Wall clock time and date at job start Tue Mar 31 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46790 * 2 1 4 4 C 1.50703 * 109.47242 * 240.00425 * 2 1 3 5 5 H 1.08001 * 119.99888 * 237.00410 * 4 2 1 6 6 C 1.37879 * 120.00200 * 57.00169 * 4 2 1 7 7 N 1.31519 * 119.99648 * 5.54566 * 6 4 2 8 8 Si 1.86794 * 120.00039 * 185.54116 * 6 4 2 9 9 H 1.48503 * 109.47136 * 85.00141 * 8 6 4 10 10 H 1.48494 * 109.47237 * 205.00024 * 8 6 4 11 11 H 1.48499 * 109.47085 * 325.00493 * 8 6 4 12 12 C 1.52991 * 109.47283 * 119.99901 * 2 1 3 13 13 N 1.46503 * 109.47448 * 300.00627 * 12 2 1 14 14 C 1.34773 * 120.00404 * 179.72485 * 13 12 2 15 15 O 1.21359 * 119.99722 * 0.27257 * 14 13 12 16 16 C 1.49451 * 120.00240 * 180.27241 * 14 13 12 17 17 O 1.21346 * 119.99788 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99880 * 179.97438 * 16 14 13 19 19 C 1.46503 * 119.99742 * 179.97438 * 18 16 14 20 20 H 1.08998 * 109.35981 * 325.27625 * 19 18 16 21 21 C 1.50064 * 109.35879 * 85.00469 * 19 18 16 22 22 C 1.29439 * 124.07901 * 137.35445 * 21 19 18 23 23 C 1.50064 * 124.07463 * 359.51378 * 22 21 19 24 24 C 1.53027 * 110.14682 * 17.12478 * 23 22 21 25 25 C 1.53024 * 109.35604 * 205.68944 * 19 18 16 26 26 H 1.09000 * 109.47460 * 293.92799 * 1 2 3 27 27 H 1.09005 * 109.47541 * 53.93700 * 1 2 3 28 28 H 1.09006 * 109.46675 * 173.93068 * 1 2 3 29 29 H 1.09001 * 109.46825 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47288 * 300.00489 * 3 2 1 31 31 H 1.09004 * 109.46871 * 60.00126 * 3 2 1 32 32 H 0.96999 * 119.99415 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47580 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47391 * 60.00281 * 12 2 1 35 35 H 0.97001 * 119.99396 * 359.97438 * 13 12 2 36 36 H 0.97005 * 120.00367 * 0.02562 * 18 16 14 37 37 H 1.08007 * 117.95867 * 317.33702 * 21 19 18 38 38 H 1.07999 * 117.96185 * 179.52481 * 22 21 19 39 39 H 1.09003 * 109.35845 * 137.32906 * 23 22 21 40 40 H 1.08995 * 109.35646 * 257.05419 * 23 22 21 41 41 H 1.09009 * 109.63992 * 70.25236 * 24 23 22 42 42 H 1.08999 * 109.63908 * 190.66655 * 24 23 22 43 43 H 1.09000 * 109.64913 * 310.04420 * 25 19 18 44 44 H 1.09003 * 109.64144 * 70.67416 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6926 -1.5594 -1.1322 6 6 1.6491 -0.2764 -2.4819 7 7 0.9350 0.8210 -2.6071 8 14 2.1442 -1.2468 -3.9992 9 1 1.1620 -2.3360 -4.2324 10 1 2.1708 -0.3437 -5.1776 11 1 3.4933 -1.8325 -3.7938 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8726 -0.4943 3.6695 15 8 2.5704 -1.4810 3.7808 16 6 1.3693 0.2065 4.8897 17 8 0.6720 1.1934 4.7784 18 7 1.6900 -0.2575 6.1138 19 6 1.1971 0.4299 7.3100 20 1 1.1575 1.5024 7.1199 21 6 -0.1799 -0.0683 7.6381 22 6 -0.5848 -0.3450 8.8360 23 6 0.2695 -0.2163 10.0630 24 6 1.4869 0.6626 9.7677 25 6 2.1476 0.1594 8.4783 26 1 -0.3634 0.4168 0.9393 27 1 -0.3634 0.6050 -0.8308 28 1 -0.3633 -1.0220 -0.1087 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.6651 1.1260 -3.4874 33 1 3.1300 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9942 0.7581 2.3564 36 1 2.2477 -1.0462 6.2028 37 1 -0.8766 -0.2041 6.8240 38 1 -1.6006 -0.6902 8.9601 39 1 -0.3154 0.2342 10.8649 40 1 0.6070 -1.2051 10.3735 41 1 1.1689 1.6970 9.6367 42 1 2.1941 0.5987 10.5947 43 1 2.3363 -0.9112 8.5569 44 1 3.0865 0.6892 8.3169 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118012993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:03 Heat of formation + Delta-G solvation = -71.065364 kcal Electronic energy + Delta-G solvation = -23632.701393 eV Core-core repulsion = 20163.726418 eV Total energy + Delta-G solvation = -3468.974976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57538 -39.06842 -37.87201 -36.47357 -34.50963 -33.23677 -31.39786 -30.89071 -29.75920 -26.34385 -25.72675 -25.29867 -24.07626 -22.74168 -22.30629 -20.12268 -19.04617 -18.57190 -17.95386 -16.86555 -16.47359 -15.86479 -15.61621 -15.33351 -14.87639 -14.60592 -14.26767 -14.06135 -13.50940 -13.41732 -13.15327 -12.96142 -12.92512 -12.70682 -12.58731 -12.21867 -11.64840 -11.43557 -11.35165 -11.16744 -11.03727 -10.87549 -10.75231 -10.70780 -10.39597 -10.21197 -9.64489 -9.56608 -9.41330 -9.29867 -9.18943 -8.80921 -8.59811 -8.36383 -6.03330 -4.12865 1.65682 1.90731 2.69219 3.28626 3.35309 3.38307 3.47869 3.93749 4.32467 4.38554 4.39968 4.59858 4.79527 4.80469 5.00520 5.14142 5.18386 5.23728 5.26749 5.48495 5.51272 5.62619 5.86193 5.89913 6.11363 6.13914 6.23546 6.35900 6.46826 6.62503 6.63594 6.82682 6.84668 6.93687 6.99858 7.12290 7.33268 7.55276 7.67592 7.72969 7.97629 7.98567 8.12330 8.32212 8.41396 8.87055 9.52651 10.98769 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043447 B = 0.002703 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.312311 B =10355.838420 C =10512.640420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.700 5.700 19 C 0.174 3.826 20 H 0.100 0.900 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.094 4.094 24 C -0.117 4.117 25 C -0.127 4.127 26 H 0.009 0.991 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.413 0.587 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -0.173 22.535 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.006 3.994 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.414 6.414 16 C 0.290 3.710 17 O -0.395 6.395 18 N -0.353 5.353 19 C 0.070 3.930 20 H 0.118 0.882 21 C -0.181 4.181 22 C -0.166 4.166 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.165 4.165 26 H 0.027 0.973 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.249 0.751 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.576 -0.031 22.326 22.333 hybrid contribution 0.065 -0.567 -0.941 1.101 sum -0.511 -0.598 21.384 21.399 Atomic orbital electron populations 1.21837 0.97580 1.00260 0.99286 1.18378 0.92932 0.92859 0.90297 1.21881 0.98643 0.98243 1.00343 1.20933 1.29558 1.14437 0.89827 0.92346 1.24883 0.94953 0.94760 0.98835 1.69834 1.37648 1.21327 1.23371 0.86577 0.79008 0.79885 0.82331 1.20617 1.21323 1.19965 1.21933 0.98540 0.96055 0.82860 1.46234 1.50506 1.31284 1.05168 1.19976 0.82417 0.85221 0.84934 1.90725 1.37933 1.25960 1.86782 1.20519 0.80888 0.84583 0.85053 1.90753 1.36501 1.25388 1.86809 1.45831 1.52784 1.32271 1.04431 1.19840 0.91217 0.98062 0.83861 0.88225 1.22415 0.97362 1.00651 0.97641 1.22069 0.99938 1.00409 0.94154 1.20509 0.95880 1.00405 0.96300 1.21576 0.97124 0.99907 0.96867 1.21878 0.98338 1.02486 0.93812 0.97253 0.89838 0.95077 0.95343 0.89418 0.97330 0.92935 0.91998 0.91984 0.75181 0.75103 0.87480 0.87647 0.90864 0.90674 0.91284 0.90967 0.90791 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.03 37.16 0.30 -2.73 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 4 C -0.51 -13.24 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.88 -23.66 9.45 55.43 0.52 -23.14 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.68 -12.73 4.90 -60.73 -0.30 -13.03 16 14 C 0.50 8.75 7.89 -11.59 -0.09 8.66 16 15 O -0.54 -10.30 16.48 5.49 0.09 -10.21 16 16 C 0.51 7.85 7.84 -11.59 -0.09 7.76 16 17 O -0.52 -9.01 16.13 5.50 0.09 -8.92 16 18 N -0.70 -8.38 5.04 -55.65 -0.28 -8.66 16 19 C 0.17 1.76 2.70 -69.38 -0.19 1.58 16 20 H 0.10 1.13 7.56 -51.93 -0.39 0.74 16 21 C -0.16 -1.65 9.33 -35.90 -0.33 -1.98 16 22 C -0.15 -1.21 9.80 -35.90 -0.35 -1.56 16 23 C -0.09 -0.59 6.12 -28.18 -0.17 -0.76 16 24 C -0.12 -0.71 6.01 -26.52 -0.16 -0.87 16 25 C -0.13 -0.93 5.48 -26.53 -0.15 -1.07 16 26 H 0.01 0.18 6.71 -51.93 -0.35 -0.17 16 27 H 0.08 2.09 6.25 -51.93 -0.32 1.77 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.22 6.10 -51.93 -0.32 1.90 16 31 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 32 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.41 7.57 5.63 -40.82 -0.23 7.34 16 36 H 0.41 4.47 8.06 -40.82 -0.33 4.14 16 37 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.11 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.12 -51.92 -0.42 0.02 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -28.38 353.04 -7.88 -36.26 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.91 Total: 8.44 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.40 Total: -1.70 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.05 Total: -44.83 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.18 Total: -19.13 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.38 -7.88 -36.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118012993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.801 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds