Wall clock time and date at job start Tue Mar 31 2020 07:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47075 * 2 1 4 4 C 1.50704 * 109.46957 * 120.00342 * 2 1 3 5 5 H 1.08000 * 119.99431 * 117.90620 * 4 2 1 6 6 C 1.37869 * 119.99670 * 297.90288 * 4 2 1 7 7 N 1.31515 * 120.00408 * 7.60513 * 6 4 2 8 8 Si 1.86807 * 119.99964 * 187.60399 * 6 4 2 9 9 H 1.48500 * 109.46722 * 265.12340 * 8 6 4 10 10 H 1.48499 * 109.47095 * 145.12403 * 8 6 4 11 11 H 1.48502 * 109.46914 * 25.12223 * 8 6 4 12 12 C 1.52999 * 109.46626 * 240.00061 * 2 1 3 13 13 N 1.46502 * 109.47601 * 60.00351 * 12 2 1 14 14 C 1.34776 * 120.00301 * 179.97438 * 13 12 2 15 15 O 1.21348 * 120.00046 * 0.02562 * 14 13 12 16 16 C 1.49450 * 119.99999 * 179.97438 * 14 13 12 17 17 O 1.21348 * 119.99955 * 0.02562 * 16 14 13 18 18 N 1.34776 * 119.99999 * 179.97438 * 16 14 13 19 19 C 1.46498 * 119.99943 * 180.02562 * 18 16 14 20 20 H 1.09002 * 109.35935 * 34.99697 * 19 18 16 21 21 C 1.50071 * 109.35893 * 275.27803 * 19 18 16 22 22 C 1.29435 * 124.07830 * 222.64148 * 21 19 18 23 23 C 1.50074 * 124.07364 * 0.49049 * 22 21 19 24 24 C 1.53018 * 110.14849 * 342.86623 * 23 22 21 25 25 C 1.53018 * 109.36007 * 154.72648 * 19 18 16 26 26 H 1.09000 * 109.46810 * 305.79062 * 1 2 3 27 27 H 1.08999 * 109.47030 * 65.79209 * 1 2 3 28 28 H 1.08998 * 109.47195 * 185.79346 * 1 2 3 29 29 H 1.09001 * 109.46821 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47123 * 300.00323 * 3 2 1 31 31 H 1.08997 * 109.47247 * 60.00348 * 3 2 1 32 32 H 0.96999 * 120.00331 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46790 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.47771 * 299.99440 * 12 2 1 35 35 H 0.97001 * 119.99206 * 359.97438 * 13 12 2 36 36 H 0.97002 * 119.99689 * 0.02562 * 18 16 14 37 37 H 1.08008 * 117.95901 * 42.65967 * 21 19 18 38 38 H 1.08002 * 117.96770 * 180.51046 * 22 21 19 39 39 H 1.08998 * 109.35787 * 103.07704 * 23 22 21 40 40 H 1.09006 * 109.35328 * 222.79688 * 23 22 21 41 41 H 1.08992 * 109.64413 * 169.12344 * 24 23 22 42 42 H 1.09001 * 109.64209 * 289.54535 * 24 23 22 43 43 H 1.09001 * 109.64196 * 289.32716 * 25 19 18 44 44 H 1.09006 * 109.64437 * 49.95302 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6250 -1.6079 1.1316 6 6 1.7353 -0.2148 2.4822 7 7 0.8931 0.7872 2.6098 8 14 2.5290 -0.9665 3.9970 9 1 1.6223 -1.9914 4.5738 10 1 2.7790 0.0962 5.0037 11 1 3.8165 -1.6017 3.6175 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8776 -0.4908 -3.6696 15 8 2.5751 -1.4775 -3.7810 16 6 1.3790 0.2134 -4.8898 17 8 0.6810 1.1998 -4.7785 18 7 1.7054 -0.2465 -6.1140 19 6 1.2171 0.4442 -7.3101 20 1 1.1803 1.5166 -7.1184 21 6 -0.1609 -0.0492 -7.6417 22 6 -0.5641 -0.3229 -8.8408 23 6 0.2932 -0.1950 -10.0659 24 6 1.5126 0.6797 -9.7670 25 6 2.1672 0.1698 -8.4777 26 1 -0.3633 0.6010 0.8336 27 1 -0.3633 0.4214 -0.9373 28 1 -0.3633 -1.0224 0.1037 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.6838 1.1357 3.4905 33 1 3.1299 -0.7217 -1.2491 34 1 1.6767 -1.7490 -1.2493 35 1 0.9937 0.7579 -2.3564 36 1 2.2636 -1.0348 -6.2029 37 1 -0.8596 -0.1841 -6.8293 38 1 -1.5809 -0.6642 -8.9677 39 1 0.6263 -1.1846 -10.3787 40 1 -0.2881 0.2607 -10.8677 41 1 2.2229 0.6120 -10.5908 42 1 1.1979 1.7154 -9.6387 43 1 3.1086 0.6947 -8.3151 44 1 2.3507 -0.9018 -8.5568 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118012992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:59 Heat of formation + Delta-G solvation = -88.395828 kcal Electronic energy + Delta-G solvation = -23633.339730 eV Core-core repulsion = 20163.613249 eV Total energy + Delta-G solvation = -3469.726481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82610 -40.19727 -38.94578 -38.20610 -35.63614 -34.83394 -32.76309 -32.01687 -30.56515 -27.91200 -27.60810 -27.21256 -25.29496 -23.39219 -23.30393 -21.41225 -20.72312 -19.87582 -18.79782 -18.07104 -17.80813 -17.32580 -16.96912 -16.63503 -16.48547 -15.95725 -15.52493 -15.12177 -14.78776 -14.57906 -14.55631 -14.09235 -14.06339 -13.77412 -13.54800 -13.29764 -13.28595 -13.11253 -12.82654 -12.71657 -12.58682 -12.28761 -12.13710 -12.06398 -11.59506 -11.51834 -11.41036 -11.31201 -10.79521 -10.65884 -10.40164 -10.31805 -10.13385 -10.04228 -8.03255 -6.18018 0.32752 1.08109 1.43358 1.46646 1.53675 1.57246 2.12992 2.45298 2.73207 3.21029 3.43433 3.68861 3.76865 4.03195 4.19584 4.33152 4.37503 4.45174 4.45880 4.59826 4.66526 4.71433 4.87280 4.91421 5.01633 5.02043 5.04034 5.11425 5.14964 5.18942 5.20098 5.29061 5.41303 5.46786 5.62805 5.64680 5.67706 5.92582 5.94033 6.08092 6.17234 6.37941 6.40242 6.73389 6.85951 6.95122 7.49446 8.96848 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044040 B = 0.002704 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.640099 B =10352.147409 C =10539.825321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.947 3.053 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.514 3.486 17 O -0.542 6.542 18 N -0.682 5.682 19 C 0.173 3.827 20 H 0.085 0.915 21 C -0.191 4.191 22 C -0.126 4.126 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.122 4.122 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.413 0.587 36 H 0.419 0.581 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -0.340 -24.813 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.774 3.226 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.278 3.722 15 O -0.429 6.429 16 C 0.294 3.706 17 O -0.419 6.419 18 N -0.334 5.334 19 C 0.070 3.930 20 H 0.103 0.897 21 C -0.211 4.211 22 C -0.145 4.145 23 C -0.132 4.132 24 C -0.153 4.153 25 C -0.160 4.160 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.251 0.749 36 H 0.257 0.743 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.172 -0.213 -24.648 24.650 hybrid contribution 0.038 -0.360 1.542 1.584 sum 0.210 -0.573 -23.106 23.114 Atomic orbital electron populations 1.21739 0.97381 0.99431 0.99443 1.18379 0.93106 0.92976 0.90551 1.21682 0.98409 0.97954 1.00072 1.21229 1.33395 1.10869 0.91147 0.92997 1.25498 0.95070 0.95582 1.01108 1.69962 1.33574 1.26720 1.23648 0.85714 0.79042 0.78054 0.79805 1.20653 1.20977 1.19659 1.21546 0.98007 0.95466 0.82968 1.46086 1.50744 1.31468 1.05045 1.20344 0.81683 0.84902 0.85268 1.90709 1.38511 1.26634 1.87086 1.20061 0.80965 0.84312 0.85257 1.90750 1.37742 1.26397 1.87020 1.45856 1.51556 1.32035 1.03960 1.20014 0.92216 0.96927 0.83806 0.89694 1.22259 0.97179 1.03758 0.97860 1.22355 1.00487 0.97449 0.94234 1.20614 0.95762 1.01387 0.95467 1.21594 0.97437 0.99554 0.96683 1.21889 0.97880 1.03217 0.93042 0.91686 0.95372 0.95944 0.95450 0.95008 0.92228 0.93046 0.92557 0.92790 0.74926 0.74281 0.89904 0.86911 0.89270 0.89287 0.88894 0.91618 0.89982 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.63 8.06 71.98 0.58 -5.05 16 4 C -0.53 -27.64 8.00 25.60 0.20 -27.44 16 5 H 0.05 2.72 7.76 -2.91 -0.02 2.70 16 6 C 0.03 1.44 5.11 84.65 0.43 1.87 16 7 N -0.90 -48.65 9.48 21.44 0.20 -48.45 16 8 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.14 6.00 4.50 86.38 0.39 6.39 16 13 N -0.68 -25.23 4.90 -464.41 -2.28 -27.51 16 14 C 0.50 17.34 7.89 87.27 0.69 18.02 16 15 O -0.55 -20.81 16.48 -3.24 -0.05 -20.86 16 16 C 0.51 15.64 7.84 87.27 0.68 16.32 16 17 O -0.54 -18.73 16.14 -3.24 -0.05 -18.78 16 18 N -0.68 -15.74 5.04 -448.35 -2.26 -18.00 16 19 C 0.17 3.34 2.71 44.05 0.12 3.46 16 20 H 0.09 1.90 7.57 -2.39 -0.02 1.88 16 21 C -0.19 -3.77 9.32 27.05 0.25 -3.52 16 22 C -0.13 -1.84 9.80 27.05 0.27 -1.58 16 23 C -0.10 -0.88 6.11 29.66 0.18 -0.70 16 24 C -0.11 -1.05 6.01 30.71 0.18 -0.87 16 25 C -0.12 -1.49 5.46 30.71 0.17 -1.33 16 26 H 0.06 3.32 6.16 -2.39 -0.01 3.30 16 27 H 0.03 1.14 6.72 -2.39 -0.02 1.12 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 31 H 0.06 3.01 6.21 -2.39 -0.01 2.99 16 32 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 2.33 8.14 -2.39 -0.02 2.32 16 35 H 0.41 14.98 5.63 -92.71 -0.52 14.46 16 36 H 0.42 8.53 8.06 -92.71 -0.75 7.79 16 37 H 0.08 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.89 8.11 -2.38 -0.02 0.87 16 Total: -1.00 -60.46 353.07 2.03 -58.43 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.26 Total: 27.90 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 4.70 Total: 2.85 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.33 Total: -93.95 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.11 Total: -39.65 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -60.46 2.03 -58.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118012992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.965 kcal (2) G-P(sol) polarization free energy of solvation -60.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds