Wall clock time and date at job start Tue Mar 31 2020 07:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50709 * 119.99482 * 2 1 4 4 H 1.08995 * 109.69944 * 355.09537 * 3 2 1 5 5 C 1.53189 * 109.58540 * 234.73557 * 3 2 1 6 6 C 1.53041 * 109.31199 * 185.57958 * 5 3 2 7 7 C 1.53039 * 109.53797 * 61.36424 * 6 5 3 8 8 C 1.53632 * 109.24342 * 298.51355 * 7 6 5 9 9 N 1.46926 * 109.58123 * 115.44633 * 3 2 1 10 10 C 1.34779 * 120.63353 * 353.37424 * 9 3 2 11 11 O 1.21346 * 119.99743 * 8.72050 * 10 9 3 12 12 C 1.49451 * 119.99646 * 188.71701 * 10 9 3 13 13 O 1.21354 * 120.00005 * 6.02659 * 12 10 9 14 14 N 1.34773 * 119.99724 * 186.01942 * 12 10 9 15 15 C 1.46499 * 120.00333 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.47519 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47110 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46983 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00148 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99805 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00222 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99985 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47328 * 60.00316 * 22 20 18 24 24 H 1.48503 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47080 * 299.99925 * 22 20 18 26 26 H 1.08009 * 119.99585 * 174.97141 * 1 2 3 27 27 H 1.07994 * 120.00838 * 354.96399 * 1 2 3 28 28 H 1.07997 * 120.00576 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.49982 * 305.53019 * 5 3 2 30 30 H 1.09000 * 109.49702 * 65.63078 * 5 3 2 31 31 H 1.08996 * 109.46378 * 181.38842 * 6 5 3 32 32 H 1.09006 * 109.45797 * 301.34506 * 6 5 3 33 33 H 1.08999 * 109.49617 * 58.59075 * 7 6 5 34 34 H 1.09000 * 109.49890 * 178.65310 * 7 6 5 35 35 H 1.09000 * 109.73758 * 295.11959 * 8 7 6 36 36 H 1.08996 * 109.66295 * 174.54988 * 8 7 6 37 37 H 0.97001 * 120.00329 * 0.02562 * 14 12 10 38 38 H 1.08998 * 109.47002 * 59.99812 * 15 14 12 39 39 H 1.08998 * 109.46946 * 300.00968 * 15 14 12 40 40 H 1.09000 * 109.47265 * 60.00105 * 16 15 14 41 41 H 1.08999 * 109.47168 * 299.99701 * 16 15 14 42 42 H 1.09000 * 109.46954 * 299.99372 * 17 16 15 43 43 H 1.08999 * 109.47776 * 59.99979 * 17 16 15 44 44 H 0.97004 * 120.00085 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3616 2.1346 -0.0877 5 6 3.0418 1.3334 -1.1784 6 6 3.9004 2.5974 -1.0933 7 6 4.7093 2.5801 0.2058 8 6 3.7456 2.5691 1.4022 9 7 2.8247 1.4344 1.2500 10 6 2.6770 0.5322 2.2404 11 8 2.0349 -0.4795 2.0487 12 6 3.3040 0.7779 3.5745 13 8 3.8524 1.8364 3.8015 14 7 3.2602 -0.1760 4.5256 15 6 3.8743 0.0650 5.8337 16 6 3.6854 -1.1672 6.7206 17 6 4.3262 -0.9153 8.0869 18 6 4.1396 -2.1288 8.9607 19 1 3.6159 -2.9931 8.5799 20 6 4.6374 -2.1356 10.2465 21 7 5.2747 -1.0829 10.7105 22 14 4.4055 -3.6395 11.3299 23 1 5.0491 -4.8148 10.6898 24 1 5.0276 -3.3950 12.6560 25 1 2.9548 -3.9041 11.5055 26 1 -0.5400 -0.9318 -0.0820 27 1 -0.5401 0.9316 0.0821 28 1 1.8501 -0.9352 -0.0004 29 1 3.6843 0.4538 -1.1390 30 1 2.4837 1.3352 -2.1147 31 1 4.5807 2.6323 -1.9442 32 1 3.2556 3.4761 -1.1078 33 1 5.3361 1.6888 0.2322 34 1 5.3384 3.4688 0.2545 35 1 3.1782 3.4994 1.4264 36 1 4.3109 2.4593 2.3276 37 1 2.8220 -1.0221 4.3441 38 1 3.4015 0.9273 6.3037 39 1 4.9389 0.2598 5.7048 40 1 4.1585 -2.0293 6.2504 41 1 2.6208 -1.3624 6.8495 42 1 5.3908 -0.7199 7.9584 43 1 3.8528 -0.0533 8.5570 44 1 5.6252 -1.0878 11.6149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117267846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:26 Heat of formation + Delta-G solvation = -65.852076 kcal Electronic energy + Delta-G solvation = -23566.344947 eV Core-core repulsion = 20097.596036 eV Total energy + Delta-G solvation = -3468.748910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.19767 -40.19827 -38.61995 -37.16350 -35.30948 -35.00691 -33.88010 -33.04547 -30.83661 -29.05359 -27.17457 -25.52531 -24.53286 -23.74952 -22.40093 -21.95073 -20.87207 -20.63319 -18.67791 -18.43245 -17.89261 -17.27842 -16.94525 -16.48856 -16.27366 -16.16297 -15.80715 -15.43355 -15.18735 -14.91054 -14.63345 -14.43419 -14.25726 -14.07757 -13.79238 -13.54136 -13.24808 -12.99307 -12.73582 -12.57647 -12.51477 -12.44062 -12.06613 -11.90685 -11.72324 -11.68502 -11.50702 -11.40333 -11.23244 -10.71966 -10.54605 -10.30706 -9.87026 -9.53609 -8.19816 -6.30812 0.27264 1.02866 1.41744 1.44262 1.52097 1.65834 2.05063 2.40591 2.48142 3.14053 3.23451 3.65453 3.88036 3.91816 4.05831 4.07288 4.16189 4.17388 4.24064 4.44796 4.51600 4.60624 4.70649 4.83550 4.86375 4.90812 4.96561 5.00730 5.03564 5.13250 5.14375 5.18004 5.28568 5.41597 5.45427 5.51520 5.70291 5.72189 5.83969 5.86517 5.96488 6.17708 6.23725 6.66298 6.85920 6.88163 7.38575 8.91891 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029461 B = 0.002630 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.177035 B =10645.268304 C =11345.009528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.063 3.937 9 N -0.573 5.573 10 C 0.508 3.492 11 O -0.521 6.521 12 C 0.500 3.500 13 O -0.533 6.533 14 N -0.685 5.685 15 C 0.128 3.872 16 C -0.106 4.106 17 C 0.026 3.974 18 C -0.544 4.544 19 H 0.063 0.937 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.267 1.267 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.418 0.582 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.065 0.935 42 H -0.003 1.003 43 H -0.004 1.004 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 7.206 -26.873 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.143 4.143 3 C 0.063 3.937 4 H 0.112 0.888 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.170 4.170 8 C -0.058 4.058 9 N -0.306 5.306 10 C 0.290 3.710 11 O -0.398 6.398 12 C 0.282 3.718 13 O -0.412 6.412 14 N -0.336 5.336 15 C 0.005 3.995 16 C -0.144 4.144 17 C -0.012 4.012 18 C -0.582 4.582 19 H 0.082 0.918 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.789 3.211 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.192 1.192 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.242 7.493 -26.656 28.181 hybrid contribution -0.113 -0.980 1.049 1.440 sum -5.355 6.513 -25.607 26.960 Atomic orbital electron populations 1.23689 0.95452 1.02160 1.03147 1.22686 0.96185 0.97043 0.98370 1.20842 0.93036 0.96760 0.83108 0.88815 1.21918 0.97628 0.99194 0.97133 1.21563 0.98826 0.97541 0.97614 1.22012 0.97708 1.03124 0.94149 1.23061 0.92131 0.87703 1.02881 1.48272 1.41903 1.25948 1.14514 1.20042 0.81720 0.83911 0.85331 1.90748 1.41554 1.26721 1.80821 1.20432 0.80738 0.84406 0.86233 1.90491 1.44932 1.25573 1.80250 1.45922 1.55807 1.18657 1.13225 1.21482 0.97931 0.99115 0.80993 1.21636 1.01383 0.96041 0.95323 1.18919 0.94819 0.95820 0.91607 1.21655 1.36087 1.01833 0.98622 0.91840 1.25970 0.94796 0.99342 0.99744 1.70088 1.38567 1.31143 1.17523 0.85510 0.78772 0.79320 0.77505 1.19139 1.21019 1.19199 0.88196 0.88207 0.87837 0.92147 0.88580 0.89947 0.90581 0.92537 0.88918 0.90226 0.85888 0.74459 0.91718 0.91485 0.91503 0.91634 0.98457 0.98551 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.87 14.29 67.78 0.97 -2.90 16 2 C -0.12 -2.50 5.76 25.65 0.15 -2.35 16 3 C 0.16 2.79 3.23 44.23 0.14 2.94 16 4 H 0.09 1.38 7.82 -2.39 -0.02 1.36 16 5 C -0.12 -1.51 5.35 30.67 0.16 -1.34 16 6 C -0.12 -1.21 5.88 30.62 0.18 -1.03 16 7 C -0.13 -1.80 6.10 30.82 0.19 -1.61 16 8 C 0.06 1.18 6.02 86.51 0.52 1.70 16 9 N -0.57 -12.21 2.97 -799.90 -2.37 -14.58 16 10 C 0.51 13.44 7.66 87.27 0.67 14.11 16 11 O -0.52 -15.01 12.91 -3.23 -0.04 -15.05 16 12 C 0.50 14.62 7.75 87.27 0.68 15.29 16 13 O -0.53 -17.07 13.16 -3.26 -0.04 -17.11 16 14 N -0.68 -19.94 5.55 -464.43 -2.58 -22.52 16 15 C 0.13 4.30 5.67 86.38 0.49 4.79 16 16 C -0.11 -4.06 5.27 30.59 0.16 -3.90 16 17 C 0.03 1.33 4.97 29.85 0.15 1.48 16 18 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 21 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 22 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H 0.10 1.80 8.06 -2.91 -0.02 1.78 16 27 H 0.10 1.64 7.86 -2.91 -0.02 1.61 16 28 H 0.10 2.41 7.26 -2.91 -0.02 2.39 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.12 2.94 4.28 -50.74 -0.22 2.72 16 37 H 0.42 11.06 7.96 -92.71 -0.74 10.33 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -65.47 356.39 2.46 -63.01 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.03 Total: 19.04 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.15 Total: -2.47 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.66 Total: -93.26 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.08 Total: -32.16 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -65.47 2.46 -63.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117267846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.843 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds