Wall clock time and date at job start Tue Mar 31 2020 07:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46790 * 2 1 4 4 C 1.50703 * 109.47242 * 240.00425 * 2 1 3 5 5 H 1.08001 * 119.99888 * 237.00410 * 4 2 1 6 6 C 1.37879 * 120.00200 * 57.00169 * 4 2 1 7 7 N 1.31519 * 119.99648 * 5.54566 * 6 4 2 8 8 Si 1.86794 * 120.00039 * 185.54116 * 6 4 2 9 9 H 1.48503 * 109.47136 * 85.00141 * 8 6 4 10 10 H 1.48494 * 109.47237 * 205.00024 * 8 6 4 11 11 H 1.48499 * 109.47085 * 325.00493 * 8 6 4 12 12 C 1.52991 * 109.47283 * 119.99901 * 2 1 3 13 13 N 1.46503 * 109.47448 * 300.00627 * 12 2 1 14 14 C 1.34773 * 120.00404 * 179.72485 * 13 12 2 15 15 O 1.21359 * 119.99722 * 0.27257 * 14 13 12 16 16 C 1.49451 * 120.00240 * 180.27241 * 14 13 12 17 17 O 1.21346 * 119.99788 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99880 * 179.97438 * 16 14 13 19 19 C 1.46503 * 119.99742 * 179.97438 * 18 16 14 20 20 H 1.08998 * 109.35981 * 325.27625 * 19 18 16 21 21 C 1.50064 * 109.35879 * 85.00469 * 19 18 16 22 22 C 1.29439 * 124.07901 * 137.35445 * 21 19 18 23 23 C 1.50064 * 124.07463 * 359.51378 * 22 21 19 24 24 C 1.53027 * 110.14682 * 17.12478 * 23 22 21 25 25 C 1.53024 * 109.35604 * 205.68944 * 19 18 16 26 26 H 1.09000 * 109.47460 * 293.92799 * 1 2 3 27 27 H 1.09005 * 109.47541 * 53.93700 * 1 2 3 28 28 H 1.09006 * 109.46675 * 173.93068 * 1 2 3 29 29 H 1.09001 * 109.46825 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47288 * 300.00489 * 3 2 1 31 31 H 1.09004 * 109.46871 * 60.00126 * 3 2 1 32 32 H 0.96999 * 119.99415 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47580 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47391 * 60.00281 * 12 2 1 35 35 H 0.97001 * 119.99396 * 359.97438 * 13 12 2 36 36 H 0.97005 * 120.00367 * 0.02562 * 18 16 14 37 37 H 1.08007 * 117.95867 * 317.33702 * 21 19 18 38 38 H 1.07999 * 117.96185 * 179.52481 * 22 21 19 39 39 H 1.09003 * 109.35845 * 137.32906 * 23 22 21 40 40 H 1.08995 * 109.35646 * 257.05419 * 23 22 21 41 41 H 1.09009 * 109.63992 * 70.25236 * 24 23 22 42 42 H 1.08999 * 109.63908 * 190.66655 * 24 23 22 43 43 H 1.09000 * 109.64913 * 310.04420 * 25 19 18 44 44 H 1.09003 * 109.64144 * 70.67416 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6926 -1.5594 -1.1322 6 6 1.6491 -0.2764 -2.4819 7 7 0.9350 0.8210 -2.6071 8 14 2.1442 -1.2468 -3.9992 9 1 1.1620 -2.3360 -4.2324 10 1 2.1708 -0.3437 -5.1776 11 1 3.4933 -1.8325 -3.7938 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8726 -0.4943 3.6695 15 8 2.5704 -1.4810 3.7808 16 6 1.3693 0.2065 4.8897 17 8 0.6720 1.1934 4.7784 18 7 1.6900 -0.2575 6.1138 19 6 1.1971 0.4299 7.3100 20 1 1.1575 1.5024 7.1199 21 6 -0.1799 -0.0683 7.6381 22 6 -0.5848 -0.3450 8.8360 23 6 0.2695 -0.2163 10.0630 24 6 1.4869 0.6626 9.7677 25 6 2.1476 0.1594 8.4783 26 1 -0.3634 0.4168 0.9393 27 1 -0.3634 0.6050 -0.8308 28 1 -0.3633 -1.0220 -0.1087 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.6651 1.1260 -3.4874 33 1 3.1300 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9942 0.7581 2.3564 36 1 2.2477 -1.0462 6.2028 37 1 -0.8766 -0.2041 6.8240 38 1 -1.6006 -0.6902 8.9601 39 1 -0.3154 0.2342 10.8649 40 1 0.6070 -1.2051 10.3735 41 1 1.1689 1.6970 9.6367 42 1 2.1941 0.5987 10.5947 43 1 2.3363 -0.9112 8.5569 44 1 3.0865 0.6892 8.3169 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118012993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:02 Heat of formation + Delta-G solvation = -88.501712 kcal Electronic energy + Delta-G solvation = -23633.457490 eV Core-core repulsion = 20163.726418 eV Total energy + Delta-G solvation = -3469.731072 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82582 -40.19561 -38.94408 -38.20538 -35.63565 -34.83323 -32.75950 -32.01650 -30.56634 -27.91194 -27.60603 -27.21272 -25.29483 -23.39241 -23.30384 -21.41452 -20.72291 -19.87838 -18.79433 -18.07096 -17.80689 -17.32580 -16.96923 -16.63865 -16.48586 -15.95784 -15.52425 -15.12242 -14.78504 -14.57884 -14.55432 -14.09514 -14.06311 -13.77607 -13.54975 -13.29633 -13.26429 -13.11936 -12.82597 -12.70727 -12.60098 -12.28061 -12.14308 -12.06155 -11.59630 -11.51647 -11.41403 -11.31280 -10.78480 -10.65585 -10.41301 -10.32206 -10.13440 -10.04129 -8.02923 -6.18253 0.32691 1.07998 1.44544 1.46664 1.53061 1.56617 2.12933 2.45347 2.73155 3.21417 3.43384 3.68888 3.76795 4.02829 4.19514 4.33212 4.37653 4.44912 4.45928 4.59806 4.66508 4.71739 4.87198 4.91417 5.01625 5.01927 5.04106 5.11378 5.15135 5.18730 5.19991 5.29091 5.41138 5.46671 5.63341 5.64688 5.67445 5.92506 5.93977 6.08319 6.17248 6.37957 6.40280 6.73323 6.85883 6.95067 7.49412 8.97102 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043447 B = 0.002703 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.312311 B =10355.838420 C =10512.640420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.528 4.528 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.514 3.486 17 O -0.542 6.542 18 N -0.682 5.682 19 C 0.173 3.827 20 H 0.085 0.915 21 C -0.191 4.191 22 C -0.126 4.126 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.122 4.122 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.419 0.581 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -0.638 24.797 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.278 3.722 15 O -0.429 6.429 16 C 0.294 3.706 17 O -0.419 6.419 18 N -0.334 5.334 19 C 0.070 3.930 20 H 0.103 0.897 21 C -0.210 4.210 22 C -0.145 4.145 23 C -0.132 4.132 24 C -0.153 4.153 25 C -0.160 4.160 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.257 0.743 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.217 -0.509 24.630 24.637 hybrid contribution -0.069 -0.446 -1.536 1.601 sum -0.285 -0.955 23.094 23.116 Atomic orbital electron populations 1.21690 0.97366 0.99480 0.99453 1.18376 0.93079 0.93003 0.90541 1.21730 0.98273 0.98016 1.00150 1.21229 1.29661 1.14542 0.91190 0.92993 1.25506 0.95144 0.95535 1.01132 1.69951 1.38179 1.22108 1.23719 0.85721 0.78635 0.78671 0.79464 1.20422 1.21138 1.19772 1.21549 0.97960 0.95513 0.82971 1.46088 1.50854 1.31352 1.05049 1.20346 0.81708 0.84880 0.85269 1.90712 1.38505 1.26641 1.87090 1.20059 0.80972 0.84300 0.85257 1.90749 1.37786 1.26365 1.87012 1.45856 1.51587 1.32000 1.03963 1.20011 0.92186 0.96968 0.83812 0.89710 1.22254 0.97168 1.03744 0.97878 1.22355 1.00484 0.97444 0.94237 1.20610 0.95780 1.01371 0.95458 1.21604 0.97433 0.99551 0.96684 1.21897 0.97855 1.03250 0.93031 0.95125 0.92044 0.95731 0.95712 0.91768 0.95258 0.93047 0.92651 0.92685 0.74929 0.74280 0.89882 0.86898 0.89254 0.89281 0.91677 0.88872 0.89899 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.03 71.98 0.58 -5.04 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.70 8.11 71.98 0.58 -5.11 16 4 C -0.53 -27.63 8.01 25.60 0.20 -27.42 16 5 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 6 C 0.03 1.41 5.13 84.65 0.43 1.84 16 7 N -0.90 -48.68 9.45 21.45 0.20 -48.47 16 8 Si 0.95 42.43 29.54 68.60 2.03 44.46 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.14 6.00 4.50 86.38 0.39 6.39 16 13 N -0.68 -25.24 4.90 -464.41 -2.27 -27.51 16 14 C 0.50 17.34 7.89 87.27 0.69 18.03 16 15 O -0.55 -20.82 16.48 -3.27 -0.05 -20.87 16 16 C 0.51 15.65 7.84 87.27 0.68 16.33 16 17 O -0.54 -18.74 16.13 -3.23 -0.05 -18.79 16 18 N -0.68 -15.75 5.04 -448.35 -2.26 -18.01 16 19 C 0.17 3.34 2.70 44.05 0.12 3.46 16 20 H 0.09 1.90 7.56 -2.39 -0.02 1.88 16 21 C -0.19 -3.76 9.33 27.04 0.25 -3.51 16 22 C -0.13 -1.84 9.80 27.04 0.27 -1.57 16 23 C -0.10 -0.88 6.12 29.66 0.18 -0.70 16 24 C -0.11 -1.06 6.01 30.73 0.18 -0.87 16 25 C -0.12 -1.50 5.48 30.73 0.17 -1.33 16 26 H 0.03 1.23 6.71 -2.39 -0.02 1.22 16 27 H 0.06 3.11 6.25 -2.38 -0.01 3.09 16 28 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 3.27 6.10 -2.39 -0.01 3.26 16 31 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 32 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.41 14.99 5.63 -92.71 -0.52 14.47 16 36 H 0.42 8.54 8.06 -92.70 -0.75 7.79 16 37 H 0.08 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.67 8.12 -2.38 -0.02 0.65 16 42 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 0.89 8.11 -2.39 -0.02 0.87 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -60.41 353.04 2.03 -58.38 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.26 Total: 28.00 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 4.71 Total: 2.83 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -4.33 Total: -93.99 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.11 Total: -39.66 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -60.41 2.03 -58.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118012993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.125 kcal (2) G-P(sol) polarization free energy of solvation -60.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds