Wall clock time and date at job start Tue Mar 31 2020 07:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50692 * 120.00235 * 2 1 4 4 C 1.52998 * 109.46976 * 124.99919 * 3 2 1 5 5 C 1.53006 * 109.46913 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47082 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00243 * 180.02562 * 6 5 4 8 8 O 1.21357 * 119.99737 * 359.97438 * 7 6 5 9 9 C 1.49450 * 120.00173 * 179.97438 * 7 6 5 10 10 O 1.21345 * 120.00237 * 353.32917 * 9 7 6 11 11 N 1.34779 * 119.99959 * 173.33642 * 9 7 6 12 12 C 1.46926 * 120.62965 * 173.06654 * 11 9 7 13 13 C 1.53192 * 108.89029 * 233.55576 * 12 11 9 14 14 C 1.53071 * 109.29669 * 305.57921 * 13 12 11 15 15 C 1.50702 * 109.44365 * 181.24072 * 14 13 12 16 16 H 1.08007 * 119.99829 * 239.79782 * 15 14 13 17 17 C 1.37879 * 120.00166 * 59.78883 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46875 * 60.00306 * 19 17 15 21 21 H 1.48495 * 109.46888 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46938 * 300.00394 * 19 17 15 23 23 C 1.53039 * 109.66157 * 61.15585 * 14 13 12 24 24 C 1.46927 * 120.62872 * 353.08530 * 11 9 7 25 25 H 1.08001 * 120.00161 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00213 * 179.97438 * 1 2 3 27 27 H 1.08011 * 119.99643 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47055 * 5.00390 * 3 2 1 29 29 H 1.08998 * 109.47369 * 245.00064 * 3 2 1 30 30 H 1.09001 * 109.47337 * 60.00350 * 4 3 2 31 31 H 1.09003 * 109.47515 * 299.99940 * 4 3 2 32 32 H 1.08993 * 109.47263 * 59.99970 * 5 4 3 33 33 H 1.09003 * 109.47332 * 299.99584 * 5 4 3 34 34 H 0.96998 * 119.99852 * 359.97438 * 6 5 4 35 35 H 1.08995 * 109.58498 * 353.41300 * 12 11 9 36 36 H 1.09003 * 109.58798 * 113.70109 * 12 11 9 37 37 H 1.08998 * 109.49941 * 65.39130 * 13 12 11 38 38 H 1.09008 * 109.49729 * 185.48788 * 13 12 11 39 39 H 1.09009 * 109.34867 * 301.12720 * 14 13 12 40 40 H 0.97002 * 119.99706 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.49875 * 178.74934 * 23 14 13 42 42 H 1.09001 * 109.52161 * 58.66408 * 23 14 13 43 43 H 1.08997 * 109.58946 * 246.15605 * 24 11 9 44 44 H 1.08998 * 109.59100 * 6.44429 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3329 1.1816 5 6 3.7996 2.6582 1.1820 6 7 4.7303 2.6847 2.3131 7 6 5.5146 3.7620 2.5154 8 8 5.4501 4.7098 1.7603 9 6 6.4636 3.7892 3.6696 10 8 6.4436 2.8979 4.4927 11 7 7.3415 4.8040 3.7963 12 6 8.1752 4.9266 4.9999 13 6 7.9941 6.3296 5.5878 14 6 8.2881 7.3728 4.5069 15 6 8.1406 8.7546 5.0900 16 1 7.4187 9.4420 4.6741 17 6 8.9270 9.1413 6.1545 18 7 9.8063 8.3044 6.6606 19 14 8.7436 10.8538 6.8777 20 1 7.3554 11.0361 7.3724 21 1 9.6969 11.0201 8.0040 22 1 9.0331 11.8667 5.8310 23 6 7.3061 7.2019 3.3457 24 6 7.4828 5.8087 2.7336 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 3.7399 0.5064 1.0921 31 1 2.4772 1.2354 2.1131 32 1 3.0945 3.4845 1.2718 33 1 4.3574 2.7562 0.2507 34 1 4.7815 1.9273 2.9168 35 1 7.8696 4.1807 5.7336 36 1 9.2218 4.7730 4.7367 37 1 6.9681 6.4485 5.9360 38 1 8.6805 6.4651 6.4237 39 1 9.3071 7.2390 4.1435 40 1 10.3598 8.5766 7.4093 41 1 7.5035 7.9600 2.5878 42 1 6.2856 7.3113 3.7126 43 1 8.4731 5.7296 2.2852 44 1 6.7220 5.6433 1.9708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117543461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:08 Heat of formation + Delta-G solvation = -51.310759 kcal Electronic energy + Delta-G solvation = -23439.054358 eV Core-core repulsion = 19970.936006 eV Total energy + Delta-G solvation = -3468.118352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68953 -38.57985 -37.08808 -36.73979 -34.81443 -33.43155 -31.40286 -31.05910 -30.17725 -27.12726 -26.14939 -24.15758 -22.66814 -22.16970 -21.72982 -20.36209 -20.06470 -18.80024 -17.33183 -16.85022 -16.43774 -16.27348 -15.64411 -15.53803 -14.95442 -14.71754 -14.51502 -14.15181 -13.83731 -13.54599 -13.17992 -13.04604 -12.76157 -12.71939 -12.27254 -12.17707 -12.11861 -11.79540 -11.30953 -11.23542 -11.17926 -10.95404 -10.87564 -10.62546 -10.32532 -10.06362 -9.76834 -9.54525 -9.50953 -9.37488 -8.93952 -8.56258 -8.33264 -8.07731 -5.99435 -4.05706 1.59437 1.86590 2.52481 3.32126 3.36761 3.39538 3.41269 3.75524 4.30001 4.43640 4.48751 4.53416 4.75731 4.85518 4.95450 5.18112 5.27015 5.29829 5.44802 5.50684 5.68911 5.70853 5.80021 5.90956 5.95295 6.05328 6.19270 6.22574 6.35450 6.35997 6.39399 6.62253 6.72834 6.83333 7.02828 7.06401 7.19356 7.33913 7.69519 7.75967 7.89728 7.96298 8.08848 8.25294 8.44168 8.97588 9.59034 11.05973 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.002611 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.105467 B =10720.891302 C =11053.390948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.092 4.092 4 C -0.128 4.128 5 C 0.115 3.885 6 N -0.705 5.705 7 C 0.511 3.489 8 O -0.506 6.506 9 C 0.498 3.502 10 O -0.542 6.542 11 N -0.560 5.560 12 C 0.104 3.896 13 C -0.122 4.122 14 C 0.045 3.955 15 C -0.511 4.511 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.117 4.117 24 C 0.047 3.953 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.107 0.893 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 -15.408 -11.913 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.166 4.166 5 C -0.008 4.008 6 N -0.358 5.358 7 C 0.293 3.707 8 O -0.382 6.382 9 C 0.280 3.720 10 O -0.422 6.422 11 N -0.291 5.291 12 C -0.017 4.017 13 C -0.160 4.160 14 C 0.027 3.973 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.156 4.156 24 C -0.073 4.073 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.124 0.876 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.591 -15.175 -11.876 23.019 hybrid contribution 0.036 0.643 0.820 1.043 sum -12.555 -14.532 -11.056 22.159 Atomic orbital electron populations 1.23890 0.96013 1.01945 1.01246 1.22935 0.96040 0.98417 0.99812 1.20670 0.98070 0.95803 0.98400 1.21760 0.98372 0.96892 0.99601 1.21498 0.91847 0.98306 0.89125 1.45816 1.39696 1.19620 1.30670 1.20509 0.81778 0.82772 0.85620 1.90366 1.66705 1.34022 1.47135 1.19826 0.82470 0.83368 0.86356 1.90702 1.70916 1.36632 1.43918 1.48221 1.35978 1.24452 1.20445 1.22087 0.93318 1.00915 0.85340 1.22042 1.01396 0.90479 1.02116 1.18690 0.94029 0.94141 0.90470 1.21175 1.20248 0.98254 1.15282 0.92727 1.24978 0.95141 0.97174 0.96777 1.69829 1.23067 1.34978 1.25227 0.86664 0.77843 0.84876 0.78645 1.20357 1.21341 1.20317 1.21915 1.00830 0.93400 0.99411 1.23306 1.04263 0.88822 0.90945 0.88511 0.88535 0.87326 0.91004 0.90480 0.90833 0.90830 0.90848 0.90841 0.75148 0.90483 0.91657 0.94302 0.87550 0.95514 0.92930 0.92094 0.93055 0.92466 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.12 14.32 29.02 0.42 -0.70 16 2 C -0.15 -0.90 9.52 -36.03 -0.34 -1.25 16 3 C -0.09 -0.52 5.66 -27.89 -0.16 -0.68 16 4 C -0.13 -0.79 5.31 -26.73 -0.14 -0.94 16 5 C 0.12 0.99 5.67 -4.04 -0.02 0.97 16 6 N -0.70 -7.90 5.55 -60.73 -0.34 -8.24 16 7 C 0.51 7.72 7.78 -11.59 -0.09 7.63 16 8 O -0.51 -8.40 13.10 5.49 0.07 -8.33 16 9 C 0.50 8.83 7.74 -11.58 -0.09 8.74 16 10 O -0.54 -10.26 15.94 5.50 0.09 -10.17 16 11 N -0.56 -10.64 2.97 -173.27 -0.52 -11.16 16 12 C 0.10 2.11 6.41 -3.71 -0.02 2.08 16 13 C -0.12 -2.86 5.16 -26.60 -0.14 -3.00 16 14 C 0.05 1.11 2.06 -91.71 -0.19 0.92 16 15 C -0.51 -13.94 8.56 -34.44 -0.29 -14.23 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -25.04 11.30 55.43 0.63 -24.41 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 24 C 0.05 0.87 6.27 -3.71 -0.02 0.85 16 25 H 0.10 0.53 7.84 -52.49 -0.41 0.11 16 26 H 0.10 0.48 8.06 -52.49 -0.42 0.05 16 27 H 0.11 0.56 8.06 -52.48 -0.42 0.14 16 28 H 0.07 0.41 7.79 -51.93 -0.40 0.00 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 4.14 7.96 -40.82 -0.33 3.81 16 35 H 0.08 1.53 7.05 -51.93 -0.37 1.16 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.11 2.75 6.03 -51.92 -0.31 2.44 16 39 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.14 2.51 3.78 -56.75 -0.21 2.30 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -29.99 356.98 -8.11 -38.10 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.07 Total: 3.26 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.33 Total: -0.66 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.23 Total: -43.80 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.16 Total: -18.50 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.99 -8.11 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117543461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.210 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds