Wall clock time and date at job start Tue Mar 31 2020 07:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47075 * 2 1 4 4 C 1.50704 * 109.46957 * 120.00342 * 2 1 3 5 5 H 1.08000 * 119.99431 * 117.90620 * 4 2 1 6 6 C 1.37869 * 119.99670 * 297.90288 * 4 2 1 7 7 N 1.31515 * 120.00408 * 7.60513 * 6 4 2 8 8 Si 1.86807 * 119.99964 * 187.60399 * 6 4 2 9 9 H 1.48500 * 109.46722 * 265.12340 * 8 6 4 10 10 H 1.48499 * 109.47095 * 145.12403 * 8 6 4 11 11 H 1.48502 * 109.46914 * 25.12223 * 8 6 4 12 12 C 1.52999 * 109.46626 * 240.00061 * 2 1 3 13 13 N 1.46502 * 109.47601 * 60.00351 * 12 2 1 14 14 C 1.34776 * 120.00301 * 179.97438 * 13 12 2 15 15 O 1.21348 * 120.00046 * 0.02562 * 14 13 12 16 16 C 1.49450 * 119.99999 * 179.97438 * 14 13 12 17 17 O 1.21348 * 119.99955 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99999 * 179.97438 * 16 14 13 19 19 C 1.46498 * 119.99943 * 180.02562 * 18 16 14 20 20 H 1.09002 * 109.35935 * 34.99697 * 19 18 16 21 21 C 1.50071 * 109.35893 * 275.27803 * 19 18 16 22 22 C 1.29435 * 124.07830 * 222.64148 * 21 19 18 23 23 C 1.50074 * 124.07364 * 0.49049 * 22 21 19 24 24 C 1.53018 * 110.14849 * 342.86623 * 23 22 21 25 25 C 1.53018 * 109.36007 * 154.72648 * 19 18 16 26 26 H 1.09000 * 109.46810 * 305.79062 * 1 2 3 27 27 H 1.08999 * 109.47030 * 65.79209 * 1 2 3 28 28 H 1.08998 * 109.47195 * 185.79346 * 1 2 3 29 29 H 1.09001 * 109.46821 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47123 * 300.00323 * 3 2 1 31 31 H 1.08997 * 109.47247 * 60.00348 * 3 2 1 32 32 H 0.96999 * 120.00331 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46790 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.47771 * 299.99440 * 12 2 1 35 35 H 0.97001 * 119.99206 * 359.97438 * 13 12 2 36 36 H 0.97002 * 119.99689 * 0.02562 * 18 16 14 37 37 H 1.08008 * 117.95901 * 42.65967 * 21 19 18 38 38 H 1.08002 * 117.96770 * 180.51046 * 22 21 19 39 39 H 1.08998 * 109.35787 * 103.07704 * 23 22 21 40 40 H 1.09006 * 109.35328 * 222.79688 * 23 22 21 41 41 H 1.08992 * 109.64413 * 169.12344 * 24 23 22 42 42 H 1.09001 * 109.64209 * 289.54535 * 24 23 22 43 43 H 1.09001 * 109.64196 * 289.32716 * 25 19 18 44 44 H 1.09006 * 109.64437 * 49.95302 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6250 -1.6079 1.1316 6 6 1.7353 -0.2148 2.4822 7 7 0.8931 0.7872 2.6098 8 14 2.5290 -0.9665 3.9970 9 1 1.6223 -1.9914 4.5738 10 1 2.7790 0.0962 5.0037 11 1 3.8165 -1.6017 3.6175 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8776 -0.4908 -3.6696 15 8 2.5751 -1.4775 -3.7810 16 6 1.3790 0.2134 -4.8898 17 8 0.6810 1.1998 -4.7785 18 7 1.7054 -0.2465 -6.1140 19 6 1.2171 0.4442 -7.3101 20 1 1.1803 1.5166 -7.1184 21 6 -0.1609 -0.0492 -7.6417 22 6 -0.5641 -0.3229 -8.8408 23 6 0.2932 -0.1950 -10.0659 24 6 1.5126 0.6797 -9.7670 25 6 2.1672 0.1698 -8.4777 26 1 -0.3633 0.6010 0.8336 27 1 -0.3633 0.4214 -0.9373 28 1 -0.3633 -1.0224 0.1037 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.6838 1.1357 3.4905 33 1 3.1299 -0.7217 -1.2491 34 1 1.6767 -1.7490 -1.2493 35 1 0.9937 0.7579 -2.3564 36 1 2.2636 -1.0348 -6.2029 37 1 -0.8596 -0.1841 -6.8293 38 1 -1.5809 -0.6642 -8.9677 39 1 0.6263 -1.1846 -10.3787 40 1 -0.2881 0.2607 -10.8677 41 1 2.2229 0.6120 -10.5908 42 1 1.1979 1.7154 -9.6387 43 1 3.1086 0.6947 -8.3151 44 1 2.3507 -0.9018 -8.5568 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118012992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:00 Heat of formation + Delta-G solvation = -70.934689 kcal Electronic energy + Delta-G solvation = -23632.582558 eV Core-core repulsion = 20163.613249 eV Total energy + Delta-G solvation = -3468.969309 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57629 -39.07127 -37.87326 -36.47465 -34.51027 -33.23758 -31.39820 -30.89458 -29.75817 -26.34479 -25.72941 -25.29865 -24.07678 -22.74137 -22.30678 -20.12071 -19.04581 -18.57151 -17.95685 -16.86560 -16.47335 -15.86538 -15.61797 -15.33260 -14.87529 -14.60461 -14.26637 -14.06397 -13.50964 -13.41417 -13.15135 -12.95965 -12.92758 -12.70994 -12.58983 -12.22036 -11.65109 -11.44993 -11.34977 -11.16941 -11.03590 -10.88341 -10.74854 -10.69345 -10.40307 -10.20641 -9.64828 -9.56572 -9.41274 -9.29849 -9.18982 -8.82299 -8.59500 -8.35256 -6.03639 -4.12650 1.65700 1.90897 2.69235 3.27558 3.35390 3.39575 3.47886 3.93766 4.32401 4.38490 4.39973 4.60269 4.79661 4.80509 5.00302 5.14211 5.18347 5.23349 5.26607 5.48412 5.51216 5.62786 5.86290 5.89925 6.11288 6.13956 6.23443 6.36001 6.46776 6.62628 6.63523 6.82040 6.84918 6.93736 6.99540 7.12304 7.33464 7.54814 7.67513 7.72946 7.97373 7.98352 8.12452 8.32129 8.41372 8.87093 9.52679 10.98403 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044040 B = 0.002704 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.640099 B =10352.147409 C =10539.825321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.508 3.492 17 O -0.520 6.520 18 N -0.700 5.700 19 C 0.174 3.826 20 H 0.100 0.900 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.094 4.094 24 C -0.117 4.117 25 C -0.127 4.127 26 H 0.087 0.913 27 H 0.006 0.994 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.010 0.990 31 H 0.082 0.918 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.413 0.587 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 0.015 -22.552 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.414 6.414 16 C 0.290 3.710 17 O -0.395 6.395 18 N -0.353 5.353 19 C 0.070 3.930 20 H 0.118 0.882 21 C -0.181 4.181 22 C -0.166 4.166 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.165 4.165 26 H 0.106 0.894 27 H 0.025 0.975 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.249 0.751 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.328 0.155 -22.345 22.348 hybrid contribution 0.226 -0.439 0.947 1.068 sum -0.102 -0.284 -21.398 21.400 Atomic orbital electron populations 1.21892 0.97481 1.00304 0.99301 1.18382 0.93049 0.92738 0.90314 1.21826 0.98674 0.98295 1.00250 1.20936 1.33297 1.10759 0.89778 0.92328 1.24877 0.94626 0.95062 0.98821 1.69848 1.32989 1.25990 1.23269 0.86573 0.79896 0.78813 0.82685 1.20814 1.21178 1.19828 1.21930 0.98553 0.96049 0.82854 1.46233 1.50394 1.31402 1.05166 1.19973 0.82396 0.85240 0.84932 1.90722 1.37940 1.25954 1.86776 1.20521 0.80875 0.84600 0.85051 1.90754 1.36459 1.25423 1.86816 1.45831 1.52756 1.32301 1.04428 1.19843 0.91253 0.98016 0.83855 0.88222 1.22420 0.97378 1.00659 0.97625 1.22070 0.99931 1.00420 0.94152 1.20513 0.95867 1.00414 0.96312 1.21567 0.97125 0.99903 0.96872 1.21869 0.98360 1.02455 0.93828 0.89448 0.97500 0.95149 0.95234 0.97082 0.89909 0.92968 0.91972 0.92008 0.75181 0.75105 0.87482 0.87647 0.90662 0.90889 0.90987 0.91241 0.90642 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.03 8.06 37.15 0.30 -2.73 16 4 C -0.51 -13.25 8.00 -34.44 -0.28 -13.52 16 5 H 0.06 1.53 7.76 -52.49 -0.41 1.12 16 6 C 0.07 1.78 5.11 -17.82 -0.09 1.69 16 7 N -0.88 -23.64 9.48 55.43 0.53 -23.11 16 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.68 -12.72 4.90 -60.73 -0.30 -13.02 16 14 C 0.50 8.75 7.89 -11.59 -0.09 8.65 16 15 O -0.54 -10.30 16.48 5.50 0.09 -10.20 16 16 C 0.51 7.84 7.84 -11.59 -0.09 7.75 16 17 O -0.52 -9.00 16.14 5.50 0.09 -8.92 16 18 N -0.70 -8.38 5.04 -55.65 -0.28 -8.66 16 19 C 0.17 1.77 2.71 -69.38 -0.19 1.58 16 20 H 0.10 1.13 7.57 -51.93 -0.39 0.74 16 21 C -0.16 -1.65 9.32 -35.90 -0.33 -1.99 16 22 C -0.15 -1.21 9.80 -35.89 -0.35 -1.56 16 23 C -0.09 -0.59 6.11 -28.18 -0.17 -0.76 16 24 C -0.12 -0.71 6.01 -26.55 -0.16 -0.87 16 25 C -0.13 -0.93 5.46 -26.55 -0.15 -1.07 16 26 H 0.09 2.21 6.16 -51.93 -0.32 1.89 16 27 H 0.01 0.13 6.72 -51.93 -0.35 -0.22 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.01 0.21 6.86 -51.93 -0.36 -0.14 16 31 H 0.08 2.08 6.21 -51.93 -0.32 1.75 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.41 7.57 5.63 -40.82 -0.23 7.34 16 36 H 0.41 4.47 8.06 -40.82 -0.33 4.14 16 37 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -28.40 353.07 -7.88 -36.29 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.91 Total: 8.40 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.40 Total: -1.68 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.05 Total: -44.80 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.18 Total: -19.12 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.40 -7.88 -36.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118012992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.649 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds