5 6 3.0418 1.3334 -1.1784 6 6 3.9004 2.5974 -1.0933 7 6 4.7093 2.5801 0.2058 8 6 3.7456 2.5691 1.4022 9 7 2.8247 1.4344 1.2500 10 6 2.6770 0.5322 2.2404 11 8 2.0349 -0.4795 2.0487 12 6 3.3040 0.7779 3.5745 13 8 3.8524 1.8364 3.8015 14 7 3.2602 -0.1760 4.5256 15 6 3.8743 0.0650 5.8337 16 6 3.6854 -1.1672 6.7206 17 6 4.3262 -0.9153 8.0869 18 6 4.1396 -2.1288 8.9607 19 1 3.6159 -2.9931 8.5799 20 6 4.6374 -2.1356 10.2465 21 7 5.2747 -1.0829 10.7105 22 14 4.4055 -3.6395 11.3299 23 1 5.0491 -4.8148 10.6898 24 1 5.0276 -3.3950 12.6560 25 1 2.9548 -3.9041 11.5055 26 1 -0.5400 -0.9318 -0.0820 27 1 -0.5401 0.9316 0.0821 28 1 1.8501 -0.9352 -0.0004 29 1 3.6843 0.4538 -1.1390 30 1 2.4837 1.3352 -2.1147 31 1 4.5807 2.6323 -1.9442 32 1 3.2556 3.4761 -1.1078 33 1 5.3361 1.6888 0.2322 34 1 5.3384 3.4688 0.2545 35 1 3.1782 3.4994 1.4264 36 1 4.3109 2.4593 2.3276 37 1 2.8220 -1.0221 4.3441 38 1 3.4015 0.9273 6.3037 39 1 4.9389 0.2598 5.7048 40 1 4.1585 -2.0293 6.2504 41 1 2.6208 -1.3624 6.8495 42 1 5.3908 -0.7199 7.9584 43 1 3.8528 -0.0533 8.5570 44 1 5.6252 -1.0878 11.6149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117267846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:27 Heat of formation + Delta-G solvation = -47.063852 kcal Electronic energy + Delta-G solvation = -23565.530228 eV Core-core repulsion = 20097.596036 eV Total energy + Delta-G solvation = -3467.934192 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18595 -39.12764 -37.69669 -35.73727 -34.24177 -33.50956 -32.97451 -31.27657 -30.11947 -27.42431 -26.03892 -24.26929 -23.58993 -22.49835 -21.10116 -20.71286 -20.16534 -19.51718 -17.52375 -16.97789 -16.36799 -16.15506 -15.84521 -15.24313 -15.14040 -14.88330 -14.48774 -14.33048 -14.18341 -14.16063 -13.69177 -13.57626 -13.14642 -12.52591 -12.30918 -12.10673 -11.90242 -11.85774 -11.76730 -11.39217 -11.25657 -10.99810 -10.90229 -10.78723 -10.66567 -10.61713 -9.93255 -9.84285 -9.50953 -9.18309 -9.08745 -8.92096 -8.61741 -8.39010 -6.03947 -4.07119 1.37765 1.95307 2.58625 3.15710 3.31648 3.36246 3.38342 3.48265 4.25549 4.42131 4.44648 4.51315 4.55033 4.72401 4.88043 4.89803 5.15669 5.30517 5.31986 5.43226 5.48529 5.53847 5.56075 5.61463 5.66015 5.70534 5.78201 5.84147 6.00312 6.04952 6.12871 6.37699 6.51388 6.53015 6.66196 6.70918 6.92037 6.94089 7.29288 7.59712 7.71130 7.71450 7.94128 8.01954 8.35343 8.99154 9.57312 11.07294 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029461 B = 0.002630 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.177035 B =10645.268304 C =11345.009528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C 0.167 3.833 4 H 0.080 0.920 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.136 4.136 8 C 0.066 3.934 9 N -0.580 5.580 10 C 0.509 3.491 11 O -0.505 6.505 12 C 0.501 3.499 13 O -0.518 6.518 14 N -0.688 5.688 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.025 3.975 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 7.373 -25.210 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.133 4.133 3 C 0.065 3.935 4 H 0.098 0.902 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.174 4.174 8 C -0.055 4.055 9 N -0.314 5.314 10 C 0.292 3.708 11 O -0.380 6.380 12 C 0.282 3.718 13 O -0.397 6.397 14 N -0.339 5.339 15 C -0.009 4.009 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.247 0.753 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.503 7.651 -24.951 26.483 hybrid contribution -0.336 -1.094 0.584 1.285 sum -4.839 6.557 -24.366 25.693 Atomic orbital electron populations 1.23541 0.95513 1.01529 1.04060 1.22699 0.95931 0.97015 0.97657 1.20613 0.92507 0.96943 0.83401 0.90192 1.21923 0.97965 0.99083 0.97375 1.21566 0.98736 0.97692 0.97997 1.22033 0.98077 1.02860 0.94441 1.23058 0.91948 0.87822 1.02709 1.48142 1.42246 1.26466 1.14542 1.20307 0.81593 0.83464 0.85483 1.90747 1.40656 1.26045 1.80588 1.20113 0.81125 0.84837 0.85714 1.90467 1.44462 1.25035 1.79757 1.46109 1.55709 1.18081 1.13975 1.21866 0.98086 1.00658 0.80303 1.21928 1.01525 0.94701 0.97927 1.19024 0.95976 0.97425 0.88826 1.21164 1.36311 1.00850 0.97889 0.92627 1.25021 0.95153 0.96181 0.98051 1.69952 1.37449 1.28899 1.17025 0.86631 0.78417 0.83161 0.79637 1.20216 1.21262 1.20215 0.88351 0.89272 0.86291 0.91119 0.90439 0.91481 0.91699 0.91520 0.90423 0.91372 0.83737 0.75271 0.91015 0.91004 0.92440 0.92424 0.96202 0.96200 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.09 14.29 29.02 0.41 -1.68 16 2 C -0.11 -1.21 5.76 -36.02 -0.21 -1.42 16 3 C 0.17 1.58 3.23 -68.75 -0.22 1.36 16 4 H 0.08 0.69 7.82 -51.93 -0.41 0.29 16 5 C -0.13 -0.93 5.35 -26.61 -0.14 -1.07 16 6 C -0.12 -0.80 5.88 -26.69 -0.16 -0.96 16 7 C -0.14 -1.06 6.10 -26.38 -0.16 -1.22 16 8 C 0.07 0.65 6.02 -3.48 -0.02 0.63 16 9 N -0.58 -6.49 2.97 -166.77 -0.49 -6.99 16 10 C 0.51 6.85 7.66 -11.58 -0.09 6.76 16 11 O -0.50 -7.37 12.91 5.50 0.07 -7.30 16 12 C 0.50 7.35 7.75 -11.59 -0.09 7.26 16 13 O -0.52 -8.27 13.16 5.49 0.07 -8.20 16 14 N -0.69 -10.11 5.55 -60.74 -0.34 -10.44 16 15 C 0.11 1.89 5.67 -4.05 -0.02 1.87 16 16 C -0.12 -2.36 5.27 -26.74 -0.14 -2.50 16 17 C 0.03 0.62 4.97 -27.88 -0.14 0.49 16 18 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 22 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H 0.10 0.94 8.06 -52.48 -0.42 0.51 16 27 H 0.09 0.82 7.86 -52.49 -0.41 0.41 16 28 H 0.12 1.39 7.26 -52.49 -0.38 1.01 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.15 1.75 4.28 -54.98 -0.24 1.51 16 37 H 0.41 5.56 7.96 -40.82 -0.32 5.23 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -30.44 356.39 -8.21 -38.65 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.22 Total: 2.11 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.39 Total: -3.77 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.10 Total: -43.28 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.14 Total: -15.50 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.44 -8.21 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117267846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.410 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds