Wall clock time and date at job start Tue Mar 31 2020 07:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50692 * 120.00235 * 2 1 4 4 C 1.52998 * 109.46976 * 124.99919 * 3 2 1 5 5 C 1.53006 * 109.46913 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47082 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00243 * 180.02562 * 6 5 4 8 8 O 1.21357 * 119.99737 * 359.97438 * 7 6 5 9 9 C 1.49450 * 120.00173 * 179.97438 * 7 6 5 10 10 O 1.21345 * 120.00237 * 353.32917 * 9 7 6 11 11 N 1.34779 * 119.99959 * 173.33642 * 9 7 6 12 12 C 1.46926 * 120.62965 * 173.06654 * 11 9 7 13 13 C 1.53192 * 108.89029 * 233.55576 * 12 11 9 14 14 C 1.53071 * 109.29669 * 305.57921 * 13 12 11 15 15 C 1.50702 * 109.44365 * 181.24072 * 14 13 12 16 16 H 1.08007 * 119.99829 * 239.79782 * 15 14 13 17 17 C 1.37879 * 120.00166 * 59.78883 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46875 * 60.00306 * 19 17 15 21 21 H 1.48495 * 109.46888 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46938 * 300.00394 * 19 17 15 23 23 C 1.53039 * 109.66157 * 61.15585 * 14 13 12 24 24 C 1.46927 * 120.62872 * 353.08530 * 11 9 7 25 25 H 1.08001 * 120.00161 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00213 * 179.97438 * 1 2 3 27 27 H 1.08011 * 119.99643 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47055 * 5.00390 * 3 2 1 29 29 H 1.08998 * 109.47369 * 245.00064 * 3 2 1 30 30 H 1.09001 * 109.47337 * 60.00350 * 4 3 2 31 31 H 1.09003 * 109.47515 * 299.99940 * 4 3 2 32 32 H 1.08993 * 109.47263 * 59.99970 * 5 4 3 33 33 H 1.09003 * 109.47332 * 299.99584 * 5 4 3 34 34 H 0.96998 * 119.99852 * 359.97438 * 6 5 4 35 35 H 1.08995 * 109.58498 * 353.41300 * 12 11 9 36 36 H 1.09003 * 109.58798 * 113.70109 * 12 11 9 37 37 H 1.08998 * 109.49941 * 65.39130 * 13 12 11 38 38 H 1.09008 * 109.49729 * 185.48788 * 13 12 11 39 39 H 1.09009 * 109.34867 * 301.12720 * 14 13 12 40 40 H 0.97002 * 119.99706 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.49875 * 178.74934 * 23 14 13 42 42 H 1.09001 * 109.52161 * 58.66408 * 23 14 13 43 43 H 1.08997 * 109.58946 * 246.15605 * 24 11 9 44 44 H 1.08998 * 109.59100 * 6.44429 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3329 1.1816 5 6 3.7996 2.6582 1.1820 6 7 4.7303 2.6847 2.3131 7 6 5.5146 3.7620 2.5154 8 8 5.4501 4.7098 1.7603 9 6 6.4636 3.7892 3.6696 10 8 6.4436 2.8979 4.4927 11 7 7.3415 4.8040 3.7963 12 6 8.1752 4.9266 4.9999 13 6 7.9941 6.3296 5.5878 14 6 8.2881 7.3728 4.5069 15 6 8.1406 8.7546 5.0900 16 1 7.4187 9.4420 4.6741 17 6 8.9270 9.1413 6.1545 18 7 9.8063 8.3044 6.6606 19 14 8.7436 10.8538 6.8777 20 1 7.3554 11.0361 7.3724 21 1 9.6969 11.0201 8.0040 22 1 9.0331 11.8667 5.8310 23 6 7.3061 7.2019 3.3457 24 6 7.4828 5.8087 2.7336 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 3.7399 0.5064 1.0921 31 1 2.4772 1.2354 2.1131 32 1 3.0945 3.4845 1.2718 33 1 4.3574 2.7562 0.2507 34 1 4.7815 1.9273 2.9168 35 1 7.8696 4.1807 5.7336 36 1 9.2218 4.7730 4.7367 37 1 6.9681 6.4485 5.9360 38 1 8.6805 6.4651 6.4237 39 1 9.3071 7.2390 4.1435 40 1 10.3598 8.5766 7.4093 41 1 7.5035 7.9600 2.5878 42 1 6.2856 7.3113 3.7126 43 1 8.4731 5.7296 2.2852 44 1 6.7220 5.6433 1.9708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117543461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:07 Heat of formation + Delta-G solvation = -69.526356 kcal Electronic energy + Delta-G solvation = -23439.844246 eV Core-core repulsion = 19970.936006 eV Total energy + Delta-G solvation = -3468.908239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.00918 -39.90437 -38.61068 -37.52490 -35.76389 -35.13586 -32.94048 -32.06482 -31.86132 -28.48681 -27.44735 -25.55970 -24.29795 -23.47953 -22.66253 -21.67762 -20.59398 -20.41736 -18.68670 -18.50467 -17.97786 -17.25246 -16.84965 -16.52228 -16.46851 -16.04490 -15.75694 -15.28089 -15.03087 -14.80903 -14.58400 -14.45885 -14.24219 -13.91331 -13.64939 -13.50382 -13.07528 -12.82175 -12.75878 -12.65741 -12.56019 -12.37236 -12.11933 -11.93971 -11.76930 -11.72261 -11.45089 -11.23059 -10.87848 -10.44940 -10.34971 -10.19061 -9.99316 -9.69282 -8.08037 -6.22010 0.29526 1.26875 1.42310 1.42925 1.47993 1.50633 2.09021 2.43617 2.49734 3.17837 3.26325 3.76372 4.02531 4.13035 4.23608 4.30850 4.35077 4.36848 4.43890 4.47171 4.60020 4.64975 4.68289 4.73446 4.82858 4.93464 4.95474 5.07505 5.12245 5.19652 5.21186 5.31498 5.36362 5.43425 5.46779 5.62525 5.81188 5.93536 5.96029 6.00017 6.09128 6.30940 6.37931 6.69003 6.87810 6.91151 7.45668 8.95246 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.002611 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.105467 B =10720.891302 C =11053.390948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.090 4.090 4 C -0.119 4.119 5 C 0.113 3.887 6 N -0.684 5.684 7 C 0.515 3.485 8 O -0.522 6.522 9 C 0.497 3.503 10 O -0.554 6.554 11 N -0.570 5.570 12 C 0.115 3.885 13 C -0.111 4.111 14 C 0.042 3.958 15 C -0.534 4.534 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 0.952 3.048 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.109 4.109 24 C 0.057 3.943 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.420 0.580 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 -16.230 -12.958 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.178 4.178 3 C -0.128 4.128 4 C -0.156 4.156 5 C -0.009 4.009 6 N -0.337 5.337 7 C 0.296 3.704 8 O -0.401 6.401 9 C 0.280 3.720 10 O -0.434 6.434 11 N -0.301 5.301 12 C -0.006 4.006 13 C -0.150 4.150 14 C 0.024 3.976 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.778 3.222 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.148 4.148 24 C -0.063 4.063 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.257 0.743 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.748 -16.037 -12.935 24.769 hybrid contribution 0.334 0.832 1.138 1.449 sum -13.414 -15.205 -11.797 23.458 Atomic orbital electron populations 1.24031 0.96229 1.02388 1.01154 1.23039 0.96158 0.98734 0.99885 1.20658 0.97961 0.95803 0.98376 1.21692 0.98337 0.95673 0.99939 1.21717 0.91391 0.99688 0.88094 1.45814 1.38513 1.18365 1.30986 1.19963 0.82008 0.83675 0.84763 1.90331 1.67466 1.34866 1.47421 1.20318 0.82143 0.82546 0.86994 1.90690 1.71080 1.36974 1.44664 1.48215 1.36530 1.25266 1.20082 1.21794 0.94028 0.98658 0.86163 1.21792 0.99546 0.92496 1.01162 1.18664 0.93631 0.93452 0.91861 1.21536 1.20323 0.99578 1.15792 0.93139 1.25717 0.94927 1.00721 0.97182 1.69957 1.23525 1.36445 1.25448 0.85700 0.77816 0.80680 0.77972 1.20020 1.20919 1.19674 1.21782 0.99047 0.95603 0.98330 1.23295 1.05389 0.86941 0.90723 0.88437 0.87900 0.86660 0.91065 0.89887 0.89861 0.90729 0.91062 0.90304 0.74254 0.90093 0.91206 0.95728 0.90195 0.97873 0.92945 0.91463 0.94012 0.91574 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 14.32 67.78 0.97 -1.03 16 2 C -0.16 -1.56 9.52 25.65 0.24 -1.31 16 3 C -0.09 -0.82 5.66 29.85 0.17 -0.66 16 4 C -0.12 -1.16 5.31 30.60 0.16 -1.00 16 5 C 0.11 1.67 5.67 86.38 0.49 2.16 16 6 N -0.68 -13.75 5.55 -464.40 -2.58 -16.33 16 7 C 0.51 14.58 7.78 87.27 0.68 15.26 16 8 O -0.52 -16.36 13.10 -3.27 -0.04 -16.41 16 9 C 0.50 16.98 7.74 87.27 0.68 17.65 16 10 O -0.55 -20.23 15.94 -3.23 -0.05 -20.28 16 11 N -0.57 -21.23 2.97 -820.48 -2.44 -23.67 16 12 C 0.12 4.67 6.41 86.36 0.55 5.22 16 13 C -0.11 -5.35 5.16 30.68 0.16 -5.19 16 14 C 0.04 2.13 2.06 -11.50 -0.02 2.10 16 15 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 16 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 17 C 0.01 0.73 5.30 84.66 0.45 1.18 16 18 N -0.91 -52.23 11.30 21.45 0.24 -51.98 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.11 -4.61 5.30 30.67 0.16 -4.45 16 24 C 0.06 2.05 6.27 86.37 0.54 2.59 16 25 H 0.10 0.92 7.84 -2.91 -0.02 0.90 16 26 H 0.10 0.86 8.06 -2.91 -0.02 0.83 16 27 H 0.12 0.95 8.06 -2.90 -0.02 0.92 16 28 H 0.07 0.67 7.79 -2.38 -0.02 0.65 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.42 7.38 7.96 -92.71 -0.74 6.64 16 35 H 0.08 3.20 7.05 -2.39 -0.02 3.18 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 4.27 6.03 -2.38 -0.01 4.26 16 39 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 40 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.16 5.29 3.78 -78.70 -0.30 4.99 16 Total: -1.00 -63.74 356.98 2.57 -61.18 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.04 Total: 18.50 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 5.45 Total: 3.18 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -4.77 Total: -91.98 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.09 Total: -36.69 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -63.74 2.57 -61.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117543461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.349 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds